1R28A

Crystal structure of the b-cell lymphoma 6 (bcl6) btb domain to 2.2 angstrom
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
122
structure length
122
Chain Sequence
SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords B-cell lymphoma 6 protein
publication title Mechanism of SMRT corepressor recruitment by the BCL6 BTB domain.
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00651 BTB BTB/POZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 1r28A00
2VKPA 1VCBB 3L2OA 3GA1A 2IZVC 3ZRFB 4W9DB 2PPIA 4JGHC 2JZ3C 3M5BA 4B9KE 1FS1B 1R29A 3DRZA 3E4UA 5IBKA 1HV2A 3ZKJB 4U77A 4UYIA 3KVTA 1DSXA 3MKSA 1BUOA 4AWJB 4W9CB 2P1NA 1EOFA 4J8ZA 4BGCA 3FKCA 3OHUA 4W9HH 5EUPA 3LBZA 4W9JB 4BKTB 5BXHA 3DCGB 3LNMB 4U2NA 3ZTDB 1R28A 2Q81A 1A68A 3HVEB 4APFA 2OVRA 1S1GA 3ZNGB 5A6RA 4W9IB 3LUTB 1FS2B 3ZRCB 1FQVB 2A79B 3C6NA 5H7HA 4CRHA 1QDVA 2ASTA 2VPKA 3ZTCB 2P1OA 4AJYC 2FNJC 5H7GA 3BIMA 2IF5A 4I6JC 3HU6A 4B95B 3OGMA 1EXBE 3OGKA 2Z8HA 2P1MA 5BO4C 2P1PA 2OVQA 3ZUNB 1NN7A 5LLIB 4W9GB 4AP2A 5A15A 2E31B 3OHVA 4W9EB 2NN2A 2R9RB 5BXBA 5HZGC 3HQIA 3C6PA 3M52A 5BXDA 1EOEA 3I3NA 5DADA 1LQBB 3M4TA 4CXTA 3WSOB 1P22B 3OGLA 4HXIA 2NZ0B 4B9KB 5FTAA 1LM8C 4W9LB 1EODA 4EOZA 3B84A 4W9FB 2ASSA 2I2RA 3C6OA 3V7DA 3M8VA 4JTAB 4WQOC 1LDKD 2E32B 1CS3A 1QDWA 2OVPA 2YY9A 5DAFA 4CXJA 2IHCA 4JTCB 4CXIA 2P1QA 4W9KB 5HYWB 2C9WC 4ZOUA 4BKSB 5JH5B 4UIJA 1NEXA 4JTDB 3HTMA 4CP3A 4W9HB 1R2BA 2MA9C 4N9F5 4U2MA 3HVEA 1T1DA
chains in the Genus database with same CATH superfamily
2VKPA 1VCBB 3L2OA 3GA1A 2IZVC 3ZRFB 4W9DB 2PPIA 4JGHC 2JZ3C 3M5BA 4B9KE 1FS1B 1R29A 3DRZA 3E4UA 5IBKA 1HV2A 3ZKJB 4YY8A 4U77A 4UYIA 3KVTA 1DSXA 3MKSA 1BUOA 4AWJB 4W9CB 2P1NA 1EOFA 4J8ZA 4BGCA 3FKCA 3OHUA 4W9HH 5EUPA 3LBZA 4W9JB 4BKTB 5BXHA 3DCGB 3LNMB 4U2NA 3ZTDB 1R28A 2Q81A 1A68A 3HVEB 4APFA 2OVRA 1S1GA 3ZNGB 5A6RA 4W9IB 3LUTB 1FS2B 3DRXA 1FQVB 2A79B 3C6NA 5H7HA 3ZRCB 4CRHA 1QDVA 2ASTA 2VPKA 3ZTCB 2P1OA 4AJYC 2FNJC 5H7GA 3BIMA 2IF5A 4I6JC 3HU6A 3DRYA 4B95B 3OGMA 1EXBE 3OGKA 2Z8HA 2P1MA 5BO4C 4ZGCA 2P1PA 2OVQA 3ZUNB 1NN7A 5LLIB 4W9GB 4AP2A 5A15A 2E31B 3OHVA 4W9EB 2NN2A 2R9RB 5BXBA 5HZGC 3HQIA 3C6PA 3M52A 5BXDA 1EOEA 3I3NA 5DADA 1LQBB 3M4TA 4CXTA 3WSOB 1P22B 3OGLA 4HXIA 2NZ0B 4B9KB 5FTAA 1LM8C 4W9LB 1EODA 4EOZA 3B84A 4W9FB 2ASSA 2I2RA 3C6OA 3V7DA 3M8VA 4JTAB 4WQOC 1LDKD 2E32B 1CS3A 1QDWA 2OVPA 2YY9A 5DAFA 4CXJA 2IHCA 4JTCB 4CXIA 2P1QA 4W9KB 5HYWB 2C9WC 4ZOUA 4BKSB 5JH5B 4UIJA 1NEXA 4JTDB 3HTMA 4CP3A 4W9HB 1R2BA 2MA9C 4N9F5 4U2MA 3HVEA 1T1DA
chains in the Genus database with same CATH topology
2VKPA 1VCBB 3L2OA 3GA1A 2IZVC 3ZRFB 4W9DB 2PPIA 4JGHC 2JZ3C 3M5BA 4B9KE 1FS1B 1R29A 3DRZA 3E4UA 5IBKA 1HV2A 3ZKJB 4YY8A 4U77A 4UYIA 3KVTA 1DSXA 3MKSA 1BUOA 4AWJB 4W9CB 2P1NA 1EOFA 4J8ZA 4BGCA 3FKCA 3OHUA 4W9HH 5EUPA 3LBZA 4W9JB 4BKTB 5BXHA 3DCGB 3LNMB 4U2NA 3ZTDB 1R28A 2Q81A 1A68A 3HVEB 4APFA 2OVRA 1S1GA 3ZNGB 5A6RA 4W9IB 3LUTB 1FS2B 3DRXA 1FQVB 2A79B 3C6NA 5H7HA 3ZRCB 4CRHA 1QDVA 2ASTA 2VPKA 3ZTCB 2P1OA 4AJYC 2FNJC 5H7GA 3BIMA 2IF5A 4I6JC 3HU6A 3DRYA 4B95B 3OGMA 1EXBE 3OGKA 2Z8HA 2P1MA 5BO4C 4ZGCA 2P1PA 2OVQA 3ZUNB 1NN7A 5LLIB 4W9GB 4AP2A 5A15A 2E31B 3OHVA 4W9EB 2NN2A 2R9RB 5BXBA 5HZGC 3HQIA 3C6PA 3M52A 5BXDA 1EOEA 3I3NA 5DADA 1LQBB 3M4TA 4CXTA 3WSOB 1P22B 3OGLA 4HXIA 2NZ0B 4B9KB 5FTAA 1LM8C 4W9LB 1EODA 4EOZA 3B84A 4W9FB 2ASSA 2I2RA 3C6OA 3V7DA 3M8VA 4JTAB 4WQOC 1LDKD 2E32B 1CS3A 1QDWA 2OVPA 2YY9A 5DAFA 4CXJA 2IHCA 4JTCB 4CXIA 2P1QA 4W9KB 5HYWB 2C9WC 4ZOUA 4BKSB 5JH5B 4UIJA 1NEXA 4JTDB 3HTMA 4CP3A 4W9HB 1R2BA 2MA9C 4N9F5 4U2MA 3HVEA 1T1DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VKP A;  1VCB B;  3L2O A;  3GA1 A;  2IZV C;  3ZRF B;  4W9D B;  2PPI A;  4JGH C;  2JZ3 C;  3M5B A;  4B9K E;  1FS1 B;  1R29 A;  3DRZ A;  3E4U A;  5IBK A;  1HV2 A;  3ZKJ B;  4U77 A;  4UYI A;  3KVT A;  1DSX A;  3MKS A;  1BUO A;  4AWJ B;  4W9C B;  2P1N A;  1EOF A;  4J8Z A;  4BGC A;  3FKC A;  3OHU A;  4W9H H;  5EUP A;  3LBZ A;  4W9J B;  4BKT B;  5BXH A;  3DCG B;  3LNM B;  4U2N A;  3ZTD B;  1R28 A;  2Q81 A;  1A68 A;  3HVE B;  4APF A;  2OVR A;  1S1G A;  3ZNG B;  5A6R A;  4W9I B;  3LUT B;  1FS2 B;  3ZRC B;  1FQV B;  2A79 B;  3C6N A;  5H7H A;  4CRH A;  1QDV A;  2AST A;  2VPK A;  3ZTC B;  2P1O A;  4AJY C;  2FNJ C;  5H7G A;  3BIM A;  2IF5 A;  4I6J C;  3HU6 A;  4B95 B;  3OGM A;  1EXB E;  3OGK A;  2Z8H A;  2P1M A;  5BO4 C;  2P1P A;  2OVQ A;  3ZUN B;  1NN7 A;  5LLI B;  4W9G B;  4AP2 A;  5A15 A;  2E31 B;  3OHV A;  4W9E B;  2NN2 A;  2R9R B;  5BXB A;  5HZG C;  3HQI A;  3C6P A;  3M52 A;  5BXD A;  1EOE A;  3I3N A;  5DAD A;  1LQB B;  3M4T A;  4CXT A;  3WSO B;  1P22 B;  3OGL A;  4HXI A;  2NZ0 B;  4B9K B;  5FTA A;  1LM8 C;  4W9L B;  1EOD A;  4EOZ A;  3B84 A;  4W9F B;  2ASS A;  2I2R A;  3C6O A;  3V7D A;  3M8V A;  4JTA B;  4WQO C;  1LDK D;  2E32 B;  1CS3 A;  1QDW A;  2OVP A;  2YY9 A;  5DAF A;  4CXJ A;  2IHC A;  4JTC B;  4CXI A;  2P1Q A;  4W9K B;  5HYW B;  2C9W C;  4ZOU A;  4BKS B;  5JH5 B;  4UIJ A;  1NEX A;  4JTD B;  3HTM A;  4CP3 A;  4W9H B;  1R2B A;  2MA9 C;  4N9F 5;  4U2M A;  3HVE A;  1T1D A; 
#chains in the Genus database with same CATH topology
 2VKP A;  1VCB B;  3L2O A;  3GA1 A;  2IZV C;  3ZRF B;  4W9D B;  2PPI A;  4JGH C;  2JZ3 C;  3M5B A;  4B9K E;  1FS1 B;  1R29 A;  3DRZ A;  3E4U A;  5IBK A;  1HV2 A;  3ZKJ B;  4YY8 A;  4U77 A;  4UYI A;  3KVT A;  1DSX A;  3MKS A;  1BUO A;  4AWJ B;  4W9C B;  2P1N A;  1EOF A;  4J8Z A;  4BGC A;  3FKC A;  3OHU A;  4W9H H;  5EUP A;  3LBZ A;  4W9J B;  4BKT B;  5BXH A;  3DCG B;  3LNM B;  4U2N A;  3ZTD B;  1R28 A;  2Q81 A;  1A68 A;  3HVE B;  4APF A;  2OVR A;  1S1G A;  3ZNG B;  5A6R A;  4W9I B;  3LUT B;  1FS2 B;  3DRX A;  1FQV B;  2A79 B;  3C6N A;  5H7H A;  3ZRC B;  4CRH A;  1QDV A;  2AST A;  2VPK A;  3ZTC B;  2P1O A;  4AJY C;  2FNJ C;  5H7G A;  3BIM A;  2IF5 A;  4I6J C;  3HU6 A;  3DRY A;  4B95 B;  3OGM A;  1EXB E;  3OGK A;  2Z8H A;  2P1M A;  5BO4 C;  4ZGC A;  2P1P A;  2OVQ A;  3ZUN B;  1NN7 A;  5LLI B;  4W9G B;  4AP2 A;  5A15 A;  2E31 B;  3OHV A;  4W9E B;  2NN2 A;  2R9R B;  5BXB A;  5HZG C;  3HQI A;  3C6P A;  3M52 A;  5BXD A;  1EOE A;  3I3N A;  5DAD A;  1LQB B;  3M4T A;  4CXT A;  3WSO B;  1P22 B;  3OGL A;  4HXI A;  2NZ0 B;  4B9K B;  5FTA A;  1LM8 C;  4W9L B;  1EOD A;  4EOZ A;  3B84 A;  4W9F B;  2ASS A;  2I2R A;  3C6O A;  3V7D A;  3M8V A;  4JTA B;  4WQO C;  1LDK D;  2E32 B;  1CS3 A;  1QDW A;  2OVP A;  2YY9 A;  5DAF A;  4CXJ A;  2IHC A;  4JTC B;  4CXI A;  2P1Q A;  4W9K B;  5HYW B;  2C9W C;  4ZOU A;  4BKS B;  5JH5 B;  4UIJ A;  1NEX A;  4JTD B;  3HTM A;  4CP3 A;  4W9H B;  1R2B A;  2MA9 C;  4N9F 5;  4U2M A;  3HVE A;  1T1D A; 
#chains in the Genus database with same CATH homology
 2VKP A;  1VCB B;  3L2O A;  3GA1 A;  2IZV C;  3ZRF B;  4W9D B;  2PPI A;  4JGH C;  2JZ3 C;  3M5B A;  4B9K E;  1FS1 B;  1R29 A;  3DRZ A;  3E4U A;  5IBK A;  1HV2 A;  3ZKJ B;  4YY8 A;  4U77 A;  4UYI A;  3KVT A;  1DSX A;  3MKS A;  1BUO A;  4AWJ B;  4W9C B;  2P1N A;  1EOF A;  4J8Z A;  4BGC A;  3FKC A;  3OHU A;  4W9H H;  5EUP A;  3LBZ A;  4W9J B;  4BKT B;  5BXH A;  3DCG B;  3LNM B;  4U2N A;  3ZTD B;  1R28 A;  2Q81 A;  1A68 A;  3HVE B;  4APF A;  2OVR A;  1S1G A;  3ZNG B;  5A6R A;  4W9I B;  3LUT B;  1FS2 B;  3DRX A;  1FQV B;  2A79 B;  3C6N A;  5H7H A;  3ZRC B;  4CRH A;  1QDV A;  2AST A;  2VPK A;  3ZTC B;  2P1O A;  4AJY C;  2FNJ C;  5H7G A;  3BIM A;  2IF5 A;  4I6J C;  3HU6 A;  3DRY A;  4B95 B;  3OGM A;  1EXB E;  3OGK A;  2Z8H A;  2P1M A;  5BO4 C;  4ZGC A;  2P1P A;  2OVQ A;  3ZUN B;  1NN7 A;  5LLI B;  4W9G B;  4AP2 A;  5A15 A;  2E31 B;  3OHV A;  4W9E B;  2NN2 A;  2R9R B;  5BXB A;  5HZG C;  3HQI A;  3C6P A;  3M52 A;  5BXD A;  1EOE A;  3I3N A;  5DAD A;  1LQB B;  3M4T A;  4CXT A;  3WSO B;  1P22 B;  3OGL A;  4HXI A;  2NZ0 B;  4B9K B;  5FTA A;  1LM8 C;  4W9L B;  1EOD A;  4EOZ A;  3B84 A;  4W9F B;  2ASS A;  2I2R A;  3C6O A;  3V7D A;  3M8V A;  4JTA B;  4WQO C;  1LDK D;  2E32 B;  1CS3 A;  1QDW A;  2OVP A;  2YY9 A;  5DAF A;  4CXJ A;  2IHC A;  4JTC B;  4CXI A;  2P1Q A;  4W9K B;  5HYW B;  2C9W C;  4ZOU A;  4BKS B;  5JH5 B;  4UIJ A;  1NEX A;  4JTD B;  3HTM A;  4CP3 A;  4W9H B;  1R2B A;  2MA9 C;  4N9F 5;  4U2M A;  3HVE A;  1T1D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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