1R6QA

Clpns with fragments
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
142
structure length
142
Chain Sequence
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone/protein binding
molecule keywords ATP-dependent Clp protease ATP-binding subunit clpA
publication title Crystallographic investigation of peptide binding sites in the N-domain of the ClpA chaperone.
pubmed doi rcsb
source organism Escherichia coli
total genus 56
structure length 142
sequence length 142
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 1r6qA00
4HH5A 3WDCA 1KHYA 1MBVA 1R6OA 4Y0CA 1MG9B 3WDEA 3WDBA 5GUIA 1QVRA 1R6CX 5HBNA 1MBXA 4IODA 1LZWB 1R6QA 3ZRIA 1R6BX 4P15A 1K6KA 4HH6A 2Y1RA 2Y1QA 1KSFX 3FESA 4IRFA 3WDDA 3FH2A 1MBUA 3PXGA 2K77A 4Y0BA 4UQWA 3ZRJA
chains in the Genus database with same CATH superfamily
4HH5A 3WDCA 1KHYA 1MBVA 1R6OA 4Y0CA 1MG9B 3WDEA 3WDBA 5GUIA 1QVRA 1R6CX 5HBNA 1MBXA 4IODA 1LZWB 1R6QA 3ZRIA 1R6BX 4P15A 1K6KA 4HH6A 2Y1RA 2Y1QA 1KSFX 3FESA 4IRFA 3WDDA 3FH2A 1MBUA 3PXGA 2K77A 4Y0BA 4UQWA 3ZRJA
chains in the Genus database with same CATH topology
4HH5A 3WDCA 1KHYA 1MBVA 1R6OA 4Y0CA 1MG9B 3WDEA 3WDBA 5GUIA 1QVRA 1R6CX 5HBNA 1MBXA 4IODA 1LZWB 1R6QA 3ZRIA 1R6BX 4P15A 1K6KA 4HH6A 2Y1RA 2Y1QA 1KSFX 3FESA 4IRFA 3WDDA 3FH2A 1MBUA 3PXGA 2K77A 4Y0BA 4UQWA 3ZRJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HH5 A;  3WDC A;  1KHY A;  1MBV A;  1R6O A;  4Y0C A;  1MG9 B;  3WDE A;  3WDB A;  5GUI A;  1QVR A;  1R6C X;  5HBN A;  1MBX A;  4IOD A;  1LZW B;  1R6Q A;  3ZRI A;  1R6B X;  4P15 A;  1K6K A;  4HH6 A;  2Y1R A;  2Y1Q A;  1KSF X;  3FES A;  4IRF A;  3WDD A;  3FH2 A;  1MBU A;  3PXG A;  2K77 A;  4Y0B A;  4UQW A;  3ZRJ A; 
#chains in the Genus database with same CATH topology
 4HH5 A;  3WDC A;  1KHY A;  1MBV A;  1R6O A;  4Y0C A;  1MG9 B;  3WDE A;  3WDB A;  5GUI A;  1QVR A;  1R6C X;  5HBN A;  1MBX A;  4IOD A;  1LZW B;  1R6Q A;  3ZRI A;  1R6B X;  4P15 A;  1K6K A;  4HH6 A;  2Y1R A;  2Y1Q A;  1KSF X;  3FES A;  4IRF A;  3WDD A;  3FH2 A;  1MBU A;  3PXG A;  2K77 A;  4Y0B A;  4UQW A;  3ZRJ A; 
#chains in the Genus database with same CATH homology
 4HH5 A;  3WDC A;  1KHY A;  1MBV A;  1R6O A;  4Y0C A;  1MG9 B;  3WDE A;  3WDB A;  5GUI A;  1QVR A;  1R6C X;  5HBN A;  1MBX A;  4IOD A;  1LZW B;  1R6Q A;  3ZRI A;  1R6B X;  4P15 A;  1K6K A;  4HH6 A;  2Y1R A;  2Y1Q A;  1KSF X;  3FES A;  4IRF A;  3WDD A;  3FH2 A;  1MBU A;  3PXG A;  2K77 A;  4Y0B A;  4UQW A;  3ZRJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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