1R0HA

Cobalt-substituted rubredoxin
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Metal-substituted derivatives of the rubredoxin from Clostridium pasteurianum.
pubmed doi rcsb
molecule tags Electron transport
source organism Clostridium pasteurianum
molecule keywords Rubredoxin
total genus 8
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2003-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1r0hA00
4ME3A 2KKDA 2M4YA 1SMMA 5AI3A 1JYBA 3KYWA 1R0FA 1BRFA 1B2OA 2K2DA 1B2JA 1E8JA 2LCQA 1YV1A 4YWMA 1ZRPA 1H7VA 1T9OA 1RYTA 1IU6A 2PVXA 1YUZA 1FHMA 3RYGA 1IU5A 2VL6A 1R0JA 4YWLA 1BQ9A 3RZTA 1BE7A 1T9QA 1LKOA 1BQ8A 3QVDA 3PZAA 4POFA 1YK4A 1SMWA 2HR5A 1YUXA 1QYBA 1S30A 1RDVA 5AI2A 1LTLA 1NNQA 1RWDA 4K9FA 1IROA 1LKMA 2V3BB 1IRNA 1RDGA 2DSXA 3KYYA 1B13A 3RZ6A 2GMGA 1C09A 3A44A 2PYAA 8RXNA 1SMUA 4TPUA 1QCVA 2QL0A 1VCXA 3KYXA 4POGA 1DX8A 3MPSA 4AR5A 3KYVA 1T9PA 3SS2A 1DVBA 1YK5A 4AR4A 1R0HA 1R0GA 2RDVA 5RXNA 6RXNA 4AR6A 4AR3A 5IY0A 7RXNA 3PWFA 4RXNA 1CADA 1R0IA 1S2ZA 1LKPA 3KYUA 2KN9A 1B71A 1S24A 1BFYA 1CAAA 2MS3A 1RB9A 2PVEA 1FHHA
chains in the Genus database with same CATH superfamily
3P8BA 5GAEc 3RZOL 1BRFA 2LCQA 3S16L 5FJ8L 4Y7NL 1ZRPA 1H7VA 4AYBP 1RYTA 3I4ML 1FHMA 2XJQA 3JR7A 3HKZP 2VL6A 1R0JA 3WWNB 5IYCL 2V0FA 5MFPA 2WAQP 3VPBE 5C44L 1BE7A 1T9QA 3QVDA 4POFA 1TWHL 3PIP1 3LWRB 2NVQL 1QYBA 3IU3I 1RDVA 3GTJL 2L0ZA 1NNQA 1SFOL 2WB1P 1RWDA 4K9FA 2NYDA 1QQTA 1LKMA 3HOZL 3WWLA 1TWGL 4A3KL 2V3BB 3H0GL 2M4VA 5M5XL 1B13A 2GMGA 4AI0A 3H3VM 1I3QL 2PYAA 1SMUA 4TPUA 4A3JL 1Y1WL 4POGA 4AR5A 3I4NL 3H9CA 3NFPI 3KYVA 4JAFA 3SS2A 1DVBA 1YK5A 4ZN3B 1OWCA 3HJWB 1PFWA 3LWVB 5DM71 5M5WL 3HOWL 3PWFA 2VUML 3HJYB 4JAEA 3P2AA 1B71A 3GTKL 5JVG1 2B63L 4ZN1B 3HAXC 4JADA 5MLC3 3S1RL 4C3IL 3QQCE 1R0FA 1B2OA 2K2DA 5C3EL 2JI3A 1T9OA 3B08B 5EINC 3HOUL 2ERJA 4AI3A 3RYGA 1BQ9A 2C6AA 4X6AL 3RZTA 3B0AB 4BY1L 3H99A 4QIWP 4A3BL 3FDJA 2JA8L 2R7ZL 3S2DL 2PPTA 2A6HD 3S17L 4AHWA 1YUXA 3GTQL 4A3DL 1S30A 1R9TL 1Y1VL 5M3ML 2JA7L 5AI2A 5C4XL 1K83L 4B8CD 3PKIA 3HOVL 5H1Sc 1RDGA 3K35A 4AHXA 2XJUA 1Z92B 3CQZL 3PIO1 1C09A 5GAGc 4C3JL 1QCVA 2A6ED 5IYBL 1I6HL 2C6BA 3KYXA 1DX8A 3M4OL 3S1QL 2V0EA 1PFUA 4AHYA 2XJVA 5MFZA 5M5YL 1R0GA 4XXBB 2M6PA 2Y0SP 6RXNA 3FKIL 4A3IL 1VZGA 2BE5D 4RXNA 2AYJA 2Z3QB 1TWFL 1S24A 1WCML 3PO2L 2MS3A 1NXGA 2E2JL 3LWOB 2PVEA 4YWLA 2PMZP 3H97A 2JA6L 2ERSA 3GTOL 1SMMA 2A68D 5EIOC 5AI3A 5C4JL 2EY4E 4AI1A 4V196 2AQCA 3PO3L 4E6YA 1B2JA 1VZHA 1E8JA 3LWPB 1YV1A 1VZIA 3LNLA 2APOB 4A3GL 2A69D 4U671 1PFYA 1IU5A 2ZIXA 5MF6A 3H9BA 3S14L 2AUSB 2CR8A 1LKOA 1YK4A 1SMWA 2CKCA 5GADc 2XJPA 1OWBA 1RYQA 1I50L 4BBSL 3J7Z1 1LTLA 4C2M1 2NVXL 3LPEB 3GTGL 2YU9L 4XGHA 4JAGA 1IROA 1IRNA 4GS7D 2DSXA 3ZG6A 3RZ6A 4UY81 3A44A 2CKAA 2H12A 3HOYL 2QL0A 1VCXA 4A3LL 1PFVA 1PZXA 4AI2A 4A3ML 1NXEA 1IW7D 2B5ID 2O5JD 1T9PA 3MSUA 4AR4A 1R0HA 2HVYC 3GTML 2NVYL 3S2HL 3PL5A 2XJSA 4AHZA 2RDVA 4BXXL 3K7AL 5RXNA 4AR6A 4AR3A 5IY0A 7RXNA 2M6OA 5K2ME 5FLML 1CADA 2XJRA 4C3HL 3KYUA 2KN9A 2NVTL 4A3CL 2XJTA 1CAAA 4LHLA 1FHHA 4ME3A 2KKDA 4A3FL 2M4YA 1JYBA 3KYWA 3HOXL 4YWMA 4LHNA 1TWCL 3LWQB 3S1NL 1IU6A 2PVXA 1YUZA 3S15L 4A93L 4WFN1 5GAHc 4Y52L 1BQ8A 3PZAA 3MQKB 2HR5A 2J9UB 4G6BA 5IYDL 3S1ML 2RFKB 1F4LA 3M3YL 4BY7L 2JI1A 5IP7L 4TVMA 3KYYA 3GTPL 5DM61 5JVH1 3RZDL 2E2HL 8RXNA 2Z3RB 5IP9L 3MPSA 5MGNA 2E2IL 2R92L 1WJVA 3GTLL 2JA5L 2JI2A 4A3EL 4BBRL 3PKJA 2R93L 5AN9H 1R0IA 1S2ZA 1LKPA 2PSMC 1ODHA 5M3FL 1TWAL 1BFYA 3J7Y1 1P7PA 1RB9A
chains in the Genus database with same CATH topology
4ME3A 2ERSA 2KKDA 3P8BA 2M4YA 1SMMA 2A68D 5EIOC 5AI3A 1JYBA 3QQCE 4V196 4AI1A 5GAEc 3KYWA 1R0FA 1BRFA 1B2OA 4E6YA 2K2DA 1B2JA 1VZHA 1E8JA 2LCQA 1YV1A 1VZIA 3LNLA 4YWMA 1ZRPA 1H7VA 4LHNA 2JI3A 1T9OA 2A69D 1RYTA 1IU6A 4U671 3B08B 5EINC 2ERJA 2PVXA 1YUZA 1FHMA 4AI3A 3RYGA 2XJQA 1IU5A 2ZIXA 5MF6A 2VL6A 1R0JA 3WWNB 4YWLA 1BQ9A 2C6AA 2V0FA 5MFPA 3RZTA 3B0AB 3VPBE 4WFN1 1BE7A 1T9QA 2CR8A 1LKOA 5GAHc 1BQ8A 3QVDA 3PZAA 4POFA 1YK4A 1SMWA 2CKCA 3PIP1 5GADc 2XJPA 2PPTA 2A6HD 2HR5A 1OWBA 4AHWA 1YUXA 1QYBA 1S30A 1RYQA 3IU3I 2J9UB 1RDVA 5AI2A 4G6BA 3J7Z1 1LTLA 2L0ZA 3LPEB 1NNQA 4XGHA 1RWDA 4JAGA 4K9FA 1IROA 2NYDA 1LKMA 3PKIA 4B8CD 3WWLA 5H1Sc 2JI1A 2V3BB 1IRNA 1RDGA 4GS7D 3K35A 2M4VA 4TVMA 4AHXA 2XJUA 2DSXA 1Z92B 3KYYA 3ZG6A 5DM61 1B13A 3RZ6A 5JVH1 4UY81 2GMGA 3PIO1 1C09A 3A44A 4AI0A 5GAGc 2CKAA 2H12A 2PYAA 8RXNA 1SMUA 4TPUA 1QCVA 2Z3RB 2QL0A 1VCXA 2A6ED 2C6BA 3KYXA 4POGA 4AI2A 1DX8A 1NXEA 3MPSA 4AR5A 1IW7D 2B5ID 5MGNA 3NFPI 3KYVA 2V0EA 1T9PA 1WJVA 4JAFA 3SS2A 1DVBA 2O5JD 1YK5A 2JI2A 3MSUA 4ZN3B 4AHYA 1R0HA 1OWCA 4AR4A 2XJVA 5MFZA 1R0GA 4AHZA 2XJSA 5DM71 2RDVA 4XXBB 2M6PA 5RXNA 6RXNA 4AR6A 3PKJA 4AR3A 7RXNA 1VZGA 2BE5D 5IY0A 3PWFA 2M6OA 5K2ME 4RXNA 5AN9H 1CADA 2AYJA 1R0IA 1S2ZA 2Z3QB 1LKPA 4JAEA 2XJRA 3KYUA 3P2AA 2KN9A 1B71A 2PSMC 1ODHA 1S24A 5JVG1 1BFYA 2XJTA 3J7Y1 4ZN1B 1CAAA 1NXGA 2MS3A 1RB9A 4LHLA 2PVEA 1FHHA 4JADA 5MLC3
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ME3 A;  2KKD A;  2M4Y A;  1SMM A;  5AI3 A;  1JYB A;  3KYW A;  1R0F A;  1BRF A;  1B2O A;  2K2D A;  1B2J A;  1E8J A;  2LCQ A;  1YV1 A;  4YWM A;  1ZRP A;  1H7V A;  1T9O A;  1RYT A;  1IU6 A;  2PVX A;  1YUZ A;  1FHM A;  3RYG A;  1IU5 A;  2VL6 A;  1R0J A;  4YWL A;  1BQ9 A;  3RZT A;  1BE7 A;  1T9Q A;  1LKO A;  1BQ8 A;  3QVD A;  3PZA A;  4POF A;  1YK4 A;  1SMW A;  2HR5 A;  1YUX A;  1QYB A;  1S30 A;  1RDV A;  5AI2 A;  1LTL A;  1NNQ A;  1RWD A;  4K9F A;  1IRO A;  1LKM A;  2V3B B;  1IRN A;  1RDG A;  2DSX A;  3KYY A;  1B13 A;  3RZ6 A;  2GMG A;  1C09 A;  3A44 A;  2PYA A;  8RXN A;  1SMU A;  4TPU A;  1QCV A;  2QL0 A;  1VCX A;  3KYX A;  4POG A;  1DX8 A;  3MPS A;  4AR5 A;  3KYV A;  1T9P A;  3SS2 A;  1DVB A;  1YK5 A;  4AR4 A;  1R0H A;  1R0G A;  2RDV A;  5RXN A;  6RXN A;  4AR6 A;  4AR3 A;  5IY0 A;  7RXN A;  3PWF A;  4RXN A;  1CAD A;  1R0I A;  1S2Z A;  1LKP A;  3KYU A;  2KN9 A;  1B71 A;  1S24 A;  1BFY A;  1CAA A;  2MS3 A;  1RB9 A;  2PVE A;  1FHH A; 
#chains in the Genus database with same CATH topology
 3P8B A;  5GAE c;  3RZO L;  1BRF A;  2LCQ A;  3S16 L;  5FJ8 L;  4Y7N L;  1ZRP A;  1H7V A;  4AYB P;  1RYT A;  3I4M L;  1FHM A;  2XJQ A;  3JR7 A;  3HKZ P;  2VL6 A;  1R0J A;  3WWN B;  5IYC L;  2V0F A;  5MFP A;  2WAQ P;  3VPB E;  5C44 L;  1BE7 A;  1T9Q A;  3QVD A;  4POF A;  1TWH L;  3PIP 1;  3LWR B;  2NVQ L;  1QYB A;  3IU3 I;  1RDV A;  3GTJ L;  2L0Z A;  1NNQ A;  1SFO L;  2WB1 P;  1RWD A;  4K9F A;  2NYD A;  1QQT A;  1LKM A;  3HOZ L;  3WWL A;  1TWG L;  4A3K L;  2V3B B;  3H0G L;  2M4V A;  5M5X L;  1B13 A;  2GMG A;  4AI0 A;  3H3V M;  1I3Q L;  2PYA A;  1SMU A;  4TPU A;  4A3J L;  1Y1W L;  4POG A;  4AR5 A;  3I4N L;  3H9C A;  3NFP I;  3KYV A;  4JAF A;  3SS2 A;  1DVB A;  1YK5 A;  4ZN3 B;  1OWC A;  3HJW B;  1PFW A;  3LWV B;  5DM7 1;  5M5W L;  3HOW L;  3PWF A;  2VUM L;  3HJY B;  4JAE A;  3P2A A;  1B71 A;  3GTK L;  5JVG 1;  2B63 L;  4ZN1 B;  3HAX C;  4JAD A;  5MLC 3;  3S1R L;  4C3I L;  3QQC E;  1R0F A;  1B2O A;  2K2D A;  5C3E L;  2JI3 A;  1T9O A;  3B08 B;  5EIN C;  3HOU L;  2ERJ A;  4AI3 A;  3RYG A;  1BQ9 A;  2C6A A;  4X6A L;  3RZT A;  3B0A B;  4BY1 L;  3H99 A;  4QIW P;  4A3B L;  3FDJ A;  2JA8 L;  2R7Z L;  3S2D L;  2PPT A;  2A6H D;  3S17 L;  4AHW A;  1YUX A;  3GTQ L;  4A3D L;  1S30 A;  1R9T L;  1Y1V L;  5M3M L;  2JA7 L;  5AI2 A;  5C4X L;  1K83 L;  4B8C D;  3PKI A;  3HOV L;  5H1S c;  1RDG A;  3K35 A;  4AHX A;  2XJU A;  1Z92 B;  3CQZ L;  3PIO 1;  1C09 A;  5GAG c;  4C3J L;  1QCV A;  2A6E D;  5IYB L;  1I6H L;  2C6B A;  3KYX A;  1DX8 A;  3M4O L;  3S1Q L;  2V0E A;  1PFU A;  4AHY A;  2XJV A;  5MFZ A;  5M5Y L;  1R0G A;  4XXB B;  2M6P A;  2Y0S P;  6RXN A;  3FKI L;  4A3I L;  1VZG A;  2BE5 D;  4RXN A;  2AYJ A;  2Z3Q B;  1TWF L;  1S24 A;  1WCM L;  3PO2 L;  2MS3 A;  1NXG A;  2E2J L;  3LWO B;  2PVE A;  4YWL A;  2PMZ P;  3H97 A;  2JA6 L;  2ERS A;  3GTO L;  1SMM A;  2A68 D;  5EIO C;  5AI3 A;  5C4J L;  2EY4 E;  4AI1 A;  4V19 6;  2AQC A;  3PO3 L;  4E6Y A;  1B2J A;  1VZH A;  1E8J A;  3LWP B;  1YV1 A;  1VZI A;  3LNL A;  2APO B;  4A3G L;  2A69 D;  4U67 1;  1PFY A;  1IU5 A;  2ZIX A;  5MF6 A;  3H9B A;  3S14 L;  2AUS B;  2CR8 A;  1LKO A;  1YK4 A;  1SMW A;  2CKC A;  5GAD c;  2XJP A;  1OWB A;  1RYQ A;  1I50 L;  4BBS L;  3J7Z 1;  1LTL A;  4C2M 1;  2NVX L;  3LPE B;  3GTG L;  2YU9 L;  4XGH A;  4JAG A;  1IRO A;  1IRN A;  4GS7 D;  2DSX A;  3ZG6 A;  3RZ6 A;  4UY8 1;  3A44 A;  2CKA A;  2H12 A;  3HOY L;  2QL0 A;  1VCX A;  4A3L L;  1PFV A;  1PZX A;  4AI2 A;  4A3M L;  1NXE A;  1IW7 D;  2B5I D;  2O5J D;  1T9P A;  3MSU A;  4AR4 A;  1R0H A;  2HVY C;  3GTM L;  2NVY L;  3S2H L;  3PL5 A;  2XJS A;  4AHZ A;  2RDV A;  4BXX L;  3K7A L;  5RXN A;  4AR6 A;  4AR3 A;  5IY0 A;  7RXN A;  2M6O A;  5K2M E;  5FLM L;  1CAD A;  2XJR A;  4C3H L;  3KYU A;  2KN9 A;  2NVT L;  4A3C L;  2XJT A;  1CAA A;  4LHL A;  1FHH A;  4ME3 A;  2KKD A;  4A3F L;  2M4Y A;  1JYB A;  3KYW A;  3HOX L;  4YWM A;  4LHN A;  1TWC L;  3LWQ B;  3S1N L;  1IU6 A;  2PVX A;  1YUZ A;  3S15 L;  4A93 L;  4WFN 1;  5GAH c;  4Y52 L;  1BQ8 A;  3PZA A;  3MQK B;  2HR5 A;  2J9U B;  4G6B A;  5IYD L;  3S1M L;  2RFK B;  1F4L A;  3M3Y L;  4BY7 L;  2JI1 A;  5IP7 L;  4TVM A;  3KYY A;  3GTP L;  5DM6 1;  5JVH 1;  3RZD L;  2E2H L;  8RXN A;  2Z3R B;  5IP9 L;  3MPS A;  5MGN A;  2E2I L;  2R92 L;  1WJV A;  3GTL L;  2JA5 L;  2JI2 A;  4A3E L;  4BBR L;  3PKJ A;  2R93 L;  5AN9 H;  1R0I A;  1S2Z A;  1LKP A;  2PSM C;  1ODH A;  5M3F L;  1TWA L;  1BFY A;  3J7Y 1;  1P7P A;  1RB9 A; 
#chains in the Genus database with same CATH homology
 4ME3 A;  2ERS A;  2KKD A;  3P8B A;  2M4Y A;  1SMM A;  2A68 D;  5EIO C;  5AI3 A;  1JYB A;  3QQC E;  4V19 6;  4AI1 A;  5GAE c;  3KYW A;  1R0F A;  1BRF A;  1B2O A;  4E6Y A;  2K2D A;  1B2J A;  1VZH A;  1E8J A;  2LCQ A;  1YV1 A;  1VZI A;  3LNL A;  4YWM A;  1ZRP A;  1H7V A;  4LHN A;  2JI3 A;  1T9O A;  2A69 D;  1RYT A;  1IU6 A;  4U67 1;  3B08 B;  5EIN C;  2ERJ A;  2PVX A;  1YUZ A;  1FHM A;  4AI3 A;  3RYG A;  2XJQ A;  1IU5 A;  2ZIX A;  5MF6 A;  2VL6 A;  1R0J A;  3WWN B;  4YWL A;  1BQ9 A;  2C6A A;  2V0F A;  5MFP A;  3RZT A;  3B0A B;  3VPB E;  4WFN 1;  1BE7 A;  1T9Q A;  2CR8 A;  1LKO A;  5GAH c;  1BQ8 A;  3QVD A;  3PZA A;  4POF A;  1YK4 A;  1SMW A;  2CKC A;  3PIP 1;  5GAD c;  2XJP A;  2PPT A;  2A6H D;  2HR5 A;  1OWB A;  4AHW A;  1YUX A;  1QYB A;  1S30 A;  1RYQ A;  3IU3 I;  2J9U B;  1RDV A;  5AI2 A;  4G6B A;  3J7Z 1;  1LTL A;  2L0Z A;  3LPE B;  1NNQ A;  4XGH A;  1RWD A;  4JAG A;  4K9F A;  1IRO A;  2NYD A;  1LKM A;  3PKI A;  4B8C D;  3WWL A;  5H1S c;  2JI1 A;  2V3B B;  1IRN A;  1RDG A;  4GS7 D;  3K35 A;  2M4V A;  4TVM A;  4AHX A;  2XJU A;  2DSX A;  1Z92 B;  3KYY A;  3ZG6 A;  5DM6 1;  1B13 A;  3RZ6 A;  5JVH 1;  4UY8 1;  2GMG A;  3PIO 1;  1C09 A;  3A44 A;  4AI0 A;  5GAG c;  2CKA A;  2H12 A;  2PYA A;  8RXN A;  1SMU A;  4TPU A;  1QCV A;  2Z3R B;  2QL0 A;  1VCX A;  2A6E D;  2C6B A;  3KYX A;  4POG A;  4AI2 A;  1DX8 A;  1NXE A;  3MPS A;  4AR5 A;  1IW7 D;  2B5I D;  5MGN A;  3NFP I;  3KYV A;  2V0E A;  1T9P A;  1WJV A;  4JAF A;  3SS2 A;  1DVB A;  2O5J D;  1YK5 A;  2JI2 A;  3MSU A;  4ZN3 B;  4AHY A;  1R0H A;  1OWC A;  4AR4 A;  2XJV A;  5MFZ A;  1R0G A;  4AHZ A;  2XJS A;  5DM7 1;  2RDV A;  4XXB B;  2M6P A;  5RXN A;  6RXN A;  4AR6 A;  3PKJ A;  4AR3 A;  7RXN A;  1VZG A;  2BE5 D;  5IY0 A;  3PWF A;  2M6O A;  5K2M E;  4RXN A;  5AN9 H;  1CAD A;  2AYJ A;  1R0I A;  1S2Z A;  2Z3Q B;  1LKP A;  4JAE A;  2XJR A;  3KYU A;  3P2A A;  2KN9 A;  1B71 A;  2PSM C;  1ODH A;  1S24 A;  5JVG 1;  1BFY A;  2XJT A;  3J7Y 1;  4ZN1 B;  1CAA A;  1NXG A;  2MS3 A;  1RB9 A;  4LHL A;  2PVE A;  1FHH A;  4JAD A;  5MLC 3; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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