1R6OC

Atp-dependent clp protease atp-binding subunit clpa/atp-dependent clp protease adaptor protein clps
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
100
structure length
94
Chain Sequence
WLDFDQLDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ATP-dependent Clp protease ATP-binding subunit clpA
publication title Crystallographic investigation of peptide binding sites in the N-domain of the ClpA chaperone
pubmed doi rcsb
source organism Escherichia coli
total genus 26
structure length 94
sequence length 100
chains with identical sequence D
ec nomenclature
pdb deposition date 2003-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1r6oC00
3GW1A 3O1FB 1CTFA 2WA8A 1R6OC 1RQSA 3G19A 1DD3A 1LZWA 1R6QC 3G3PA 4YKAA 2WA9A 1MBXC 1MBVB 4YJXA 1DD4A 1RQVA 1MBUC 1RQUA 3O2HA 3DNJA 3O2BA 3O2OA 3GQ1A 2W9RA 1MG9A 4YJMA 3GQ0A 3O1FA 3G1BA
chains in the Genus database with same CATH superfamily
1VQ5W 5CA3A 3G71W 3O1FB 5M1AA 5HL7W 4WFNW 1VQNW 5GAGa 3OW2V 5JVHW 4YKAA 1KC8X 1MBVB 2QEXW 1DD4A 4BL3A 3W7WA 3CMAW 1RQVA 3PIPW 3CCLW 1K8AX 3CCRW 2QA4W 2ZJPW 4CJNA 1N8RX 3CPWV 3CCVW 3O2OA 5DM7W 5DM6W 4IOAW 1JJ2V 3ZG0A 1BXYA 1YJNW 1M90X 4UY8Z 1VQPW 3GW1A 1QVGV 1YI2W 4IO9W 1KQSV 4WFAW 3CC4W 1CTFA 1VQQA 5M18A 4IOCW 5M19A 1K9MX 3G19A 1DD3A 1MWSA 1R6QC 1VQKW 3CCQW 1Q82X 3CD6W 1MWUA 4YJXA 3D3IA 1VQ6W 5GW7A 1MBUC 3O2HA 1VQMW 3O2BA 1MG9A 3GQ0A 1MWRA 3CC7W 1YJWW 1S72W 3CCSW 2ZJRW 3I55W 3W7TA 1M1KX 3PIOW 3ZFZA 3CF5W 1VQ7W 2WA8A 1R6OC 1RQSA 3G6EW 3J7ZZ 1LZWA 1VQ4W 4WF9W 4DKIA 1YIJW 1Q81X 3W7UA 1Q7YX 1VQ8W 1VQ9W 5GADa 1RQUA 1QVFV 2OTJW 3CCEW 1MWTA 5JVGW 3DNJA 3CCUW 3G4SW 1YITW 4WCEW 3CC2W 5GAHa 3W7SA 3ZG5A 1KD1X 4YJMA 3G1BA 1VQOW 3CCJW 1NJIX 1Q86X 4U67W 2ZJQW 4BL2A 1W2BV 1K73X 3G3PA 1YHQW 2WA9A 3CMEW 1MBXC 1YJ9W 3CCMW 1VQLW 5GAEa 4CPKA 2OTLW 3W7XA 3GQ1A 2W9RA 4WFBW 3I56W 3DLLW 3CXCV 3O1FA
chains in the Genus database with same CATH topology
3GW1A 3O1FB 1CTFA 2WA8A 1R6OC 1RQSA 3G19A 1DD3A 1LZWA 1R6QC 3G3PA 4YKAA 2WA9A 1MBXC 1MBVB 4YJXA 1DD4A 1RQVA 1MBUC 1RQUA 3O2HA 3DNJA 3O2BA 3O2OA 3GQ1A 2W9RA 1MG9A 4YJMA 3GQ0A 3O1FA 3G1BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GW1 A;  3O1F B;  1CTF A;  2WA8 A;  1R6O C;  1RQS A;  3G19 A;  1DD3 A;  1LZW A;  1R6Q C;  3G3P A;  4YKA A;  2WA9 A;  1MBX C;  1MBV B;  4YJX A;  1DD4 A;  1RQV A;  1MBU C;  1RQU A;  3O2H A;  3DNJ A;  3O2B A;  3O2O A;  3GQ1 A;  2W9R A;  1MG9 A;  4YJM A;  3GQ0 A;  3O1F A;  3G1B A; 
#chains in the Genus database with same CATH topology
 1VQ5 W;  5CA3 A;  3G71 W;  3O1F B;  5M1A A;  5HL7 W;  4WFN W;  1VQN W;  5GAG a;  3OW2 V;  5JVH W;  4YKA A;  1KC8 X;  1MBV B;  2QEX W;  1DD4 A;  4BL3 A;  3W7W A;  3CMA W;  1RQV A;  3PIP W;  3CCL W;  1K8A X;  3CCR W;  2QA4 W;  2ZJP W;  4CJN A;  1N8R X;  3CPW V;  3CCV W;  3O2O A;  5DM7 W;  5DM6 W;  4IOA W;  1JJ2 V;  3ZG0 A;  1BXY A;  1YJN W;  1M90 X;  4UY8 Z;  1VQP W;  3GW1 A;  1QVG V;  1YI2 W;  4IO9 W;  1KQS V;  4WFA W;  3CC4 W;  1CTF A;  1VQQ A;  5M18 A;  4IOC W;  5M19 A;  1K9M X;  3G19 A;  1DD3 A;  1MWS A;  1R6Q C;  1VQK W;  3CCQ W;  1Q82 X;  3CD6 W;  1MWU A;  4YJX A;  3D3I A;  1VQ6 W;  5GW7 A;  1MBU C;  3O2H A;  1VQM W;  3O2B A;  1MG9 A;  3GQ0 A;  1MWR A;  3CC7 W;  1YJW W;  1S72 W;  3CCS W;  2ZJR W;  3I55 W;  3W7T A;  1M1K X;  3PIO W;  3ZFZ A;  3CF5 W;  1VQ7 W;  2WA8 A;  1R6O C;  1RQS A;  3G6E W;  3J7Z Z;  1LZW A;  1VQ4 W;  4WF9 W;  4DKI A;  1YIJ W;  1Q81 X;  3W7U A;  1Q7Y X;  1VQ8 W;  1VQ9 W;  5GAD a;  1RQU A;  1QVF V;  2OTJ W;  3CCE W;  1MWT A;  5JVG W;  3DNJ A;  3CCU W;  3G4S W;  1YIT W;  4WCE W;  3CC2 W;  5GAH a;  3W7S A;  3ZG5 A;  1KD1 X;  4YJM A;  3G1B A;  1VQO W;  3CCJ W;  1NJI X;  1Q86 X;  4U67 W;  2ZJQ W;  4BL2 A;  1W2B V;  1K73 X;  3G3P A;  1YHQ W;  2WA9 A;  3CME W;  1MBX C;  1YJ9 W;  3CCM W;  1VQL W;  5GAE a;  4CPK A;  2OTL W;  3W7X A;  3GQ1 A;  2W9R A;  4WFB W;  3I56 W;  3DLL W;  3CXC V;  3O1F A; 
#chains in the Genus database with same CATH homology
 3GW1 A;  3O1F B;  1CTF A;  2WA8 A;  1R6O C;  1RQS A;  3G19 A;  1DD3 A;  1LZW A;  1R6Q C;  3G3P A;  4YKA A;  2WA9 A;  1MBX C;  1MBV B;  4YJX A;  1DD4 A;  1RQV A;  1MBU C;  1RQU A;  3O2H A;  3DNJ A;  3O2B A;  3O2O A;  3GQ1 A;  2W9R A;  1MG9 A;  4YJM A;  3GQ0 A;  3O1F A;  3G1B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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