1R5XA

Jamm: a metalloprotease-like zinc site in the proteasome and signalosome
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
121
structure length
103
Chain Sequence
TLMKISRGLLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLPMKVFGTVHSHPSPSCRPSEEDLSLFTRFGKYHIIVCYPYDENSWKCYNRKGEEVELEVVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords AfJAMM
publication title JAMM: a metalloprotease-like zinc site in the proteasome and signalosome.
pubmed doi rcsb
source organism Archaeoglobus fulgidus
total genus 26
structure length 103
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14464 Prok-JAB Prokaryotic homologs of the JAB domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1r5xA00
4LD4A 2Z3IA 1TIYA 2HVWA 4NQLA 4K1RA 4OCNA 4OCLA 2D30A 1Z3AA 4ZD4A 4EG2A 1YSBA 2O96A 2W4LA 2G6VA 4D10F 2O95A 1UX1A 3B8FA 4O8YA 1OX7A 3RZUA 1UWZA 1UAQA 4O8YB 3DH1A 3ZPCA 4LC5A 4KITC 2OG4A 2ZNRA 4LCPA 2P87A 1ZABA 5DCAJ 2ZNVA 3MPZA 5M59B 4P9EA 4OWPA 2B3ZA 1AF2A 4P9CA 3OCQA 2D5NA 4MS7A 4LCOA 4OCNB 2NYTA 4OCLB 1WWRA 4O8XA 4OCMA 2A8NA 2Z3GA 2B3JA 4OCMB 2OBCA 2HVVA 4F7OA 2Z3HA 4MSQA 4ZFTA 2O7PA 1OI0A 1ALNA 4QFTA 3ZPGA 4WIGA 5C2OA 4P9DA 4BGDC 1RB7A 2Z3JA 4OWPB 2KKSA 2FR5A 2PW9A 2HXVA 1WN6A 1JTKA 3RZVA 2RPZA 1MQ0A 2FR6A 1CTTA 4G3MA 2QLCA 4LCNA 4O8XB 3G8QA 5CW6A 1R5XA 5GAOA 3DMOA 4ZFRA 4HRQA 2P8RA 4ILGC 5M52C 4WIFA 1R5TA 1YSDA 3IJFX 3SBGA 4LD2A 4I43B 3OJ6A 4MSJA 4JXEA 1WN5A 4ZD5A 4PQTA 4HRWA 4MSMA 2KCQA 1UX0A 4F3WA 3ZEFB 4MSDA 1VQ2A 3EX8A 2G84A 1P6OA 3R2NA 2O3KA 1WKQA 2NX8A 3E1UA 1CTUA 4E0QA
chains in the Genus database with same CATH superfamily
4LD4A 2Z3IA 1TIYA 1THZA 2HVWA 4NQLA 4K1RA 4OCNA 4OCLA 2D30A 1Z3AA 4ZD4A 4EG2A 1YSBA 2O96A 1P4RA 2W4LA 2G6VA 4D10F 3ZZMA 2O95A 4EHIA 1UX1A 3B8FA 1PL0A 4O8YA 1OX7A 3RZUA 1UWZA 1UAQA 4O8YB 3DH1A 3ZPCA 4LC5A 1M9NA 4KITC 2OG4A 2ZNRA 4LCPA 2P87A 1ZABA 1PKXA 5DCAJ 2ZNVA 3MPZA 5M59B 4J6EA 4P9EA 4OWPA 2B3ZA 1AF2A 2IU3A 4P9CA 3OCQA 2D5NA 4MS7A 4A1OA 4LCOA 4OCNB 2NYTA 4OCLB 1WWRA 4O8XA 4OCMA 2A8NA 2Z3GA 2B3JA 4OCMB 2OBCA 2HVVA 4F7OA 2Z3HA 4MSQA 4ZFTA 2B1GA 2O7PA 1OI0A 1ALNA 4QFTA 3ZPGA 4WIGA 5C2OA 4P9DA 4BGDC 1RB7A 2Z3JA 4GGMX 4OWPB 2KKSA 2IU0A 2FR5A 2PW9A 2HXVA 1WN6A 1JTKA 3RZVA 3VX8A 1OZ0A 1MQ0A 2FR6A 2RPZA 1CTTA 4G3MA 2QLCA 4LCNA 4O8XB 3G8QA 1ZCZA 5CW6A 1R5XA 5GAOA 3DMOA 4ZFRA 4HRQA 2P8RA 2B1IA 4ILGC 5M52C 4WIFA 1R5TA 1YSDA 1G8MA 3IJFX 3SBGA 4LD2A 4I43B 3OJ6A 4MSJA 4JXEA 1WN5A 3BH1A 4ZD5A 4PQTA 4HRWA 4MSMA 2KCQA 1UX0A 4F3WA 3ZEFB 4MSDA 1VQ2A 3EX8A 1VK9A 2G84A 1P6OA 3R2NA 2O3KA 1WKQA 2NX8A 3E1UA 1CTUA 4E0QA
chains in the Genus database with same CATH topology
4LD4A 2Z3IA 1TIYA 2HVWA 4NQLA 4K1RA 4OCNA 4OCLA 2D30A 1Z3AA 4ZD4A 4EG2A 1YSBA 2O96A 2W4LA 2G6VA 4D10F 2O95A 1UX1A 3B8FA 4O8YA 1OX7A 3RZUA 1UWZA 1UAQA 4O8YB 3DH1A 3ZPCA 4LC5A 4KITC 2OG4A 2ZNRA 4LCPA 2P87A 1ZABA 5DCAJ 2ZNVA 3MPZA 5M59B 4P9EA 4OWPA 2B3ZA 1AF2A 4P9CA 3OCQA 2D5NA 4MS7A 4LCOA 4OCNB 2NYTA 4OCLB 1WWRA 4O8XA 4OCMA 2A8NA 2Z3GA 2B3JA 4OCMB 2OBCA 2HVVA 4F7OA 2Z3HA 4MSQA 4ZFTA 2O7PA 1OI0A 1ALNA 4QFTA 3ZPGA 4WIGA 5C2OA 4P9DA 4BGDC 1RB7A 2Z3JA 4OWPB 2KKSA 2FR5A 2PW9A 2HXVA 1WN6A 1JTKA 3RZVA 2RPZA 1MQ0A 2FR6A 1CTTA 4G3MA 2QLCA 4LCNA 4O8XB 3G8QA 5CW6A 1R5XA 5GAOA 3DMOA 4ZFRA 4HRQA 2P8RA 4ILGC 5M52C 4WIFA 1R5TA 1YSDA 3IJFX 3SBGA 4LD2A 4I43B 3OJ6A 4MSJA 4JXEA 1WN5A 4ZD5A 4PQTA 4HRWA 4MSMA 2KCQA 1UX0A 4F3WA 3ZEFB 4MSDA 1VQ2A 3EX8A 2G84A 1P6OA 3R2NA 2O3KA 1WKQA 2NX8A 3E1UA 1CTUA 4E0QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LD4 A;  2Z3I A;  1TIY A;  2HVW A;  4NQL A;  4K1R A;  4OCN A;  4OCL A;  2D30 A;  1Z3A A;  4ZD4 A;  4EG2 A;  1YSB A;  2O96 A;  2W4L A;  2G6V A;  4D10 F;  2O95 A;  1UX1 A;  3B8F A;  4O8Y A;  1OX7 A;  3RZU A;  1UWZ A;  1UAQ A;  4O8Y B;  3DH1 A;  3ZPC A;  4LC5 A;  4KIT C;  2OG4 A;  2ZNR A;  4LCP A;  2P87 A;  1ZAB A;  5DCA J;  2ZNV A;  3MPZ A;  5M59 B;  4P9E A;  4OWP A;  2B3Z A;  1AF2 A;  4P9C A;  3OCQ A;  2D5N A;  4MS7 A;  4LCO A;  4OCN B;  2NYT A;  4OCL B;  1WWR A;  4O8X A;  4OCM A;  2A8N A;  2Z3G A;  2B3J A;  4OCM B;  2OBC A;  2HVV A;  4F7O A;  2Z3H A;  4MSQ A;  4ZFT A;  2O7P A;  1OI0 A;  1ALN A;  4QFT A;  3ZPG A;  4WIG A;  5C2O A;  4P9D A;  4BGD C;  1RB7 A;  2Z3J A;  4OWP B;  2KKS A;  2FR5 A;  2PW9 A;  2HXV A;  1WN6 A;  1JTK A;  3RZV A;  2RPZ A;  1MQ0 A;  2FR6 A;  1CTT A;  4G3M A;  2QLC A;  4LCN A;  4O8X B;  3G8Q A;  5CW6 A;  1R5X A;  5GAO A;  3DMO A;  4ZFR A;  4HRQ A;  2P8R A;  4ILG C;  5M52 C;  4WIF A;  1R5T A;  1YSD A;  3IJF X;  3SBG A;  4LD2 A;  4I43 B;  3OJ6 A;  4MSJ A;  4JXE A;  1WN5 A;  4ZD5 A;  4PQT A;  4HRW A;  4MSM A;  2KCQ A;  1UX0 A;  4F3W A;  3ZEF B;  4MSD A;  1VQ2 A;  3EX8 A;  2G84 A;  1P6O A;  3R2N A;  2O3K A;  1WKQ A;  2NX8 A;  3E1U A;  1CTU A;  4E0Q A; 
#chains in the Genus database with same CATH topology
 4LD4 A;  2Z3I A;  1TIY A;  1THZ A;  2HVW A;  4NQL A;  4K1R A;  4OCN A;  4OCL A;  2D30 A;  1Z3A A;  4ZD4 A;  4EG2 A;  1YSB A;  2O96 A;  1P4R A;  2W4L A;  2G6V A;  4D10 F;  3ZZM A;  2O95 A;  4EHI A;  1UX1 A;  3B8F A;  1PL0 A;  4O8Y A;  1OX7 A;  3RZU A;  1UWZ A;  1UAQ A;  4O8Y B;  3DH1 A;  3ZPC A;  4LC5 A;  1M9N A;  4KIT C;  2OG4 A;  2ZNR A;  4LCP A;  2P87 A;  1ZAB A;  1PKX A;  5DCA J;  2ZNV A;  3MPZ A;  5M59 B;  4J6E A;  4P9E A;  4OWP A;  2B3Z A;  1AF2 A;  2IU3 A;  4P9C A;  3OCQ A;  2D5N A;  4MS7 A;  4A1O A;  4LCO A;  4OCN B;  2NYT A;  4OCL B;  1WWR A;  4O8X A;  4OCM A;  2A8N A;  2Z3G A;  2B3J A;  4OCM B;  2OBC A;  2HVV A;  4F7O A;  2Z3H A;  4MSQ A;  4ZFT A;  2B1G A;  2O7P A;  1OI0 A;  1ALN A;  4QFT A;  3ZPG A;  4WIG A;  5C2O A;  4P9D A;  4BGD C;  1RB7 A;  2Z3J A;  4GGM X;  4OWP B;  2KKS A;  2IU0 A;  2FR5 A;  2PW9 A;  2HXV A;  1WN6 A;  1JTK A;  3RZV A;  3VX8 A;  1OZ0 A;  1MQ0 A;  2FR6 A;  2RPZ A;  1CTT A;  4G3M A;  2QLC A;  4LCN A;  4O8X B;  3G8Q A;  1ZCZ A;  5CW6 A;  1R5X A;  5GAO A;  3DMO A;  4ZFR A;  4HRQ A;  2P8R A;  2B1I A;  4ILG C;  5M52 C;  4WIF A;  1R5T A;  1YSD A;  1G8M A;  3IJF X;  3SBG A;  4LD2 A;  4I43 B;  3OJ6 A;  4MSJ A;  4JXE A;  1WN5 A;  3BH1 A;  4ZD5 A;  4PQT A;  4HRW A;  4MSM A;  2KCQ A;  1UX0 A;  4F3W A;  3ZEF B;  4MSD A;  1VQ2 A;  3EX8 A;  1VK9 A;  2G84 A;  1P6O A;  3R2N A;  2O3K A;  1WKQ A;  2NX8 A;  3E1U A;  1CTU A;  4E0Q A; 
#chains in the Genus database with same CATH homology
 4LD4 A;  2Z3I A;  1TIY A;  2HVW A;  4NQL A;  4K1R A;  4OCN A;  4OCL A;  2D30 A;  1Z3A A;  4ZD4 A;  4EG2 A;  1YSB A;  2O96 A;  2W4L A;  2G6V A;  4D10 F;  2O95 A;  1UX1 A;  3B8F A;  4O8Y A;  1OX7 A;  3RZU A;  1UWZ A;  1UAQ A;  4O8Y B;  3DH1 A;  3ZPC A;  4LC5 A;  4KIT C;  2OG4 A;  2ZNR A;  4LCP A;  2P87 A;  1ZAB A;  5DCA J;  2ZNV A;  3MPZ A;  5M59 B;  4P9E A;  4OWP A;  2B3Z A;  1AF2 A;  4P9C A;  3OCQ A;  2D5N A;  4MS7 A;  4LCO A;  4OCN B;  2NYT A;  4OCL B;  1WWR A;  4O8X A;  4OCM A;  2A8N A;  2Z3G A;  2B3J A;  4OCM B;  2OBC A;  2HVV A;  4F7O A;  2Z3H A;  4MSQ A;  4ZFT A;  2O7P A;  1OI0 A;  1ALN A;  4QFT A;  3ZPG A;  4WIG A;  5C2O A;  4P9D A;  4BGD C;  1RB7 A;  2Z3J A;  4OWP B;  2KKS A;  2FR5 A;  2PW9 A;  2HXV A;  1WN6 A;  1JTK A;  3RZV A;  2RPZ A;  1MQ0 A;  2FR6 A;  1CTT A;  4G3M A;  2QLC A;  4LCN A;  4O8X B;  3G8Q A;  5CW6 A;  1R5X A;  5GAO A;  3DMO A;  4ZFR A;  4HRQ A;  2P8R A;  4ILG C;  5M52 C;  4WIF A;  1R5T A;  1YSD A;  3IJF X;  3SBG A;  4LD2 A;  4I43 B;  3OJ6 A;  4MSJ A;  4JXE A;  1WN5 A;  4ZD5 A;  4PQT A;  4HRW A;  4MSM A;  2KCQ A;  1UX0 A;  4F3W A;  3ZEF B;  4MSD A;  1VQ2 A;  3EX8 A;  2G84 A;  1P6O A;  3R2N A;  2O3K A;  1WKQ A;  2NX8 A;  3E1U A;  1CTU A;  4E0Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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