1R61A

The structure of predicted metal-dependent hydrolase from bacillus stearothermophilus
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
205
structure length
205
Chain Sequence
AAMKVYDVTAPIYEGMPVYKNKPEKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDALGIERAQEGHPTHKTLFSAGVIIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLFDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of potential metal-dependent hydrolase with cyclase activity
rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase
molecule keywords metal-dependent hydrolase
total genus 59
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04199 Cyclase Putative cyclase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.50 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Putative cyclase 1r61A00
4COGA 3KRVA 4M8DA 4CO9A 4J0NA 4COBA 1R61A 2B0AA 4CZ1A
chains in the Genus database with same CATH superfamily
1Y9ZA 4MCRA 4C99A 2MP0A 1Z8LA 5JYBA 2GP4A 4OC4A 1R61A 3T0TA 3S9LA 5F9MA 3D7DA 3SJGA 3RBUA 2C6GA 1T36B 2C6CA 4W9YA 2EK8A 4X3RA 1CE8B 5F5XA 1KBLA 3T07A 3FEEA 2CIJA 3D7HA 1CS0B 4TJXA 3TLCA 4NGPA 2AUNA 3EIFA 3FF3A 3G23A 4C9RA 4P44A 3BI1A 2D0PA 4NGRA 2D0OA 5ELYA 4M8DA 2C6PA 3TLGB 4OC3A 3I6SA 3K9TA 4CDKA 1C30B 4TWEA 1VBHA 1M6VB 4P4DA 4CO9A 4TJVA 3NOJA 3SR3A 1NXJA 4NGTA 2FM4A 3FEDA 3I74A 4OC0A 4MI1A 4JYWA 3IWWA 4C8TA 1NBWA 4COBA 3BHXA 4P45A 5D29A 2EZBA 3SJEA 2XEFA 1A9XB 4MCPA 4NGQA 3T05A 3FECA 1KC7A 4C8CA 3S9MA 2JBKA 1C3OB 4C8AA 3EZAA 4IIXA 2XEIA 5JVLA 4J0NA 3TLAA 2B0AA 3IIBA 2EZCA 4P4JA 4COGA 1Q5XA 2OLSA 4OC5A 4C86A 3C8OA 4C9VA 3TLYA 4P4FA 1V6CA 2XEGA 3SJFA 2AUMA 3EZBA 4P4EA 2HWGA 1JDBC 2E28A 4MCSA 4YN3A 3TLZA 5K99A 4E5SA 4C9UA 3SJXA 3ICUA 3TLBA 5IR2A 1ZL0A 1ZRSA 2EZAA 4C8PA 4C9AA 1J3LA 4IIYA 2HI6A 3D7FA 4CDJA 4CZ1A 4P4BA 4MJXA 3BXMA 2R82A 3BI0A 1VBGA 3EZEA 5FD8A 4E94A 2YJTA 2EK9A 1WVMA 3D7GA 3U1BA 4OMEA 2C5QA 1EZBA 2PVVA 4C8UA 5F09A 4EYSA 4C9EA 1DE4C 4LQGA 1BXRB 3KASA 5F1YA 2JBJA 4KNGE 1CX8A 2PCNA 5IB9A 4NGMA 2DIKA 4C85A 3TYXA 1JDEA 1DIKA 3K4IA 4MCQA 4NGSA 4P4IA 3KRVA 2OOTA 3TLEA 3TLGA 4JVOA 1VI4A 1EZAA 3S9NA 4OC2A 2X0SA 4JZ0A 4C8FA 2HROA 2YJVA 3GJZA 4NGNA 4C84A 1ZYMA 3T5MA 4H1HA 3VTAA 1GGOA 1XF1A 1KEEB 4INJA 2OR4A 2XEJA 2PVWA 4OC1A
chains in the Genus database with same CATH topology
4COGA 3KRVA 4M8DA 4CO9A 4J0NA 4COBA 1R61A 2B0AA 4CZ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4COG A;  3KRV A;  4M8D A;  4CO9 A;  4J0N A;  4COB A;  1R61 A;  2B0A A;  4CZ1 A; 
#chains in the Genus database with same CATH topology
 1Y9Z A;  4MCR A;  4C99 A;  2MP0 A;  1Z8L A;  5JYB A;  2GP4 A;  4OC4 A;  1R61 A;  3T0T A;  3S9L A;  5F9M A;  3D7D A;  3SJG A;  3RBU A;  2C6G A;  1T36 B;  2C6C A;  4W9Y A;  2EK8 A;  4X3R A;  1CE8 B;  5F5X A;  1KBL A;  3T07 A;  3FEE A;  2CIJ A;  3D7H A;  1CS0 B;  4TJX A;  3TLC A;  4NGP A;  2AUN A;  3EIF A;  3FF3 A;  3G23 A;  4C9R A;  4P44 A;  3BI1 A;  2D0P A;  4NGR A;  2D0O A;  5ELY A;  4M8D A;  2C6P A;  3TLG B;  4OC3 A;  3I6S A;  3K9T A;  4CDK A;  1C30 B;  4TWE A;  1VBH A;  1M6V B;  4P4D A;  4CO9 A;  4TJV A;  3NOJ A;  3SR3 A;  1NXJ A;  4NGT A;  2FM4 A;  3FED A;  3I74 A;  4OC0 A;  4MI1 A;  4JYW A;  3IWW A;  4C8T A;  1NBW A;  4COB A;  3BHX A;  4P45 A;  5D29 A;  2EZB A;  3SJE A;  2XEF A;  1A9X B;  4MCP A;  4NGQ A;  3T05 A;  3FEC A;  1KC7 A;  4C8C A;  3S9M A;  2JBK A;  1C3O B;  4C8A A;  3EZA A;  4IIX A;  2XEI A;  5JVL A;  4J0N A;  3TLA A;  2B0A A;  3IIB A;  2EZC A;  4P4J A;  4COG A;  1Q5X A;  2OLS A;  4OC5 A;  4C86 A;  3C8O A;  4C9V A;  3TLY A;  4P4F A;  1V6C A;  2XEG A;  3SJF A;  2AUM A;  3EZB A;  4P4E A;  2HWG A;  1JDB C;  2E28 A;  4MCS A;  4YN3 A;  3TLZ A;  5K99 A;  4E5S A;  4C9U A;  3SJX A;  3ICU A;  3TLB A;  5IR2 A;  1ZL0 A;  1ZRS A;  2EZA A;  4C8P A;  4C9A A;  1J3L A;  4IIY A;  2HI6 A;  3D7F A;  4CDJ A;  4CZ1 A;  4P4B A;  4MJX A;  3BXM A;  2R82 A;  3BI0 A;  1VBG A;  3EZE A;  5FD8 A;  4E94 A;  2YJT A;  2EK9 A;  1WVM A;  3D7G A;  3U1B A;  4OME A;  2C5Q A;  1EZB A;  2PVV A;  4C8U A;  5F09 A;  4EYS A;  4C9E A;  1DE4 C;  4LQG A;  1BXR B;  3KAS A;  5F1Y A;  2JBJ A;  4KNG E;  1CX8 A;  2PCN A;  5IB9 A;  4NGM A;  2DIK A;  4C85 A;  3TYX A;  1JDE A;  1DIK A;  3K4I A;  4MCQ A;  4NGS A;  4P4I A;  3KRV A;  2OOT A;  3TLE A;  3TLG A;  4JVO A;  1VI4 A;  1EZA A;  3S9N A;  4OC2 A;  2X0S A;  4JZ0 A;  4C8F A;  2HRO A;  2YJV A;  3GJZ A;  4NGN A;  4C84 A;  1ZYM A;  3T5M A;  4H1H A;  3VTA A;  1GGO A;  1XF1 A;  1KEE B;  4INJ A;  2OR4 A;  2XEJ A;  2PVW A;  4OC1 A; 
#chains in the Genus database with same CATH homology
 4COG A;  3KRV A;  4M8D A;  4CO9 A;  4J0N A;  4COB A;  1R61 A;  2B0A A;  4CZ1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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