1QVFV

Structure of a deacylated trna minihelix bound to the e site of the large ribosomal subunit of haloarcula marismortui
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S ribosomal rna
total genus 49
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2003-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1qvfV02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1qvfV01
1KQSV 1VQNW 5GAGa 3PIPW 1JJ2V 1YJNW 4IOCW 1VQMW 3CF5W 1Q86X 1NJIX 1VQ6W 2ZJQW 3CCJW 1Q7YX 1BXYA 5GADa 1YIJW 1VQ5W 3CC7W 1M1KX 3DLLW 1VQLW 1S72W 5HL7W 4WCEW 3CMAW 4WFBW 3CC4W 3PIOW 3CD6W 4IOAW 3CXCV 1VQ8W 3G4SW 3CCMW 5GAHa 3I55W 2ZJPW 1Q82X 4IO9W 3G71W 1VQPW 1VQ7W 4WFNW 4WF9W 1YI2W 2QEXW 2OTJW 3CC2W 1KC8X 1N8RX 4UY8Z 5JVHW 5GAEa 4WFAW 3CCQW 1VQ9W 1YJWW 2ZJRW 1K73X 4U67W 5DM7W 3J7ZZ 3G6EW 3OW2V 1YJ9W 2OTLW 3CCSW 2QA4W 1QVGV 1YHQW 3CCLW 1Q81X 1VQOW 1KD1X 1K8AX 3CCRW 3CMEW 1K9MX 3CPWV 1VQKW 1VQ4W 3CCVW 5DM6W 3CCUW 1M90X 5JVGW 3CCEW 3I56W 1W2BV 1QVFV 1YITW
chains in the Genus database with same CATH superfamily
3O2HA 3W7TA 3ZFZA 1MBXC 1KQSV 5M18A 3D3IA 1VQNW 3O2OA 1MBVB 5GAGa 3PIPW 1JJ2V 1YJNW 4IOCW 1VQMW 3CF5W 1Q86X 1NJIX 4CJNA 5CA3A 1CTFA 1VQ6W 2ZJQW 3CCJW 1MWTA 1Q7YX 1BXYA 3ZG5A 5GADa 3W7WA 1RQVA 5M19A 3O1FA 1YIJW 1VQ5W 3CC7W 1M1KX 1MWSA 3DLLW 3O2BA 3W7SA 1MG9A 1VQLW 3GQ0A 4BL2A 3O1FB 3GQ1A 1S72W 5HL7W 4WCEW 3CMAW 4WFBW 3CC4W 3PIOW 3CD6W 4CPKA 4YJXA 1R6OC 4IOAW 3CXCV 1MBUC 1VQ8W 3G1BA 3G4SW 3CCMW 5GAHa 3I55W 2ZJPW 3DNJA 1Q82X 4IO9W 2W9RA 3W7UA 3G71W 1VQPW 1VQ7W 4WFNW 4WF9W 1YI2W 2QEXW 2OTJW 3CC2W 1KC8X 2WA9A 5GW7A 1N8RX 4UY8Z 5JVHW 4YKAA 5GAEa 3G19A 4WFAW 3CCQW 1VQ9W 1YJWW 2ZJRW 1K73X 1MWRA 4U67W 4YJMA 1RQUA 5DM7W 3J7ZZ 3G6EW 3OW2V 1YJ9W 2OTLW 3CCSW 2WA8A 2QA4W 1QVGV 1YHQW 3CCLW 1Q81X 1VQOW 3W7XA 3G3PA 1DD3A 4BL3A 1KD1X 1VQQA 1K8AX 3CCRW 3CMEW 5M1AA 1K9MX 3CPWV 1VQKW 1VQ4W 1MWUA 3CCVW 5DM6W 3CCUW 1M90X 5JVGW 3GW1A 1DD4A 1R6QC 3CCEW 1RQSA 3I56W 4C1NA 1W2BV 3ZG0A 1QVFV 1YITW 4DKIA 1LZWA
chains in the Genus database with same CATH topology
1KQSV 1VQNW 5GAGa 3PIPW 1JJ2V 1YJNW 4IOCW 1VQMW 3CF5W 1Q86X 1NJIX 1VQ6W 2ZJQW 3CCJW 1Q7YX 1BXYA 5GADa 1YIJW 1VQ5W 3CC7W 1M1KX 3DLLW 1VQLW 1S72W 5HL7W 4WCEW 3CMAW 4WFBW 3CC4W 3PIOW 3CD6W 4IOAW 3CXCV 1VQ8W 3G4SW 3CCMW 5GAHa 3I55W 2ZJPW 1Q82X 4IO9W 3G71W 1VQPW 1VQ7W 4WFNW 4WF9W 1YI2W 2QEXW 2OTJW 3CC2W 1KC8X 1N8RX 4UY8Z 5JVHW 5GAEa 4WFAW 3CCQW 1VQ9W 1YJWW 2ZJRW 1K73X 4U67W 5DM7W 3J7ZZ 3G6EW 3OW2V 1YJ9W 2OTLW 3CCSW 2QA4W 1QVGV 1YHQW 3CCLW 1Q81X 1VQOW 1KD1X 1K8AX 3CCRW 3CMEW 1K9MX 3CPWV 1VQKW 1VQ4W 3CCVW 5DM6W 3CCUW 1M90X 5JVGW 3CCEW 3I56W 4C1NA 1W2BV 1QVFV 1YITW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KQS V;  1VQN W;  5GAG a;  3PIP W;  1JJ2 V;  1YJN W;  4IOC W;  1VQM W;  3CF5 W;  1Q86 X;  1NJI X;  1VQ6 W;  2ZJQ W;  3CCJ W;  1Q7Y X;  1BXY A;  5GAD a;  1YIJ W;  1VQ5 W;  3CC7 W;  1M1K X;  3DLL W;  1VQL W;  1S72 W;  5HL7 W;  4WCE W;  3CMA W;  4WFB W;  3CC4 W;  3PIO W;  3CD6 W;  4IOA W;  3CXC V;  1VQ8 W;  3G4S W;  3CCM W;  5GAH a;  3I55 W;  2ZJP W;  1Q82 X;  4IO9 W;  3G71 W;  1VQP W;  1VQ7 W;  4WFN W;  4WF9 W;  1YI2 W;  2QEX W;  2OTJ W;  3CC2 W;  1KC8 X;  1N8R X;  4UY8 Z;  5JVH W;  5GAE a;  4WFA W;  3CCQ W;  1VQ9 W;  1YJW W;  2ZJR W;  1K73 X;  4U67 W;  5DM7 W;  3J7Z Z;  3G6E W;  3OW2 V;  1YJ9 W;  2OTL W;  3CCS W;  2QA4 W;  1QVG V;  1YHQ W;  3CCL W;  1Q81 X;  1VQO W;  1KD1 X;  1K8A X;  3CCR W;  3CME W;  1K9M X;  3CPW V;  1VQK W;  1VQ4 W;  3CCV W;  5DM6 W;  3CCU W;  1M90 X;  5JVG W;  3CCE W;  3I56 W;  1W2B V;  1QVF V;  1YIT W; 
#chains in the Genus database with same CATH topology
 3O2H A;  3W7T A;  3ZFZ A;  1MBX C;  1KQS V;  5M18 A;  3D3I A;  1VQN W;  3O2O A;  1MBV B;  5GAG a;  3PIP W;  1JJ2 V;  1YJN W;  4IOC W;  1VQM W;  3CF5 W;  1Q86 X;  1NJI X;  4CJN A;  5CA3 A;  1CTF A;  1VQ6 W;  2ZJQ W;  3CCJ W;  1MWT A;  1Q7Y X;  1BXY A;  3ZG5 A;  5GAD a;  3W7W A;  1RQV A;  5M19 A;  3O1F A;  1YIJ W;  1VQ5 W;  3CC7 W;  1M1K X;  1MWS A;  3DLL W;  3O2B A;  3W7S A;  1MG9 A;  1VQL W;  3GQ0 A;  4BL2 A;  3O1F B;  3GQ1 A;  1S72 W;  5HL7 W;  4WCE W;  3CMA W;  4WFB W;  3CC4 W;  3PIO W;  3CD6 W;  4CPK A;  4YJX A;  1R6O C;  4IOA W;  3CXC V;  1MBU C;  1VQ8 W;  3G1B A;  3G4S W;  3CCM W;  5GAH a;  3I55 W;  2ZJP W;  3DNJ A;  1Q82 X;  4IO9 W;  2W9R A;  3W7U A;  3G71 W;  1VQP W;  1VQ7 W;  4WFN W;  4WF9 W;  1YI2 W;  2QEX W;  2OTJ W;  3CC2 W;  1KC8 X;  2WA9 A;  5GW7 A;  1N8R X;  4UY8 Z;  5JVH W;  4YKA A;  5GAE a;  3G19 A;  4WFA W;  3CCQ W;  1VQ9 W;  1YJW W;  2ZJR W;  1K73 X;  1MWR A;  4U67 W;  4YJM A;  1RQU A;  5DM7 W;  3J7Z Z;  3G6E W;  3OW2 V;  1YJ9 W;  2OTL W;  3CCS W;  2WA8 A;  2QA4 W;  1QVG V;  1YHQ W;  3CCL W;  1Q81 X;  1VQO W;  3W7X A;  3G3P A;  1DD3 A;  4BL3 A;  1KD1 X;  1VQQ A;  1K8A X;  3CCR W;  3CME W;  5M1A A;  1K9M X;  3CPW V;  1VQK W;  1VQ4 W;  1MWU A;  3CCV W;  5DM6 W;  3CCU W;  1M90 X;  5JVG W;  3GW1 A;  1DD4 A;  1R6Q C;  3CCE W;  1RQS A;  3I56 W;  4C1N A;  1W2B V;  3ZG0 A;  1QVF V;  1YIT W;  4DKI A;  1LZW A; 
#chains in the Genus database with same CATH homology
 1KQS V;  1VQN W;  5GAG a;  3PIP W;  1JJ2 V;  1YJN W;  4IOC W;  1VQM W;  3CF5 W;  1Q86 X;  1NJI X;  1VQ6 W;  2ZJQ W;  3CCJ W;  1Q7Y X;  1BXY A;  5GAD a;  1YIJ W;  1VQ5 W;  3CC7 W;  1M1K X;  3DLL W;  1VQL W;  1S72 W;  5HL7 W;  4WCE W;  3CMA W;  4WFB W;  3CC4 W;  3PIO W;  3CD6 W;  4IOA W;  3CXC V;  1VQ8 W;  3G4S W;  3CCM W;  5GAH a;  3I55 W;  2ZJP W;  1Q82 X;  4IO9 W;  3G71 W;  1VQP W;  1VQ7 W;  4WFN W;  4WF9 W;  1YI2 W;  2QEX W;  2OTJ W;  3CC2 W;  1KC8 X;  1N8R X;  4UY8 Z;  5JVH W;  5GAE a;  4WFA W;  3CCQ W;  1VQ9 W;  1YJW W;  2ZJR W;  1K73 X;  4U67 W;  5DM7 W;  3J7Z Z;  3G6E W;  3OW2 V;  1YJ9 W;  2OTL W;  3CCS W;  2QA4 W;  1QVG V;  1YHQ W;  3CCL W;  1Q81 X;  1VQO W;  1KD1 X;  1K8A X;  3CCR W;  3CME W;  1K9M X;  3CPW V;  1VQK W;  1VQ4 W;  3CCV W;  5DM6 W;  3CCU W;  1M90 X;  5JVG W;  3CCE W;  3I56 W;  4C1N A;  1W2B V;  1QVF V;  1YIT W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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