1R8ME

Sec7 domain of the arf exchange factor arno with brefeldin a-sensitizing mutations
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
196
structure length
195
Chain Sequence
EANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Exchange factor
molecule keywords Arno
publication title Structural snapshots of the mechanism and inhibition of a guanine nucleotide exchange factor
pubmed doi rcsb
source organism Homo sapiens
total genus 71
structure length 195
sequence length 196
ec nomenclature
pdb deposition date 2003-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01369 Sec7 Sec7 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 1r8mE01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 1r8mE02
3L8NA 4JMOA 4JWLA 4C0AA 4L5MA 1RE0B 4D7QA 1R8SE 1BC9A 4OIYA 3LTLA 1R8QE 4JMIA 1XSZA 4A4PA 3SWVA 2R09A 1PBVA 4C7PA 4Z21A 4D7RA 1XT0B 2R0DA 1R8ME 1KU1A 1S9DE 4JXHA
chains in the Genus database with same CATH superfamily
4JWLA 1I4AA 1AOWA 4KN4X 2VXGA 1R8QE 3ABQA 1HM6A 1A8AA 2OY9A 1W7BA 2HYWA 3AJCA 1XT0B 3ABSA 2HSNA 2R0DA 3USYA 1HVGA 1AVCA 4EVHA 3L8NA 4JMOA 1ANXA 1ANWA 4EVFA 1RE0B 3TW5A 1C1KA 1XJLA 4KN7X 4D7QA 2ZOCA 2IICA 1ANNA 4OIYA 4MDVA 1YIIA 2XO3A 3HJLA 4X9PA 1G5NA 1HAKA 1N42A 2QEZA 2RANA 1N41A 4JMIA 1XSZA 1BCYA 4MDUA 4A4PA 3SWVA 1UPTB 4Q2SA 4KMUX 1BCZA 2IE7A 2H0LA 2IE6A 1S9DE 2K6XA 1Q8DA 2H0KA 2ZHJA 2ZHIA 4FHRB 4L5MA 1LKVX 1BC3A 1R8SE 1BC9A 3SOHB 1MCXA 2XO2A 3ABRA 1SAVA 3LTLA 2HYVA 1AEIA 3ABOA 2R09A 1PBVA 1W45A 1AVRA 1HVFA 1R4AE 1YCNA 1A8BA 1YJ0A 1DK5A 3USWA 1R8ME 1KU1A 2Q4CA 4FQ0C 4JXHA 1HVEA 1AVHA 4C0AA 1BC0A 1DM5A 2II2A 1AIIA 4JK1X 1W3WA 3AO0A 1ALAA 3ANYA 2H0MA 1AXNA 1BCWA 1BC1A 1HVDA 1M9IA 2HYUA 4C7PA 4Z21A 1QC7A 1BO9A 1N00A 4D7RA 1YGMA 3BRXA 1N44A 4HREA
chains in the Genus database with same CATH topology
3L8NA 4JMOA 4JWLA 4C0AA 4FHRB 4L5MA 1LKVX 1RE0B 4KN4X 3TW5A 4KN7X 4D7QA 1R8SE 1BC9A 4JK1X 4OIYA 3SOHB 3LTLA 3HJLA 1R8QE 4JMIA 1XSZA 4A4PA 3SWVA 2R09A 1PBVA 4C7PA 4Z21A 1QC7A 4D7RA 4KMUX 3AJCA 1XT0B 2HSNA 2R0DA 3USWA 1R8ME 3USYA 1KU1A 1S9DE 2K6XA 1Q8DA 4FQ0C 4JXHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L8N A;  4JMO A;  4JWL A;  4C0A A;  4L5M A;  1RE0 B;  4D7Q A;  1R8S E;  1BC9 A;  4OIY A;  3LTL A;  1R8Q E;  4JMI A;  1XSZ A;  4A4P A;  3SWV A;  2R09 A;  1PBV A;  4C7P A;  4Z21 A;  4D7R A;  1XT0 B;  2R0D A;  1R8M E;  1KU1 A;  1S9D E;  4JXH A; 
#chains in the Genus database with same CATH topology
 4JWL A;  1I4A A;  1AOW A;  4KN4 X;  2VXG A;  1R8Q E;  3ABQ A;  1HM6 A;  1A8A A;  2OY9 A;  1W7B A;  2HYW A;  3AJC A;  1XT0 B;  3ABS A;  2HSN A;  2R0D A;  3USY A;  1HVG A;  1AVC A;  4EVH A;  3L8N A;  4JMO A;  1ANX A;  1ANW A;  4EVF A;  1RE0 B;  3TW5 A;  1C1K A;  1XJL A;  4KN7 X;  4D7Q A;  2ZOC A;  2IIC A;  1ANN A;  4OIY A;  4MDV A;  1YII A;  2XO3 A;  3HJL A;  4X9P A;  1G5N A;  1HAK A;  1N42 A;  2QEZ A;  2RAN A;  1N41 A;  4JMI A;  1XSZ A;  1BCY A;  4MDU A;  4A4P A;  3SWV A;  1UPT B;  4Q2S A;  4KMU X;  1BCZ A;  2IE7 A;  2H0L A;  2IE6 A;  1S9D E;  2K6X A;  1Q8D A;  2H0K A;  2ZHJ A;  2ZHI A;  4FHR B;  4L5M A;  1LKV X;  1BC3 A;  1R8S E;  1BC9 A;  3SOH B;  1MCX A;  2XO2 A;  3ABR A;  1SAV A;  3LTL A;  2HYV A;  1AEI A;  3ABO A;  2R09 A;  1PBV A;  1W45 A;  1AVR A;  1HVF A;  1R4A E;  1YCN A;  1A8B A;  1YJ0 A;  1DK5 A;  3USW A;  1R8M E;  1KU1 A;  2Q4C A;  4FQ0 C;  4JXH A;  1HVE A;  1AVH A;  4C0A A;  1BC0 A;  1DM5 A;  2II2 A;  1AII A;  4JK1 X;  1W3W A;  3AO0 A;  1ALA A;  3ANY A;  2H0M A;  1AXN A;  1BCW A;  1BC1 A;  1HVD A;  1M9I A;  2HYU A;  4C7P A;  4Z21 A;  1QC7 A;  1BO9 A;  1N00 A;  4D7R A;  1YGM A;  3BRX A;  1N44 A;  4HRE A; 
#chains in the Genus database with same CATH homology
 3L8N A;  4JMO A;  4JWL A;  4C0A A;  4FHR B;  4L5M A;  1LKV X;  1RE0 B;  4KN4 X;  3TW5 A;  4KN7 X;  4D7Q A;  1R8S E;  1BC9 A;  4JK1 X;  4OIY A;  3SOH B;  3LTL A;  3HJL A;  1R8Q E;  4JMI A;  1XSZ A;  4A4P A;  3SWV A;  2R09 A;  1PBV A;  4C7P A;  4Z21 A;  1QC7 A;  4D7R A;  4KMU X;  3AJC A;  1XT0 B;  2HSN A;  2R0D A;  3USW A;  1R8M E;  3USY A;  1KU1 A;  1S9D E;  2K6X A;  1Q8D A;  4FQ0 C;  4JXH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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