1R61A

The structure of predicted metal-dependent hydrolase from bacillus stearothermophilus
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
205
structure length
205
Chain Sequence
b'AAMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords metal-dependent hydrolase
publication title The structure of potential metal-dependent hydrolase with cyclase activity
rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase
total genus 59
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 1r61A00
4J0NA 4CZ1A 2B0AA 4COGA 4COBA 1R61A 4M8DA 3KRVA 4CO9A
chains in the Genus database with same CATH superfamily
4CZ1A 4P44A 2C5QA 2XEFA 4X3RA 2MP0A 2XEIA 5JVLA 4JZ0A 4C8AA 4TWEA 3U1BA 1Q5XA 3T05A 1ZRSA 2GP4A 4C8TA 4NGMA 1ZL0A 4OC2A 4IIYA 1GGOA 2JBKA 1M6VB 2E28A 3T0TA 2YJVA 4MCQA 3TLYA 1C3OB 5F9MA 2HROA 3RBUA 4NGRA 4C99A 2PCNA 4KNGE 5F5XA 3GJZA 4NGTA 3FEDA 2D0PA 3ICUA 3D7GA 1Y9ZA 3SJEA 4C8FA 2OR4A 3S9LA 4MCPA 4NGNA 2X0SA 4OC1A 1BXRB 3IIBA 4E5SA 4CDKA 3T07A 1V6CA 5IR2A 1CX8A 3C8OA 2EZCA 4TJXA 4OMEA 2YJTA 3SR3A 2DIKA 2CIJA 4NGQA 3KRVA 4INJA 1DE4C 4P4FA 5F09A 1KBLA 2AUMA 3I74A 1VI4A 4YN3A 4P4IA 2HI6A 3TLGA 1KC7A 1J3LA 2EK8A 3TLEA 4C84A 4C86A 4OC5A 3TLBA 3FEEA 3TYXA 3IWWA 1CE8B 1VBHA 4IIXA 2D0OA 1JDEA 1R61A 4P45A 3FF3A 3KASA 4C85A 1ZYMA 1Z8LA 1JDBC 1EZBA 4TJVA 3VTAA 4COGA 3EIFA 2C6GA 2EZAA 3NOJA 3BXMA 4EYSA 4MCSA 3K4IA 4M8DA 3D7FA 4C8UA 3BHXA 2R82A 3D7HA 3T5MA 5F1YA 3SJFA 3G23A 2OLSA 4OC3A 5D29A 4C9EA 4P4EA 4C9AA 4P4DA 3SJGA 3I6SA 4C9UA 1DIKA 1CS0B 4LQGA 3TLGB 2PVWA 1WVMA 3BI1A 5ELYA 1KEEB 4P4BA 3TLZA 2XEJA 1A9XB 3TLCA 3FECA 4E94A 5JYBA 1C30B 4MI1A 3EZBA 4OC4A 4J0NA 1NXJA 3BI0A 4NGPA 4P4JA 4MJXA 4C8PA 2EZBA 2HWGA 1EZAA 2XEGA 3EZAA 2B0AA 4H1HA 3S9MA 1VBGA 1T36B 5K99A 3S9NA 3SJXA 2AUNA 4CDJA 4OC0A 5IB9A 4C9VA 3EZEA 4JYWA 4C8CA 4MCRA 1XF1A 2PVVA 4JVOA 4C9RA 1NBWA 4W9YA 2C6PA 2OOTA 2C6CA 3K9TA 2EK9A 3TLAA 4COBA 2JBJA 5FD8A 2FM4A 3D7DA 4NGSA 4CO9A
chains in the Genus database with same CATH topology
4J0NA 4CZ1A 2B0AA 4COGA 4COBA 1R61A 4M8DA 3KRVA 4CO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J0N A;  4CZ1 A;  2B0A A;  4COG A;  4COB A;  1R61 A;  4M8D A;  3KRV A;  4CO9 A; 
#chains in the Genus database with same CATH topology
 4CZ1 A;  4P44 A;  2C5Q A;  2XEF A;  4X3R A;  2MP0 A;  2XEI A;  5JVL A;  4JZ0 A;  4C8A A;  4TWE A;  3U1B A;  1Q5X A;  3T05 A;  1ZRS A;  2GP4 A;  4C8T A;  4NGM A;  1ZL0 A;  4OC2 A;  4IIY A;  1GGO A;  2JBK A;  1M6V B;  2E28 A;  3T0T A;  2YJV A;  4MCQ A;  3TLY A;  1C3O B;  5F9M A;  2HRO A;  3RBU A;  4NGR A;  4C99 A;  2PCN A;  4KNG E;  5F5X A;  3GJZ A;  4NGT A;  3FED A;  2D0P A;  3ICU A;  3D7G A;  1Y9Z A;  3SJE A;  4C8F A;  2OR4 A;  3S9L A;  4MCP A;  4NGN A;  2X0S A;  4OC1 A;  1BXR B;  3IIB A;  4E5S A;  4CDK A;  3T07 A;  1V6C A;  5IR2 A;  1CX8 A;  3C8O A;  2EZC A;  4TJX A;  4OME A;  2YJT A;  3SR3 A;  2DIK A;  2CIJ A;  4NGQ A;  3KRV A;  4INJ A;  1DE4 C;  4P4F A;  5F09 A;  1KBL A;  2AUM A;  3I74 A;  1VI4 A;  4YN3 A;  4P4I A;  2HI6 A;  3TLG A;  1KC7 A;  1J3L A;  2EK8 A;  3TLE A;  4C84 A;  4C86 A;  4OC5 A;  3TLB A;  3FEE A;  3TYX A;  3IWW A;  1CE8 B;  1VBH A;  4IIX A;  2D0O A;  1JDE A;  1R61 A;  4P45 A;  3FF3 A;  3KAS A;  4C85 A;  1ZYM A;  1Z8L A;  1JDB C;  1EZB A;  4TJV A;  3VTA A;  4COG A;  3EIF A;  2C6G A;  2EZA A;  3NOJ A;  3BXM A;  4EYS A;  4MCS A;  3K4I A;  4M8D A;  3D7F A;  4C8U A;  3BHX A;  2R82 A;  3D7H A;  3T5M A;  5F1Y A;  3SJF A;  3G23 A;  2OLS A;  4OC3 A;  5D29 A;  4C9E A;  4P4E A;  4C9A A;  4P4D A;  3SJG A;  3I6S A;  4C9U A;  1DIK A;  1CS0 B;  4LQG A;  3TLG B;  2PVW A;  1WVM A;  3BI1 A;  5ELY A;  1KEE B;  4P4B A;  3TLZ A;  2XEJ A;  1A9X B;  3TLC A;  3FEC A;  4E94 A;  5JYB A;  1C30 B;  4MI1 A;  3EZB A;  4OC4 A;  4J0N A;  1NXJ A;  3BI0 A;  4NGP A;  4P4J A;  4MJX A;  4C8P A;  2EZB A;  2HWG A;  1EZA A;  2XEG A;  3EZA A;  2B0A A;  4H1H A;  3S9M A;  1VBG A;  1T36 B;  5K99 A;  3S9N A;  3SJX A;  2AUN A;  4CDJ A;  4OC0 A;  5IB9 A;  4C9V A;  3EZE A;  4JYW A;  4C8C A;  4MCR A;  1XF1 A;  2PVV A;  4JVO A;  4C9R A;  1NBW A;  4W9Y A;  2C6P A;  2OOT A;  2C6C A;  3K9T A;  2EK9 A;  3TLA A;  4COB A;  2JBJ A;  5FD8 A;  2FM4 A;  3D7D A;  4NGS A;  4CO9 A; 
#chains in the Genus database with same CATH homology
 4J0N A;  4CZ1 A;  2B0A A;  4COG A;  4COB A;  1R61 A;  4M8D A;  3KRV A;  4CO9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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