1QYUA

Structure of the catalytic domain of 23s rrna pseudouridine synthase rlud
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
250
structure length
250
Chain Sequence
FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ribosomal large subunit pseudouridine synthase D
publication title Crystal structure of the catalytic domain of RluD, the only rRNA pseudouridine synthase required for normal growth of Escherichia coli
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 68
structure length 250
sequence length 250
ec nomenclature ec 5.4.99.23: 23S rRNA pseudouridine(1911/1915/1917) synthase.
pdb deposition date 2003-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
A PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1qyuA01
1QYUA 3HJYA 3LWVA 3HJWA 1KSVA 3MQKA 1ZE2A 2AB4A 1ZE1A 1SGVA 1K8WA 4LABA 4LGTA 3LWQA 2ISTA 2RFKA 1XPIA 1ZL3A 3LWOA 3HAXA 1PRZA 1V9FA 3U28A 1V9KA 2EY4A 1R3EA 2AUSA 3LWPA 2APOA 3LWRA 2I82A 1KSKA 3UAIA 1KSLA 3DH3A 2HVYA 1R3FA
chains in the Genus database with same CATH superfamily
1QYUA 3HJYA 3LWVA 3HJWA 1KSVA 1SB7A 3MQKA 1ZE2A 2AB4A 1ZE1A 1SGVA 1K8WA 4LABA 4LGTA 3LWQA 2ISTA 2RFKA 1Z2ZA 1XPIA 1ZL3A 3LWOA 3HAXA 1PRZA 1V9FA 3U28A 1V9KA 1SZWA 2EY4A 1R3EA 2AUSA 3LWPA 2APOA 3LWRA 2I82A 1KSKA 3UAIA 1SI7A 1KSLA 3DH3A 2HVYA 1R3FA
chains in the Genus database with same CATH topology
1QYUA 3HJYA 3LWVA 3HJWA 1KSVA 1SB7A 3MQKA 1ZE2A 2AB4A 1ZE1A 1SGVA 1K8WA 4LABA 4LGTA 3LWQA 2ISTA 2RFKA 1Z2ZA 1XPIA 1ZL3A 3LWOA 3HAXA 1PRZA 1V9FA 3U28A 1V9KA 1SZWA 2EY4A 1R3EA 2AUSA 3LWPA 2APOA 3LWRA 2I82A 1KSKA 3UAIA 1SI7A 1KSLA 3DH3A 2HVYA 1R3FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QYU A;  3HJY A;  3LWV A;  3HJW A;  1KSV A;  3MQK A;  1ZE2 A;  2AB4 A;  1ZE1 A;  1SGV A;  1K8W A;  4LAB A;  4LGT A;  3LWQ A;  2IST A;  2RFK A;  1XPI A;  1ZL3 A;  3LWO A;  3HAX A;  1PRZ A;  1V9F A;  3U28 A;  1V9K A;  2EY4 A;  1R3E A;  2AUS A;  3LWP A;  2APO A;  3LWR A;  2I82 A;  1KSK A;  3UAI A;  1KSL A;  3DH3 A;  2HVY A;  1R3F A; 
#chains in the Genus database with same CATH topology
 1QYU A;  3HJY A;  3LWV A;  3HJW A;  1KSV A;  1SB7 A;  3MQK A;  1ZE2 A;  2AB4 A;  1ZE1 A;  1SGV A;  1K8W A;  4LAB A;  4LGT A;  3LWQ A;  2IST A;  2RFK A;  1Z2Z A;  1XPI A;  1ZL3 A;  3LWO A;  3HAX A;  1PRZ A;  1V9F A;  3U28 A;  1V9K A;  1SZW A;  2EY4 A;  1R3E A;  2AUS A;  3LWP A;  2APO A;  3LWR A;  2I82 A;  1KSK A;  3UAI A;  1SI7 A;  1KSL A;  3DH3 A;  2HVY A;  1R3F A; 
#chains in the Genus database with same CATH homology
 1QYU A;  3HJY A;  3LWV A;  3HJW A;  1KSV A;  1SB7 A;  3MQK A;  1ZE2 A;  2AB4 A;  1ZE1 A;  1SGV A;  1K8W A;  4LAB A;  4LGT A;  3LWQ A;  2IST A;  2RFK A;  1Z2Z A;  1XPI A;  1ZL3 A;  3LWO A;  3HAX A;  1PRZ A;  1V9F A;  3U28 A;  1V9K A;  1SZW A;  2EY4 A;  1R3E A;  2AUS A;  3LWP A;  2APO A;  3LWR A;  2I82 A;  1KSK A;  3UAI A;  1SI7 A;  1KSL A;  3DH3 A;  2HVY A;  1R3F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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