1R61A

The structure of predicted metal-dependent hydrolase from bacillus stearothermophilus
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
205
structure length
205
Chain Sequence
AAMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of potential metal-dependent hydrolase with cyclase activity
rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase
molecule keywords metal-dependent hydrolase
total genus 59
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 1r61A00
3KRVA 4CZ1A 2B0AA 4COBA 1R61A 4J0NA 4COGA 4CO9A 4M8DA
chains in the Genus database with same CATH superfamily
1J3LA 3I74A 4MI1A 3S9MA 5ELYA 2CIJA 4OC4A 2JBJA 3EZBA 4TJXA 2EZCA 4COBA 4P4EA 4CO9A 4NGQA 1JDEA 4NGNA 5K99A 4W9YA 1CX8A 1KC7A 1CE8B 2C6GA 5F1YA 3ICUA 2OOTA 1T36B 2EK8A 4NGPA 3TLAA 2EZAA 2C6CA 1M6VB 3EZEA 4M8DA 2XEFA 4C8TA 2HROA 1EZAA 3D7FA 2OLSA 1EZBA 3FEDA 5IR2A 3SJFA 4P44A 2EK9A 3U1BA 3EIFA 4E5SA 1KBLA 4JZ0A 4OC5A 4C99A 1VBGA 4C9UA 4MCSA 2XEJA 3S9LA 3KRVA 4C8PA 2MP0A 4P4FA 4IIYA 1XF1A 1ZL0A 2C6PA 2YJTA 5F09A 1Y9ZA 3BHXA 3D7DA 3TLZA 2PVWA 3EZAA 3VTAA 1DIKA 2XEIA 3TLGA 1C3OB 4C8FA 4NGMA 4JVOA 3RBUA 4CZ1A 3TLGB 4X3RA 3SJGA 3T0TA 3T07A 2DIKA 2XEGA 2AUNA 5JVLA 4C85A 3T5MA 4P4DA 4OC2A 2E28A 2EZBA 3TLCA 3T05A 2PCNA 2YJVA 3C8OA 3NOJA 4E94A 4MCQA 4COGA 4P45A 4H1HA 4C9AA 1JDBC 2R82A 1ZYMA 4TWEA 2D0OA 3KASA 4C86A 5JYBA 4MCPA 4C9RA 3G23A 4LQGA 2C5QA 3SR3A 4YN3A 4J0NA 1A9XB 3S9NA 4MCRA 4C9EA 3TYXA 2B0AA 4OC1A 5IB9A 1ZRSA 3FF3A 3D7HA 1GGOA 3SJXA 4NGSA 2X0SA 1DE4C 2HWGA 1Q5XA 4CDJA 4IIXA 3FECA 2OR4A 3SJEA 4P4IA 1C30B 2HI6A 4C8UA 4C8CA 1NBWA 3I6SA 3TLBA 3BXMA 4JYWA 4P4JA 2D0PA 1VBHA 1VI4A 4KNGE 3TLYA 4OMEA 1R61A 2GP4A 2FM4A 3K4IA 3D7GA 3K9TA 4OC0A 1BXRB 2JBKA 1V6CA 3GJZA 3FEEA 4C8AA 4OC3A 1KEEB 1WVMA 3BI1A 3IWWA 5D29A 5FD8A 5F9MA 1CS0B 4C84A 4P4BA 4NGRA 3IIBA 5F5XA 1NXJA 1Z8LA 4INJA 4MJXA 4EYSA 4NGTA 4CDKA 3BI0A 2PVVA 4C9VA 3TLEA 2AUMA 4TJVA
chains in the Genus database with same CATH topology
3KRVA 4CZ1A 2B0AA 4COBA 1R61A 4J0NA 4COGA 4CO9A 4M8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KRV A;  4CZ1 A;  2B0A A;  4COB A;  1R61 A;  4J0N A;  4COG A;  4CO9 A;  4M8D A; 
#chains in the Genus database with same CATH topology
 1J3L A;  3I74 A;  4MI1 A;  3S9M A;  5ELY A;  2CIJ A;  4OC4 A;  2JBJ A;  3EZB A;  4TJX A;  2EZC A;  4COB A;  4P4E A;  4CO9 A;  4NGQ A;  1JDE A;  4NGN A;  5K99 A;  4W9Y A;  1CX8 A;  1KC7 A;  1CE8 B;  2C6G A;  5F1Y A;  3ICU A;  2OOT A;  1T36 B;  2EK8 A;  4NGP A;  3TLA A;  2EZA A;  2C6C A;  1M6V B;  3EZE A;  4M8D A;  2XEF A;  4C8T A;  2HRO A;  1EZA A;  3D7F A;  2OLS A;  1EZB A;  3FED A;  5IR2 A;  3SJF A;  4P44 A;  2EK9 A;  3U1B A;  3EIF A;  4E5S A;  1KBL A;  4JZ0 A;  4OC5 A;  4C99 A;  1VBG A;  4C9U A;  4MCS A;  2XEJ A;  3S9L A;  3KRV A;  4C8P A;  2MP0 A;  4P4F A;  4IIY A;  1XF1 A;  1ZL0 A;  2C6P A;  2YJT A;  5F09 A;  1Y9Z A;  3BHX A;  3D7D A;  3TLZ A;  2PVW A;  3EZA A;  3VTA A;  1DIK A;  2XEI A;  3TLG A;  1C3O B;  4C8F A;  4NGM A;  4JVO A;  3RBU A;  4CZ1 A;  3TLG B;  4X3R A;  3SJG A;  3T0T A;  3T07 A;  2DIK A;  2XEG A;  2AUN A;  5JVL A;  4C85 A;  3T5M A;  4P4D A;  4OC2 A;  2E28 A;  2EZB A;  3TLC A;  3T05 A;  2PCN A;  2YJV A;  3C8O A;  3NOJ A;  4E94 A;  4MCQ A;  4COG A;  4P45 A;  4H1H A;  4C9A A;  1JDB C;  2R82 A;  1ZYM A;  4TWE A;  2D0O A;  3KAS A;  4C86 A;  5JYB A;  4MCP A;  4C9R A;  3G23 A;  4LQG A;  2C5Q A;  3SR3 A;  4YN3 A;  4J0N A;  1A9X B;  3S9N A;  4MCR A;  4C9E A;  3TYX A;  2B0A A;  4OC1 A;  5IB9 A;  1ZRS A;  3FF3 A;  3D7H A;  1GGO A;  3SJX A;  4NGS A;  2X0S A;  1DE4 C;  2HWG A;  1Q5X A;  4CDJ A;  4IIX A;  3FEC A;  2OR4 A;  3SJE A;  4P4I A;  1C30 B;  2HI6 A;  4C8U A;  4C8C A;  1NBW A;  3I6S A;  3TLB A;  3BXM A;  4JYW A;  4P4J A;  2D0P A;  1VBH A;  1VI4 A;  4KNG E;  3TLY A;  4OME A;  1R61 A;  2GP4 A;  2FM4 A;  3K4I A;  3D7G A;  3K9T A;  4OC0 A;  1BXR B;  2JBK A;  1V6C A;  3GJZ A;  3FEE A;  4C8A A;  4OC3 A;  1KEE B;  1WVM A;  3BI1 A;  3IWW A;  5D29 A;  5FD8 A;  5F9M A;  1CS0 B;  4C84 A;  4P4B A;  4NGR A;  3IIB A;  5F5X A;  1NXJ A;  1Z8L A;  4INJ A;  4MJX A;  4EYS A;  4NGT A;  4CDK A;  3BI0 A;  2PVV A;  4C9V A;  3TLE A;  2AUM A;  4TJV A; 
#chains in the Genus database with same CATH homology
 3KRV A;  4CZ1 A;  2B0A A;  4COB A;  1R61 A;  4J0N A;  4COG A;  4CO9 A;  4M8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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