1R084

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule tags Virus
source organism Human rhinovirus 14
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1r08400
1K5MD 2RM24 2PLV4 2RS34 1AL24 1RUC4 2HWB4 4Q4Y4 3J8F4 1RUE4 1BEV4 1R084 1RUD4 1COV4 1HRI4 1AR74 1AR84 1RUF4 2HWC4 2RS14 2R074 1VBC4 4Q4V4 1NCQD 1PIV4 1RUJ4 1EV14 1MQTD 1RUH4 1VBE4 2RMU4 3JBG4 1AR64 4RHV4 4Q4X4 1HXS4 1RMU4 1RVF4 4Q4W4 4PDWD 1VRH4 2R064 1VBB4 1ASJ4 2X5ID 1RUG4 1D4M4 1NA1D 1PVC4 1RUI4 1HRV4 1Z7S4 1PO24 2RR14 1VBA4 1VBD4 1R094 1EAH4 1RHI4 1PO14 1H8TD 1OOPD 1POV0 2R044 3JD74 4GB34 2RS54 1AR94
chains in the Genus database with same CATH superfamily
2WU5A 3AEAA 1RUE4 1RUD4 3AE8A 1YQ4A 2R074 1NCQD 2EX3A 3CIRA 1MQTD 3SFEA 1RVF4 1XI1A 1ZOYA 2WS3A 3P4QA 1RUI4 1Z7S4 1PO24 2H88A 1VBA4 2ACZA 1RHI4 3JD74 1NEKA 1AR94 3P4RA 4YXDA 2PLV4 1KFYA 1RUC4 2HWB4 2RS14 1HRI4 1RUF4 2HWC4 3SUCA 3AE7A 2WP9A 3AE9A 4Q4V4 1PIV4 1RUJ4 1VBE4 1AR64 1HXS4 1RMU4 2B76A 4Q4W4 4YTNA 1VBB4 1ASJ4 2PY5A 3P4PA 1L0VA 3VRAA 2RR14 4YTPA 2R7FA 4KX6A 2H89A 2RS54 1ZP0A 1K5MD 1AL24 3AE4A 4Q4Y4 2PW9A 1R084 5C3JA 1AR74 1AR84 2FBWA 3AE1A 4YSZA 1VBC4 1RUH4 3GQHA 4RHV4 3JBG4 4Q4X4 2WU2A 4YT0A 3AE6A 2X5ID 1HRV4 1NA1D 3VR8A 3GQKA 1PO14 1H8TD 1OOPD 4GB34 2WDQA 5C2TA 4YSXA 1XHZA 2RM24 2RS34 3J8F4 2PYLA 1BEV4 3AE5A 1COV4 3ABVA 2WDRA 2PYJA 2WDVA 2RMU4 3AEGA 1EV14 3AEEA 3VR9A 3AEFA 2PZSA 1YQ3A 4YTMA 4PDWD 1VRH4 3VRBA 2R064 3AE2A 1NENA 3FI7A 1RUG4 1D4M4 1PVC4 1XHXA 3P4SA 3AECA 1VBD4 1KF6A 1EAH4 1R094 3AEBA 1POV0 2WQYA 2R044 3AE3A 3AEDA 4YSYA 3SFDA
chains in the Genus database with same CATH topology
1K5MD 2RM24 2PLV4 2RS34 1AL24 1RUC4 2HWB4 4Q4Y4 3J8F4 1RUE4 1BEV4 1R084 1RUD4 1COV4 1HRI4 1AR74 1AR84 1RUF4 2HWC4 2RS14 2R074 1VBC4 4Q4V4 1NCQD 1PIV4 1RUJ4 1EV14 1MQTD 1RUH4 1VBE4 2RMU4 3JBG4 1AR64 4RHV4 4Q4X4 1HXS4 1RMU4 1RVF4 4Q4W4 4PDWD 1VRH4 2R064 1VBB4 1ASJ4 2X5ID 1RUG4 1D4M4 1NA1D 1PVC4 1RUI4 1HRV4 1Z7S4 1PO24 2RR14 1VBA4 1VBD4 1R094 1EAH4 1RHI4 1PO14 1H8TD 1OOPD 1POV0 2R044 3JD74 4GB34 2RS54 1AR94
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K5M D;  2RM2 4;  2PLV 4;  2RS3 4;  1AL2 4;  1RUC 4;  2HWB 4;  4Q4Y 4;  3J8F 4;  1RUE 4;  1BEV 4;  1R08 4;  1RUD 4;  1COV 4;  1HRI 4;  1AR7 4;  1AR8 4;  1RUF 4;  2HWC 4;  2RS1 4;  2R07 4;  1VBC 4;  4Q4V 4;  1NCQ D;  1PIV 4;  1RUJ 4;  1EV1 4;  1MQT D;  1RUH 4;  1VBE 4;  2RMU 4;  3JBG 4;  1AR6 4;  4RHV 4;  4Q4X 4;  1HXS 4;  1RMU 4;  1RVF 4;  4Q4W 4;  4PDW D;  1VRH 4;  2R06 4;  1VBB 4;  1ASJ 4;  2X5I D;  1RUG 4;  1D4M 4;  1NA1 D;  1PVC 4;  1RUI 4;  1HRV 4;  1Z7S 4;  1PO2 4;  2RR1 4;  1VBA 4;  1VBD 4;  1R09 4;  1EAH 4;  1RHI 4;  1PO1 4;  1H8T D;  1OOP D;  1POV 0;  2R04 4;  3JD7 4;  4GB3 4;  2RS5 4;  1AR9 4; 
#chains in the Genus database with same CATH topology
 2WU5 A;  3AEA A;  1RUE 4;  1RUD 4;  3AE8 A;  1YQ4 A;  2R07 4;  1NCQ D;  2EX3 A;  3CIR A;  1MQT D;  3SFE A;  1RVF 4;  1XI1 A;  1ZOY A;  2WS3 A;  3P4Q A;  1RUI 4;  1Z7S 4;  1PO2 4;  2H88 A;  1VBA 4;  2ACZ A;  1RHI 4;  3JD7 4;  1NEK A;  1AR9 4;  3P4R A;  4YXD A;  2PLV 4;  1KFY A;  1RUC 4;  2HWB 4;  2RS1 4;  1HRI 4;  1RUF 4;  2HWC 4;  3SUC A;  3AE7 A;  2WP9 A;  3AE9 A;  4Q4V 4;  1PIV 4;  1RUJ 4;  1VBE 4;  1AR6 4;  1HXS 4;  1RMU 4;  2B76 A;  4Q4W 4;  4YTN A;  1VBB 4;  1ASJ 4;  2PY5 A;  3P4P A;  1L0V A;  3VRA A;  2RR1 4;  4YTP A;  2R7F A;  4KX6 A;  2H89 A;  2RS5 4;  1ZP0 A;  1K5M D;  1AL2 4;  3AE4 A;  4Q4Y 4;  2PW9 A;  1R08 4;  5C3J A;  1AR7 4;  1AR8 4;  2FBW A;  3AE1 A;  4YSZ A;  1VBC 4;  1RUH 4;  3GQH A;  4RHV 4;  3JBG 4;  4Q4X 4;  2WU2 A;  4YT0 A;  3AE6 A;  2X5I D;  1HRV 4;  1NA1 D;  3VR8 A;  3GQK A;  1PO1 4;  1H8T D;  1OOP D;  4GB3 4;  2WDQ A;  5C2T A;  4YSX A;  1XHZ A;  2RM2 4;  2RS3 4;  3J8F 4;  2PYL A;  1BEV 4;  3AE5 A;  1COV 4;  3ABV A;  2WDR A;  2PYJ A;  2WDV A;  2RMU 4;  3AEG A;  1EV1 4;  3AEE A;  3VR9 A;  3AEF A;  2PZS A;  1YQ3 A;  4YTM A;  4PDW D;  1VRH 4;  3VRB A;  2R06 4;  3AE2 A;  1NEN A;  3FI7 A;  1RUG 4;  1D4M 4;  1PVC 4;  1XHX A;  3P4S A;  3AEC A;  1VBD 4;  1KF6 A;  1EAH 4;  1R09 4;  3AEB A;  1POV 0;  2WQY A;  2R04 4;  3AE3 A;  3AED A;  4YSY A;  3SFD A; 
#chains in the Genus database with same CATH homology
 1K5M D;  2RM2 4;  2PLV 4;  2RS3 4;  1AL2 4;  1RUC 4;  2HWB 4;  4Q4Y 4;  3J8F 4;  1RUE 4;  1BEV 4;  1R08 4;  1RUD 4;  1COV 4;  1HRI 4;  1AR7 4;  1AR8 4;  1RUF 4;  2HWC 4;  2RS1 4;  2R07 4;  1VBC 4;  4Q4V 4;  1NCQ D;  1PIV 4;  1RUJ 4;  1EV1 4;  1MQT D;  1RUH 4;  1VBE 4;  2RMU 4;  3JBG 4;  1AR6 4;  4RHV 4;  4Q4X 4;  1HXS 4;  1RMU 4;  1RVF 4;  4Q4W 4;  4PDW D;  1VRH 4;  2R06 4;  1VBB 4;  1ASJ 4;  2X5I D;  1RUG 4;  1D4M 4;  1NA1 D;  1PVC 4;  1RUI 4;  1HRV 4;  1Z7S 4;  1PO2 4;  2RR1 4;  1VBA 4;  1VBD 4;  1R09 4;  1EAH 4;  1RHI 4;  1PO1 4;  1H8T D;  1OOP D;  1POV 0;  2R04 4;  3JD7 4;  4GB3 4;  2RS5 4;  1AR9 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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