1RB9A

Rubredoxin from desulfovibrio vulgaris refined anisotropically at 0.92 angstroms resolution
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
51
structure length
51
Chain Sequence
KKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Iron-sulfur protein
molecule keywords RUBREDOXIN
publication title Anisotropic Refinement of Rubredoxin from Desulfovibrio Vulgaris
rcsb
source organism Desulfovibrio vulgaris subsp. vulgaris str. hildenborough
total genus 8
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1997-12-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1rb9A00
1LTLA 1R0FA 1RWDA 5AI3A 1RYTA 2MS3A 3KYXA 1YK5A 1FHHA 3PZAA 1R0JA 5AI2A 1BRFA 1FHMA 3PWFA 1LKMA 2HR5A 4K9FA 2LCQA 1SMUA 1R0GA 3KYWA 1B13A 2DSXA 1SMMA 2KN9A 4POGA 2M4YA 1E8JA 1IROA 3QVDA 2QL0A 1CADA 3A44A 3KYVA 1NNQA 2PVEA 1R0IA 1VCXA 4AR6A 1QYBA 3SS2A 4POFA 6RXNA 3KYYA 1YV1A 2PVXA 1R0HA 1S30A 2K2DA 1B71A 2PYAA 3MPSA 1SMWA 1C09A 3RYGA 1YUZA 1S2ZA 3RZ6A 1RDGA 1IRNA 1ZRPA 3RZTA 4AR4A 1JYBA 4YWMA 1B2JA 2GMGA 1H7VA 1BQ8A 4RXNA 4AR3A 8RXNA 1RDVA 1LKOA 1BQ9A 1YK4A 2V3BB 2RDVA 7RXNA 5IY0A 1B2OA 2KKDA 4ME3A 1RB9A 1DVBA 1BE7A 1YUXA 1DX8A 1T9PA 1QCVA 1CAAA 3KYUA 4YWLA 1IU6A 1IU5A 4TPUA 4AR5A 1T9QA 1LKPA 1BFYA 5RXNA 2VL6A 1S24A 1T9OA
chains in the Genus database with same CATH superfamily
4Y52L 2NYDA 1WJVA 1RYTA 5MFZA 1P7PA 5IP9L 5GAHc 3HOWL 1FHHA 4A3ML 3PIP1 3PZAA 2A6HD 2BE5D 1LKMA 4K9FA 5C4XL 5EIOC 3S1RL 4AI1A 1R0GA 1PFVA 1B13A 4POGA 4A3FL 3H99A 1QQTA 2CKCA 1IROA 2A69D 3KYVA 2PVEA 1VCXA 2NVQL 2JI3A 3SS2A 6RXNA 1YV1A 5AN9H 5MF6A 3GTJL 1SMWA 3MPSA 4GS7D 2HVYC 2JA5L 2A6ED 3ZG6A 3RZ6A 1WCML 4JAGA 2O5JD 3GTPL 5M5XL 4AR4A 1JYBA 4YWMA 5JVH1 4RXNA 2R7ZL 4AHYA 8RXNA 1LKOA 1YK4A 1PFWA 4LHLA 2RDVA 5C44L 4ME3A 3HOXL 1RB9A 1DVBA 2JI2A 1CAAA 3B08B 4YWLA 4AYBP 1IU6A 4BY1L 2B63L 2XJQA 3P8BA 1I50L 3WWLA 3CQZL 5M5WL 3RZDL 3H0GL 3S2DL 4BY7L 1T9OA 1LTLA 2M6OA 4AHZA 1R0FA 4BBSL 3S17L 3IU3I 3GTGL 5C4JL 4A3LL 3P2AA 3VPBE 3MQKB 4C3IL 1R0JA 5AI2A 4X6AL 1BRFA 4XGHA 2JA7L 4V196 3HOYL 2E2IL 3LPEB 2DSXA 4TVMA 5EINC 5M3FL 3WWNB 2J9UB 1E8JA 3A44A 1CADA 1PFUA 3HOVL 4AR6A 1QYBA 3LWRB 3KYYA 4LHNA 4WFN1 2E2HL 5IYDL 1NXGA 2PVXA 3S1QL 1B71A 3RYGA 2Z3QB 3HOZL 1YUZA 1S2ZA 2XJSA 3M4OL 2XJUA 5DM61 1TWFL 3S16L 4QIWP 2CR8A 2NVTL 2L0ZA 3I4ML 2RFKB 2GMGA 3S2HL 4ZN1B 3LWVB 3PL5A 3GTKL 2XJRA 4UY81 3PIO1 2M6PA 4AHWA 1VZHA 3H97A 5IYBL 2PSMC 2KKDA 4U671 1K83L 3LNLA 1QCVA 2V0FA 4A3KL 2A68D 4TPUA 4JAEA 3H3VM 3FDJA 1BFYA 5IP7L 2E2JL 4AI2A 2ZIXA 3LWPB 2B5ID 5FJ8L 1I3QL 2PMZP 3S1ML 1PZXA 1OWBA 3H9CA 5MGNA 1TWCL 2C6AA 4A3IL 1FHMA 2PPTA 2Z3RB 2V0EA 2ERSA 2M4VA 4A3JL 1SMMA 2CKAA 2KN9A 2XJTA 1F4LA 3J7Y1 5C3EL 5FLML 3QVDA 1SFOL 2NVXL 1Z92B 3MSUA 1R0HA 3B0AB 2K2DA 2WB1P 5GAEc 3K35A 3I4NL 1VZIA 1RDGA 4A3BL 3HAXC 3S14L 3HJYB 3GTML 1H7VA 1BQ8A 4C3JL 2AYJA 4AR3A 3QQCE 5H1Sc 3LWQB 1Y1WL 3NFPI 4JAFA 3FKIL 1I6HL 5GADc 2V3BB 4AI3A 7RXNA 2R92L 1BE7A 4XXBB 1DX8A 1T9PA 3HOUL 3S1NL 2JA8L 4AR5A 1NXEA 2JI1A 2AQCA 1T9QA 3M3YL 2YU9L 4AHXA 5JVG1 3PKIA 4BBRL 1PFYA 3S15L 5RXNA 2VL6A 5DM71 4A3EL 5K2ME 1RWDA 5AI3A 5M5YL 5MLC3 2MS3A 3LWOB 1TWHL 2H12A 3H9BA 3GTOL 2NVYL 3KYXA 1YK5A 4B8CD 1VZGA 3J7Z1 1ODHA 3PWFA 3HJWB 3K7AL 4A93L 2HR5A 3PO2L 1TWAL 2LCQA 1SMUA 2AUSB 2APOB 4BXXL 1Y1VL 3KYWA 5M3ML 2XJVA 1OWCA 3PO3L 2M4YA 4JADA 4Y7NL 2QL0A 4E6YA 1R0IA 1NNQA 4POFA 3HKZP 2JA6L 4G6BA 1S30A 5IYCL 2PYAA 1C09A 2Y0SP 2ERJA 4A3DL 1IRNA 1ZRPA 3RZOL 3RZTA 4A3GL 1RYQA 3JR7A 2XJPA 1B2JA 3GTLL 2VUML 2EY4E 4C3HL 1RDVA 5MFPA 1BQ9A 4A3CL 4ZN3B 2WAQP 5IY0A 1B2OA 1YUXA 3KYUA 1R9TL 2R93L 1IU5A 4AI0A 1TWGL 3PKJA 1LKPA 2C6BA 5GAGc 1IW7D 4C2M1 1S24A 3GTQL
chains in the Genus database with same CATH topology
5K2ME 1LTLA 2M6OA 4AHZA 2NYDA 1R0FA 1RWDA 5AI3A 1WJVA 1RYTA 3IU3I 5MFZA 5MLC3 1OWBA 2MS3A 2H12A 5MGNA 5GAHc 3P2AA 3KYXA 3VPBE 1YK5A 4B8CD 1FHHA 1VZGA 3J7Z1 2C6AA 3PIP1 1ODHA 3PZAA 1R0JA 2A6HD 2BE5D 5AI2A 1BRFA 1FHMA 3PWFA 1LKMA 4XGHA 2HR5A 2PPTA 4K9FA 2Z3RB 5EIOC 2V0EA 4V196 2LCQA 1SMUA 2ERSA 4AI1A 1R0GA 2M4VA 3KYWA 3LPEB 1B13A 2DSXA 1SMMA 2XJVA 2CKAA 2KN9A 2XJTA 4TVMA 1OWCA 5EINC 4POGA 3WWNB 3J7Y1 2M4YA 4JADA 2CKCA 2J9UB 1E8JA 1IROA 2QL0A 1CADA 3A44A 2A69D 3QVDA 4E6YA 3KYVA 1NNQA 2PVEA 1R0IA 1VCXA 4AR6A 1QYBA 2JI3A 3SS2A 4POFA 6RXNA 1Z92B 3KYYA 4LHNA 4WFN1 1YV1A 4G6BA 3MSUA 1NXGA 2PVXA 3B0AB 1R0HA 1S30A 5AN9H 5MF6A 2K2DA 1B71A 2PYAA 5GAEc 1SMWA 3MPSA 4GS7D 1C09A 3RYGA 3K35A 2Z3QB 1YUZA 2A6ED 1S2ZA 3ZG6A 2XJSA 2ERJA 1VZIA 2XJUA 3RZ6A 5DM61 1RDGA 4JAGA 2O5JD 1IRNA 2CR8A 1ZRPA 2L0ZA 3RZTA 4AR4A 1RYQA 1JYBA 4YWMA 2XJPA 1B2JA 2GMGA 1H7VA 5JVH1 1BQ8A 4RXNA 4ZN1B 4AHYA 2AYJA 4AR3A 2XJRA 1RDVA 3QQCE 8RXNA 5H1Sc 1LKOA 5MFPA 1BQ9A 3PIO1 3NFPI 2M6PA 1YK4A 4JAFA 4UY81 4LHLA 5GADc 4AHWA 2RDVA 2V3BB 4AI3A 7RXNA 1VZHA 4ZN3B 5IY0A 1B2OA 2PSMC 2KKDA 4ME3A 1RB9A 1DVBA 4U671 1BE7A 1YUXA 2JI2A 4XXBB 1DX8A 1T9PA 3LNLA 1QCVA 2V0FA 1CAAA 3B08B 3KYUA 4YWLA 1IU6A 2A68D 1IU5A 2XJQA 3P8BA 4TPUA 4AR5A 1NXEA 2JI1A 4AI0A 1T9QA 3PKJA 4JAEA 3WWLA 1LKPA 4AHXA 2C6BA 5JVG1 3PKIA 5GAGc 1BFYA 1IW7D 5RXNA 2VL6A 5DM71 4AI2A 2ZIXA 2B5ID 1S24A 1T9OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LTL A;  1R0F A;  1RWD A;  5AI3 A;  1RYT A;  2MS3 A;  3KYX A;  1YK5 A;  1FHH A;  3PZA A;  1R0J A;  5AI2 A;  1BRF A;  1FHM A;  3PWF A;  1LKM A;  2HR5 A;  4K9F A;  2LCQ A;  1SMU A;  1R0G A;  3KYW A;  1B13 A;  2DSX A;  1SMM A;  2KN9 A;  4POG A;  2M4Y A;  1E8J A;  1IRO A;  3QVD A;  2QL0 A;  1CAD A;  3A44 A;  3KYV A;  1NNQ A;  2PVE A;  1R0I A;  1VCX A;  4AR6 A;  1QYB A;  3SS2 A;  4POF A;  6RXN A;  3KYY A;  1YV1 A;  2PVX A;  1R0H A;  1S30 A;  2K2D A;  1B71 A;  2PYA A;  3MPS A;  1SMW A;  1C09 A;  3RYG A;  1YUZ A;  1S2Z A;  3RZ6 A;  1RDG A;  1IRN A;  1ZRP A;  3RZT A;  4AR4 A;  1JYB A;  4YWM A;  1B2J A;  2GMG A;  1H7V A;  1BQ8 A;  4RXN A;  4AR3 A;  8RXN A;  1RDV A;  1LKO A;  1BQ9 A;  1YK4 A;  2V3B B;  2RDV A;  7RXN A;  5IY0 A;  1B2O A;  2KKD A;  4ME3 A;  1RB9 A;  1DVB A;  1BE7 A;  1YUX A;  1DX8 A;  1T9P A;  1QCV A;  1CAA A;  3KYU A;  4YWL A;  1IU6 A;  1IU5 A;  4TPU A;  4AR5 A;  1T9Q A;  1LKP A;  1BFY A;  5RXN A;  2VL6 A;  1S24 A;  1T9O A; 
#chains in the Genus database with same CATH topology
 4Y52 L;  2NYD A;  1WJV A;  1RYT A;  5MFZ A;  1P7P A;  5IP9 L;  5GAH c;  3HOW L;  1FHH A;  4A3M L;  3PIP 1;  3PZA A;  2A6H D;  2BE5 D;  1LKM A;  4K9F A;  5C4X L;  5EIO C;  3S1R L;  4AI1 A;  1R0G A;  1PFV A;  1B13 A;  4POG A;  4A3F L;  3H99 A;  1QQT A;  2CKC A;  1IRO A;  2A69 D;  3KYV A;  2PVE A;  1VCX A;  2NVQ L;  2JI3 A;  3SS2 A;  6RXN A;  1YV1 A;  5AN9 H;  5MF6 A;  3GTJ L;  1SMW A;  3MPS A;  4GS7 D;  2HVY C;  2JA5 L;  2A6E D;  3ZG6 A;  3RZ6 A;  1WCM L;  4JAG A;  2O5J D;  3GTP L;  5M5X L;  4AR4 A;  1JYB A;  4YWM A;  5JVH 1;  4RXN A;  2R7Z L;  4AHY A;  8RXN A;  1LKO A;  1YK4 A;  1PFW A;  4LHL A;  2RDV A;  5C44 L;  4ME3 A;  3HOX L;  1RB9 A;  1DVB A;  2JI2 A;  1CAA A;  3B08 B;  4YWL A;  4AYB P;  1IU6 A;  4BY1 L;  2B63 L;  2XJQ A;  3P8B A;  1I50 L;  3WWL A;  3CQZ L;  5M5W L;  3RZD L;  3H0G L;  3S2D L;  4BY7 L;  1T9O A;  1LTL A;  2M6O A;  4AHZ A;  1R0F A;  4BBS L;  3S17 L;  3IU3 I;  3GTG L;  5C4J L;  4A3L L;  3P2A A;  3VPB E;  3MQK B;  4C3I L;  1R0J A;  5AI2 A;  4X6A L;  1BRF A;  4XGH A;  2JA7 L;  4V19 6;  3HOY L;  2E2I L;  3LPE B;  2DSX A;  4TVM A;  5EIN C;  5M3F L;  3WWN B;  2J9U B;  1E8J A;  3A44 A;  1CAD A;  1PFU A;  3HOV L;  4AR6 A;  1QYB A;  3LWR B;  3KYY A;  4LHN A;  4WFN 1;  2E2H L;  5IYD L;  1NXG A;  2PVX A;  3S1Q L;  1B71 A;  3RYG A;  2Z3Q B;  3HOZ L;  1YUZ A;  1S2Z A;  2XJS A;  3M4O L;  2XJU A;  5DM6 1;  1TWF L;  3S16 L;  4QIW P;  2CR8 A;  2NVT L;  2L0Z A;  3I4M L;  2RFK B;  2GMG A;  3S2H L;  4ZN1 B;  3LWV B;  3PL5 A;  3GTK L;  2XJR A;  4UY8 1;  3PIO 1;  2M6P A;  4AHW A;  1VZH A;  3H97 A;  5IYB L;  2PSM C;  2KKD A;  4U67 1;  1K83 L;  3LNL A;  1QCV A;  2V0F A;  4A3K L;  2A68 D;  4TPU A;  4JAE A;  3H3V M;  3FDJ A;  1BFY A;  5IP7 L;  2E2J L;  4AI2 A;  2ZIX A;  3LWP B;  2B5I D;  5FJ8 L;  1I3Q L;  2PMZ P;  3S1M L;  1PZX A;  1OWB A;  3H9C A;  5MGN A;  1TWC L;  2C6A A;  4A3I L;  1FHM A;  2PPT A;  2Z3R B;  2V0E A;  2ERS A;  2M4V A;  4A3J L;  1SMM A;  2CKA A;  2KN9 A;  2XJT A;  1F4L A;  3J7Y 1;  5C3E L;  5FLM L;  3QVD A;  1SFO L;  2NVX L;  1Z92 B;  3MSU A;  1R0H A;  3B0A B;  2K2D A;  2WB1 P;  5GAE c;  3K35 A;  3I4N L;  1VZI A;  1RDG A;  4A3B L;  3HAX C;  3S14 L;  3HJY B;  3GTM L;  1H7V A;  1BQ8 A;  4C3J L;  2AYJ A;  4AR3 A;  3QQC E;  5H1S c;  3LWQ B;  1Y1W L;  3NFP I;  4JAF A;  3FKI L;  1I6H L;  5GAD c;  2V3B B;  4AI3 A;  7RXN A;  2R92 L;  1BE7 A;  4XXB B;  1DX8 A;  1T9P A;  3HOU L;  3S1N L;  2JA8 L;  4AR5 A;  1NXE A;  2JI1 A;  2AQC A;  1T9Q A;  3M3Y L;  2YU9 L;  4AHX A;  5JVG 1;  3PKI A;  4BBR L;  1PFY A;  3S15 L;  5RXN A;  2VL6 A;  5DM7 1;  4A3E L;  5K2M E;  1RWD A;  5AI3 A;  5M5Y L;  5MLC 3;  2MS3 A;  3LWO B;  1TWH L;  2H12 A;  3H9B A;  3GTO L;  2NVY L;  3KYX A;  1YK5 A;  4B8C D;  1VZG A;  3J7Z 1;  1ODH A;  3PWF A;  3HJW B;  3K7A L;  4A93 L;  2HR5 A;  3PO2 L;  1TWA L;  2LCQ A;  1SMU A;  2AUS B;  2APO B;  4BXX L;  1Y1V L;  3KYW A;  5M3M L;  2XJV A;  1OWC A;  3PO3 L;  2M4Y A;  4JAD A;  4Y7N L;  2QL0 A;  4E6Y A;  1R0I A;  1NNQ A;  4POF A;  3HKZ P;  2JA6 L;  4G6B A;  1S30 A;  5IYC L;  2PYA A;  1C09 A;  2Y0S P;  2ERJ A;  4A3D L;  1IRN A;  1ZRP A;  3RZO L;  3RZT A;  4A3G L;  1RYQ A;  3JR7 A;  2XJP A;  1B2J A;  3GTL L;  2VUM L;  2EY4 E;  4C3H L;  1RDV A;  5MFP A;  1BQ9 A;  4A3C L;  4ZN3 B;  2WAQ P;  5IY0 A;  1B2O A;  1YUX A;  3KYU A;  1R9T L;  2R93 L;  1IU5 A;  4AI0 A;  1TWG L;  3PKJ A;  1LKP A;  2C6B A;  5GAG c;  1IW7 D;  4C2M 1;  1S24 A;  3GTQ L; 
#chains in the Genus database with same CATH homology
 5K2M E;  1LTL A;  2M6O A;  4AHZ A;  2NYD A;  1R0F A;  1RWD A;  5AI3 A;  1WJV A;  1RYT A;  3IU3 I;  5MFZ A;  5MLC 3;  1OWB A;  2MS3 A;  2H12 A;  5MGN A;  5GAH c;  3P2A A;  3KYX A;  3VPB E;  1YK5 A;  4B8C D;  1FHH A;  1VZG A;  3J7Z 1;  2C6A A;  3PIP 1;  1ODH A;  3PZA A;  1R0J A;  2A6H D;  2BE5 D;  5AI2 A;  1BRF A;  1FHM A;  3PWF A;  1LKM A;  4XGH A;  2HR5 A;  2PPT A;  4K9F A;  2Z3R B;  5EIO C;  2V0E A;  4V19 6;  2LCQ A;  1SMU A;  2ERS A;  4AI1 A;  1R0G A;  2M4V A;  3KYW A;  3LPE B;  1B13 A;  2DSX A;  1SMM A;  2XJV A;  2CKA A;  2KN9 A;  2XJT A;  4TVM A;  1OWC A;  5EIN C;  4POG A;  3WWN B;  3J7Y 1;  2M4Y A;  4JAD A;  2CKC A;  2J9U B;  1E8J A;  1IRO A;  2QL0 A;  1CAD A;  3A44 A;  2A69 D;  3QVD A;  4E6Y A;  3KYV A;  1NNQ A;  2PVE A;  1R0I A;  1VCX A;  4AR6 A;  1QYB A;  2JI3 A;  3SS2 A;  4POF A;  6RXN A;  1Z92 B;  3KYY A;  4LHN A;  4WFN 1;  1YV1 A;  4G6B A;  3MSU A;  1NXG A;  2PVX A;  3B0A B;  1R0H A;  1S30 A;  5AN9 H;  5MF6 A;  2K2D A;  1B71 A;  2PYA A;  5GAE c;  1SMW A;  3MPS A;  4GS7 D;  1C09 A;  3RYG A;  3K35 A;  2Z3Q B;  1YUZ A;  2A6E D;  1S2Z A;  3ZG6 A;  2XJS A;  2ERJ A;  1VZI A;  2XJU A;  3RZ6 A;  5DM6 1;  1RDG A;  4JAG A;  2O5J D;  1IRN A;  2CR8 A;  1ZRP A;  2L0Z A;  3RZT A;  4AR4 A;  1RYQ A;  1JYB A;  4YWM A;  2XJP A;  1B2J A;  2GMG A;  1H7V A;  5JVH 1;  1BQ8 A;  4RXN A;  4ZN1 B;  4AHY A;  2AYJ A;  4AR3 A;  2XJR A;  1RDV A;  3QQC E;  8RXN A;  5H1S c;  1LKO A;  5MFP A;  1BQ9 A;  3PIO 1;  3NFP I;  2M6P A;  1YK4 A;  4JAF A;  4UY8 1;  4LHL A;  5GAD c;  4AHW A;  2RDV A;  2V3B B;  4AI3 A;  7RXN A;  1VZH A;  4ZN3 B;  5IY0 A;  1B2O A;  2PSM C;  2KKD A;  4ME3 A;  1RB9 A;  1DVB A;  4U67 1;  1BE7 A;  1YUX A;  2JI2 A;  4XXB B;  1DX8 A;  1T9P A;  3LNL A;  1QCV A;  2V0F A;  1CAA A;  3B08 B;  3KYU A;  4YWL A;  1IU6 A;  2A68 D;  1IU5 A;  2XJQ A;  3P8B A;  4TPU A;  4AR5 A;  1NXE A;  2JI1 A;  4AI0 A;  1T9Q A;  3PKJ A;  4JAE A;  3WWL A;  1LKP A;  4AHX A;  2C6B A;  5JVG 1;  3PKI A;  5GAG c;  1BFY A;  1IW7 D;  5RXN A;  2VL6 A;  5DM7 1;  4AI2 A;  2ZIX A;  2B5I D;  1S24 A;  1T9O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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