1R61A

The structure of predicted metal-dependent hydrolase from bacillus stearothermophilus
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
205
structure length
205
Chain Sequence
AAMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords metal-dependent hydrolase
publication title The structure of potential metal-dependent hydrolase with cyclase activity
rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase
total genus 59
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 1r61A00
4CZ1A 3KRVA 2B0AA 1R61A 4J0NA 4M8DA 4COGA 4COBA 4CO9A
chains in the Genus database with same CATH superfamily
4JVOA 4OC3A 1M6VB 2OLSA 1GGOA 3T0TA 3TYXA 2YJTA 3BI1A 1CE8B 4P4FA 4CO9A 1BXRB 2D0PA 2EK8A 3FF3A 1ZRSA 3S9MA 2FM4A 4P4BA 2C6CA 2EZAA 1VBGA 4NGPA 4C8PA 3VTAA 3T07A 4NGNA 4MCSA 4W9YA 2JBKA 4P4DA 2CIJA 2HI6A 2XEJA 3BI0A 1VI4A 2EZCA 4H1HA 5FD8A 3EZEA 4MCPA 1JDEA 4C99A 3SJGA 2PVVA 5IR2A 4C8TA 2HWGA 1NBWA 4E94A 2PCNA 3I6SA 3ICUA 5D29A 4LQGA 3KASA 1NXJA 3EZAA 1CX8A 5F9MA 3TLBA 3D7DA 2XEFA 1KBLA 4MCRA 3G23A 1Z8LA 2X0SA 3S9NA 1KC7A 3SJXA 3TLEA 4JYWA 3TLYA 1EZBA 3BHXA 2EK9A 5IB9A 1KEEB 1C3OB 4C84A 4P4IA 2MP0A 2PVWA 2C6PA 4C9AA 3FEEA 4C8FA 4P4JA 4IIXA 3TLGA 3SJFA 2R82A 2OOTA 4NGSA 3U1BA 3K9TA 4C9EA 1A9XB 4OMEA 2DIKA 4OC2A 4NGQA 3SJEA 2GP4A 3TLAA 3IIBA 4EYSA 2AUMA 1DE4C 1R61A 1V6CA 3NOJA 5F1YA 4COBA 3IWWA 1DIKA 4INJA 4JZ0A 1EZAA 2EZBA 4C8UA 2XEIA 1CS0B 3EZBA 1J3LA 4C86A 4OC5A 3TLCA 3C8OA 5JYBA 4NGMA 4P45A 4C9RA 2B0AA 3EIFA 3K4IA 5K99A 3S9LA 4OC4A 1C30B 4COGA 4IIYA 4TWEA 4C9UA 4C8CA 2AUNA 4C85A 5F5XA 4NGTA 4MCQA 4TJXA 4OC1A 3FECA 3T05A 1XF1A 3GJZA 4E5SA 3D7FA 3I74A 2E28A 5F09A 4TJVA 4MJXA 2YJVA 4X3RA 4CDKA 2D0OA 5JVLA 1Q5XA 1Y9ZA 4MI1A 3T5MA 2HROA 3TLZA 3RBUA 4CZ1A 1JDBC 3SR3A 1ZL0A 4C9VA 2OR4A 2XEGA 4NGRA 4P44A 4KNGE 1WVMA 4P4EA 2C5QA 2C6GA 4YN3A 3D7HA 3FEDA 3KRVA 4C8AA 3D7GA 4CDJA 4J0NA 4M8DA 5ELYA 1T36B 1ZYMA 3TLGB 3BXMA 4OC0A 1VBHA 2JBJA
chains in the Genus database with same CATH topology
4CZ1A 3KRVA 2B0AA 1R61A 4J0NA 4M8DA 4COGA 4COBA 4CO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CZ1 A;  3KRV A;  2B0A A;  1R61 A;  4J0N A;  4M8D A;  4COG A;  4COB A;  4CO9 A; 
#chains in the Genus database with same CATH topology
 4JVO A;  4OC3 A;  1M6V B;  2OLS A;  1GGO A;  3T0T A;  3TYX A;  2YJT A;  3BI1 A;  1CE8 B;  4P4F A;  4CO9 A;  1BXR B;  2D0P A;  2EK8 A;  3FF3 A;  1ZRS A;  3S9M A;  2FM4 A;  4P4B A;  2C6C A;  2EZA A;  1VBG A;  4NGP A;  4C8P A;  3VTA A;  3T07 A;  4NGN A;  4MCS A;  4W9Y A;  2JBK A;  4P4D A;  2CIJ A;  2HI6 A;  2XEJ A;  3BI0 A;  1VI4 A;  2EZC A;  4H1H A;  5FD8 A;  3EZE A;  4MCP A;  1JDE A;  4C99 A;  3SJG A;  2PVV A;  5IR2 A;  4C8T A;  2HWG A;  1NBW A;  4E94 A;  2PCN A;  3I6S A;  3ICU A;  5D29 A;  4LQG A;  3KAS A;  1NXJ A;  3EZA A;  1CX8 A;  5F9M A;  3TLB A;  3D7D A;  2XEF A;  1KBL A;  4MCR A;  3G23 A;  1Z8L A;  2X0S A;  3S9N A;  1KC7 A;  3SJX A;  3TLE A;  4JYW A;  3TLY A;  1EZB A;  3BHX A;  2EK9 A;  5IB9 A;  1KEE B;  1C3O B;  4C84 A;  4P4I A;  2MP0 A;  2PVW A;  2C6P A;  4C9A A;  3FEE A;  4C8F A;  4P4J A;  4IIX A;  3TLG A;  3SJF A;  2R82 A;  2OOT A;  4NGS A;  3U1B A;  3K9T A;  4C9E A;  1A9X B;  4OME A;  2DIK A;  4OC2 A;  4NGQ A;  3SJE A;  2GP4 A;  3TLA A;  3IIB A;  4EYS A;  2AUM A;  1DE4 C;  1R61 A;  1V6C A;  3NOJ A;  5F1Y A;  4COB A;  3IWW A;  1DIK A;  4INJ A;  4JZ0 A;  1EZA A;  2EZB A;  4C8U A;  2XEI A;  1CS0 B;  3EZB A;  1J3L A;  4C86 A;  4OC5 A;  3TLC A;  3C8O A;  5JYB A;  4NGM A;  4P45 A;  4C9R A;  2B0A A;  3EIF A;  3K4I A;  5K99 A;  3S9L A;  4OC4 A;  1C30 B;  4COG A;  4IIY A;  4TWE A;  4C9U A;  4C8C A;  2AUN A;  4C85 A;  5F5X A;  4NGT A;  4MCQ A;  4TJX A;  4OC1 A;  3FEC A;  3T05 A;  1XF1 A;  3GJZ A;  4E5S A;  3D7F A;  3I74 A;  2E28 A;  5F09 A;  4TJV A;  4MJX A;  2YJV A;  4X3R A;  4CDK A;  2D0O A;  5JVL A;  1Q5X A;  1Y9Z A;  4MI1 A;  3T5M A;  2HRO A;  3TLZ A;  3RBU A;  4CZ1 A;  1JDB C;  3SR3 A;  1ZL0 A;  4C9V A;  2OR4 A;  2XEG A;  4NGR A;  4P44 A;  4KNG E;  1WVM A;  4P4E A;  2C5Q A;  2C6G A;  4YN3 A;  3D7H A;  3FED A;  3KRV A;  4C8A A;  3D7G A;  4CDJ A;  4J0N A;  4M8D A;  5ELY A;  1T36 B;  1ZYM A;  3TLG B;  3BXM A;  4OC0 A;  1VBH A;  2JBJ A; 
#chains in the Genus database with same CATH homology
 4CZ1 A;  3KRV A;  2B0A A;  1R61 A;  4J0N A;  4M8D A;  4COG A;  4COB A;  4CO9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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