1QVGV

Structure of cca oligonucleotide bound to the trna binding sites of the large ribosomal subunit of haloarcula marismortui
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S ribosomal rna
total genus 49
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2003-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1qvgV02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1qvgV01
3CD6W 3CC2W 4IOCW 2ZJPW 1Q82X 1QVGV 1KQSV 1QVFV 4IOAW 2ZJRW 3CXCV 3G71W 1VQ7W 3CCLW 5JVHW 1Q81X 3I56W 3CC4W 3G4SW 1KD1X 4WFNW 1VQKW 1VQPW 1M1KX 3DLLW 2ZJQW 5GAGa 1VQOW 3CMAW 4WFAW 3G6EW 1S72W 1K9MX 3CCJW 5DM7W 3CCQW 2OTJW 1VQ5W 5GADa 1VQ4W 5HL7W 1YITW 1YJ9W 3OW2V 1YI2W 3CC7W 5JVGW 1VQ6W 4IO9W 2QA4W 1M90X 1N8RX 3CCEW 1W2BV 1KC8X 3J7ZZ 1VQ8W 4WF9W 1VQMW 3I55W 3CMEW 3CCSW 1K8AX 1YIJW 3CF5W 1JJ2V 1YHQW 1VQNW 3CCVW 3PIOW 3PIPW 1VQ9W 5GAHa 1YJNW 2QEXW 1NJIX 1Q86X 1BXYA 3CPWV 4WFBW 1Q7YX 4UY8Z 4WCEW 2OTLW 5GAEa 5DM6W 4U67W 1YJWW 3CCRW 3CCUW 3CCMW 1VQLW 1K73X
chains in the Genus database with same CATH superfamily
2WA8A 3CD6W 3CC2W 1MG9A 1RQSA 1RQVA 4IOCW 2ZJPW 1Q82X 4CPKA 1QVGV 1KQSV 1QVFV 3ZG5A 4IOAW 3W7XA 2ZJRW 3W7TA 1MWUA 1MWSA 3CXCV 3G71W 3GQ1A 1VQ7W 3CCLW 5JVHW 1Q81X 3I56W 3CC4W 3G4SW 1MWTA 3O1FA 1KD1X 1VQQA 2WA9A 1R6QC 3GQ0A 1R6OC 1RQUA 5CA3A 4WFNW 1MBVB 3ZG0A 5M18A 1VQKW 1VQPW 4YJMA 1M1KX 3DLLW 2ZJQW 5GAGa 1VQOW 3CMAW 4BL3A 4WFAW 4C1NA 3G1BA 3G6EW 1LZWA 1MBUC 1S72W 1K9MX 3W7WA 3CCJW 5DM7W 3CCQW 2OTJW 4YJXA 1CTFA 3O2BA 3W7SA 1VQ5W 5GADa 1VQ4W 3ZFZA 3W7UA 5HL7W 3G3PA 1YITW 1YJ9W 3OW2V 1YI2W 3CC7W 5JVGW 1VQ6W 4IO9W 2QA4W 3GW1A 1M90X 1N8RX 3CCEW 1W2BV 1KC8X 3J7ZZ 1VQ8W 4YKAA 1DD3A 4WF9W 1VQMW 3D3IA 5M19A 3I55W 3CMEW 3CCSW 1K8AX 1YIJW 1MWRA 3CF5W 1JJ2V 1YHQW 1VQNW 4DKIA 3CCVW 3PIOW 5M1AA 3PIPW 2W9RA 5GW7A 4CJNA 1VQ9W 5GAHa 3O2HA 1YJNW 2QEXW 1NJIX 1Q86X 1BXYA 4BL2A 3CPWV 4WFBW 3O1FB 1MBXC 1Q7YX 4UY8Z 3G19A 2OTLW 4WCEW 1DD4A 5GAEa 5DM6W 4U67W 1YJWW 3CCRW 3CCUW 3CCMW 3O2OA 1VQLW 1K73X 3DNJA
chains in the Genus database with same CATH topology
3CD6W 3CC2W 4IOCW 2ZJPW 1Q82X 1QVGV 1KQSV 1QVFV 4IOAW 2ZJRW 3CXCV 3G71W 1VQ7W 3CCLW 5JVHW 1Q81X 3I56W 3CC4W 3G4SW 1KD1X 4WFNW 1VQKW 1VQPW 1M1KX 3DLLW 2ZJQW 5GAGa 1VQOW 3CMAW 4WFAW 4C1NA 3G6EW 1S72W 1K9MX 3CCJW 5DM7W 3CCQW 2OTJW 1VQ5W 5GADa 1VQ4W 5HL7W 1YITW 1YJ9W 3OW2V 1YI2W 3CC7W 5JVGW 1VQ6W 4IO9W 2QA4W 1M90X 1N8RX 3CCEW 1W2BV 1KC8X 3J7ZZ 1VQ8W 4WF9W 1VQMW 3I55W 3CMEW 3CCSW 1K8AX 1YIJW 3CF5W 1JJ2V 1YHQW 1VQNW 3CCVW 3PIOW 3PIPW 1VQ9W 5GAHa 1YJNW 2QEXW 1NJIX 1Q86X 1BXYA 3CPWV 4WFBW 1Q7YX 4UY8Z 4WCEW 2OTLW 5GAEa 5DM6W 4U67W 1YJWW 3CCRW 3CCUW 3CCMW 1VQLW 1K73X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CD6 W;  3CC2 W;  4IOC W;  2ZJP W;  1Q82 X;  1QVG V;  1KQS V;  1QVF V;  4IOA W;  2ZJR W;  3CXC V;  3G71 W;  1VQ7 W;  3CCL W;  5JVH W;  1Q81 X;  3I56 W;  3CC4 W;  3G4S W;  1KD1 X;  4WFN W;  1VQK W;  1VQP W;  1M1K X;  3DLL W;  2ZJQ W;  5GAG a;  1VQO W;  3CMA W;  4WFA W;  3G6E W;  1S72 W;  1K9M X;  3CCJ W;  5DM7 W;  3CCQ W;  2OTJ W;  1VQ5 W;  5GAD a;  1VQ4 W;  5HL7 W;  1YIT W;  1YJ9 W;  3OW2 V;  1YI2 W;  3CC7 W;  5JVG W;  1VQ6 W;  4IO9 W;  2QA4 W;  1M90 X;  1N8R X;  3CCE W;  1W2B V;  1KC8 X;  3J7Z Z;  1VQ8 W;  4WF9 W;  1VQM W;  3I55 W;  3CME W;  3CCS W;  1K8A X;  1YIJ W;  3CF5 W;  1JJ2 V;  1YHQ W;  1VQN W;  3CCV W;  3PIO W;  3PIP W;  1VQ9 W;  5GAH a;  1YJN W;  2QEX W;  1NJI X;  1Q86 X;  1BXY A;  3CPW V;  4WFB W;  1Q7Y X;  4UY8 Z;  4WCE W;  2OTL W;  5GAE a;  5DM6 W;  4U67 W;  1YJW W;  3CCR W;  3CCU W;  3CCM W;  1VQL W;  1K73 X; 
#chains in the Genus database with same CATH topology
 2WA8 A;  3CD6 W;  3CC2 W;  1MG9 A;  1RQS A;  1RQV A;  4IOC W;  2ZJP W;  1Q82 X;  4CPK A;  1QVG V;  1KQS V;  1QVF V;  3ZG5 A;  4IOA W;  3W7X A;  2ZJR W;  3W7T A;  1MWU A;  1MWS A;  3CXC V;  3G71 W;  3GQ1 A;  1VQ7 W;  3CCL W;  5JVH W;  1Q81 X;  3I56 W;  3CC4 W;  3G4S W;  1MWT A;  3O1F A;  1KD1 X;  1VQQ A;  2WA9 A;  1R6Q C;  3GQ0 A;  1R6O C;  1RQU A;  5CA3 A;  4WFN W;  1MBV B;  3ZG0 A;  5M18 A;  1VQK W;  1VQP W;  4YJM A;  1M1K X;  3DLL W;  2ZJQ W;  5GAG a;  1VQO W;  3CMA W;  4BL3 A;  4WFA W;  4C1N A;  3G1B A;  3G6E W;  1LZW A;  1MBU C;  1S72 W;  1K9M X;  3W7W A;  3CCJ W;  5DM7 W;  3CCQ W;  2OTJ W;  4YJX A;  1CTF A;  3O2B A;  3W7S A;  1VQ5 W;  5GAD a;  1VQ4 W;  3ZFZ A;  3W7U A;  5HL7 W;  3G3P A;  1YIT W;  1YJ9 W;  3OW2 V;  1YI2 W;  3CC7 W;  5JVG W;  1VQ6 W;  4IO9 W;  2QA4 W;  3GW1 A;  1M90 X;  1N8R X;  3CCE W;  1W2B V;  1KC8 X;  3J7Z Z;  1VQ8 W;  4YKA A;  1DD3 A;  4WF9 W;  1VQM W;  3D3I A;  5M19 A;  3I55 W;  3CME W;  3CCS W;  1K8A X;  1YIJ W;  1MWR A;  3CF5 W;  1JJ2 V;  1YHQ W;  1VQN W;  4DKI A;  3CCV W;  3PIO W;  5M1A A;  3PIP W;  2W9R A;  5GW7 A;  4CJN A;  1VQ9 W;  5GAH a;  3O2H A;  1YJN W;  2QEX W;  1NJI X;  1Q86 X;  1BXY A;  4BL2 A;  3CPW V;  4WFB W;  3O1F B;  1MBX C;  1Q7Y X;  4UY8 Z;  3G19 A;  2OTL W;  4WCE W;  1DD4 A;  5GAE a;  5DM6 W;  4U67 W;  1YJW W;  3CCR W;  3CCU W;  3CCM W;  3O2O A;  1VQL W;  1K73 X;  3DNJ A; 
#chains in the Genus database with same CATH homology
 3CD6 W;  3CC2 W;  4IOC W;  2ZJP W;  1Q82 X;  1QVG V;  1KQS V;  1QVF V;  4IOA W;  2ZJR W;  3CXC V;  3G71 W;  1VQ7 W;  3CCL W;  5JVH W;  1Q81 X;  3I56 W;  3CC4 W;  3G4S W;  1KD1 X;  4WFN W;  1VQK W;  1VQP W;  1M1K X;  3DLL W;  2ZJQ W;  5GAG a;  1VQO W;  3CMA W;  4WFA W;  4C1N A;  3G6E W;  1S72 W;  1K9M X;  3CCJ W;  5DM7 W;  3CCQ W;  2OTJ W;  1VQ5 W;  5GAD a;  1VQ4 W;  5HL7 W;  1YIT W;  1YJ9 W;  3OW2 V;  1YI2 W;  3CC7 W;  5JVG W;  1VQ6 W;  4IO9 W;  2QA4 W;  1M90 X;  1N8R X;  3CCE W;  1W2B V;  1KC8 X;  3J7Z Z;  1VQ8 W;  4WF9 W;  1VQM W;  3I55 W;  3CME W;  3CCS W;  1K8A X;  1YIJ W;  3CF5 W;  1JJ2 V;  1YHQ W;  1VQN W;  3CCV W;  3PIO W;  3PIP W;  1VQ9 W;  5GAH a;  1YJN W;  2QEX W;  1NJI X;  1Q86 X;  1BXY A;  3CPW V;  4WFB W;  1Q7Y X;  4UY8 Z;  4WCE W;  2OTL W;  5GAE a;  5DM6 W;  4U67 W;  1YJW W;  3CCR W;  3CCU W;  3CCM W;  1VQL W;  1K73 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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