1RB9A

Rubredoxin from desulfovibrio vulgaris refined anisotropically at 0.92 angstroms resolution
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
51
structure length
51
Chain Sequence
KKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Iron-sulfur protein
source organism Desulfovibrio vulgaris subsp. vulgaris str. hildenborough
publication title Anisotropic Refinement of Rubredoxin from Desulfovibrio Vulgaris
rcsb
molecule keywords RUBREDOXIN
total genus 8
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 1997-12-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1rb9A00
4AR5A 2V3BB 1BQ9A 3PZAA 1VCXA 1T9OA 1YK5A 4K9FA 4AR6A 1BQ8A 1ZRPA 3KYYA 1R0HA 4POFA 1YUXA 8RXNA 1YK4A 2PYAA 3KYXA 2LCQA 5AI2A 1B13A 1R0JA 2HR5A 1IU5A 4RXNA 6RXNA 1C09A 1S2ZA 3KYVA 2KKDA 1IROA 2GMGA 1YUZA 1R0IA 1S24A 2QL0A 1IU6A 2K2DA 1LKMA 1SMMA 1YV1A 1B71A 1BFYA 1FHHA 5AI3A 2PVEA 1T9QA 1LKOA 3MPSA 3RZ6A 2VL6A 1FHMA 2MS3A 1SMWA 4POGA 1DVBA 4AR3A 3RYGA 4YWMA 1LTLA 1IRNA 3KYWA 7RXNA 5IY0A 1BRFA 5RXNA 1CAAA 2M4YA 4AR4A 1B2OA 3KYUA 1R0GA 4YWLA 1RWDA 1NNQA 2PVXA 3RZTA 1RYTA 1BE7A 1E8JA 1R0FA 1RDGA 4ME3A 3A44A 1JYBA 1LKPA 1H7VA 1DX8A 1QCVA 4TPUA 1CADA 2KN9A 3SS2A 3PWFA 1RB9A 3QVDA 1B2JA 1QYBA 1S30A 1T9PA 2RDVA 1RDVA 1SMUA 2DSXA
chains in the Genus database with same CATH superfamily
4AYBP 4A3BL 3PZAA 4C3HL 3PKIA 1YK5A 4AR6A 1IW7D 3PIP1 2JI2A 4QIWP 1ZRPA 1R0HA 1YUXA 2C6AA 2PMZP 3HOYL 8RXNA 4BXXL 1OWCA 2JA5L 5FJ8L 3S15L 3RZDL 3WWNB 1TWGL 1VZGA 2Y0SP 4BBSL 3B0AB 2AQCA 5GAEc 5MF6A 2V0FA 1IROA 1R9TL 1YUZA 2A6HD 3IU3I 2K2DA 3GTGL 4B8CD 2Z3QB 4E6YA 1YV1A 1WJVA 2PVEA 1T9QA 4XXBB 4WFN1 3H3VM 1FHMA 2XJRA 2PPTA 4POGA 3HOWL 4AI0A 4YWMA 3PL5A 2CKAA 3PO2L 2EY4E 5IYCL 1BRFA 3MQKB 3QQCE 2M4YA 2XJVA 3LWOB 1I3QL 3FKIL 4AHZA 2R92L 5DM71 3PO3L 1PFVA 2JI3A 4A3GL 1LKPA 5M5WL 4GS7D 5MFPA 2M6OA 5AN9H 4U671 3H9CA 2RDVA 4X6AL 5C44L 4UY81 3HOXL 1OWBA 3HOVL 5IP7L 2DSXA 2ERJA 1BQ9A 5DM61 3S2HL 1T9OA 4A3IL 4K9FA 3H0GL 2B5ID 4A3JL 4POFA 3S1QL 2PYAA 3KYXA 2LCQA 1RYQA 4AHXA 2E2JL 4V196 1F4LA 2HR5A 4RXNA 1S2ZA 2KKDA 4JAEA 1R0IA 4LHLA 2J9UB 3I4NL 1BFYA 5MFZA 3CQZL 2B63L 4TVMA 1LKOA 4AI1A 3RZ6A 3J7Y1 1TWCL 4ZN1B 1TWAL 2RFKB 4AR3A 5GADc 2CKCA 3S1ML 2A6ED 1P7PA 4A3EL 7RXNA 4Y52L 4XGHA 5RXNA 4AR4A 2APOB 1ODHA 2PVXA 1PFUA 3RZTA 3RZOL 3LNLA 5EIOC 2ERSA 1R0FA 2R93L 3LWPB 1H7VA 2L0ZA 1DX8A 4C3JL 2AYJA 5IP9L 3K7AL 2R7ZL 2KN9A 4A93L 4AHYA 1I6HL 3QVDA 1QYBA 1T9PA 2WB1P 5C4XL 3K35A 4LHNA 3LPEB 4A3CL 2O5JD 1QQTA 3S14L 1VCXA 2XJTA 1BQ8A 3KYYA 5IYDL 3GTJL 3GTML 3M4OL 4JAFA 5M5YL 1B13A 3I4ML 1VZIA 2M4VA 2E2IL 1R0JA 2XJPA 6RXNA 1C09A 3LWVB 4ZN3B 3J7Z1 2GMGA 4A3FL 3GTOL 1S24A 3P8BA 1IU6A 1Y1VL 2XJSA 3MSUA 5FLML 5K2ME 1LKMA 4BY7L 1SMMA 1FHHA 5AI3A 5IYBL 1TWFL 4A3LL 3MPSA 5M3ML 2MS3A 1SMWA 5M3FL 1DVBA 2BE5D 2XJQA 3S1NL 2NVYL 2NVTL 3KYWA 5IY0A 3ZG6A 1VZHA 1B2OA 4C2M1 3GTLL 4YWLA 1RWDA 3HKZP 1NNQA 2JI1A 5MGNA 3B08B 2JA8L 1RDGA 4ME3A 1NXGA 1JYBA 3A44A 2A69D 3S17L 2A68D 3GTPL 2ZIXA 3SS2A 3S2DL 1RB9A 1K83L 3GTQL 3S16L 1S30A 4JADA 5M5XL 1PFYA 3VPBE 1SMUA 2XJUA 3HJYB 1TWHL 4AR5A 2V3BB 5JVG1 2PSMC 1I50L 4Y7NL 5GAHc 1YK4A 4AI2A 3HJWB 5AI2A 2YU9L 5C3EL 3PIO1 4A3KL 2NYDA 3M3YL 2E2HL 1IU5A 2Z3RB 5JVH1 2H12A 2NVXL 3KYVA 3LWRB 5GAGc 4C3IL 2QL0A 2C6BA 3S1RL 1B71A 3FDJA 1Y1WL 1PZXA 5MLC3 4G6BA 2VL6A 2NVQL 4A3ML 5EINC 3WWLA 3JR7A 2CR8A 2HVYC 2VUML 3RYGA 3HAXC 5C4JL 2JA6L 3H9BA 3PKJA 2JA7L 4A3DL 1LTLA 1IRNA 2WAQP 3H99A 3LWQB 1WCML 1CAAA 3KYUA 1R0GA 4BBRL 5H1Sc 3P2AA 4AHWA 4BY1L 1RYTA 1BE7A 1E8JA 2M6PA 3H97A 1QCVA 1PFWA 4TPUA 3HOZL 4AI3A 1CADA 1NXEA 1Z92B 1SFOL 2AUSB 3PWFA 1B2JA 3NFPI 3GTKL 2V0EA 1RDVA 3HOUL 4JAGA
chains in the Genus database with same CATH topology
4AR5A 2V3BB 5JVG1 1BQ9A 3PZAA 5DM61 1VCXA 3PKIA 1T9OA 1YK5A 2XJTA 4K9FA 1IW7D 4AR6A 1BQ8A 3PIP1 2JI2A 2PSMC 1ZRPA 3KYYA 2B5ID 1R0HA 4POFA 1YUXA 2C6AA 8RXNA 1OWCA 1YK4A 4JAFA 2PYAA 3KYXA 4AI2A 5GAHc 2LCQA 5AI2A 1B13A 1VZIA 3WWNB 1RYQA 1VZGA 2M4VA 4AHXA 3PIO1 1R0JA 4V196 2NYDA 2HR5A 3B0AB 2XJPA 1IU5A 4RXNA 6RXNA 2Z3RB 5GAEc 5MF6A 1C09A 5JVH1 1S2ZA 4ZN3B 2H12A 3KYVA 2KKDA 2V0FA 1IROA 4JAEA 3J7Z1 2GMGA 1YUZA 5GAGc 1R0IA 4LHLA 1S24A 2A6HD 3P8BA 3IU3I 2QL0A 1IU6A 2J9UB 2C6BA 2K2DA 2XJSA 3MSUA 4B8CD 5K2ME 1LKMA 2Z3QB 1SMMA 4E6YA 1YV1A 1B71A 1BFYA 1FHHA 1WJVA 5AI3A 5MFZA 2PVEA 1T9QA 4TVMA 1LKOA 4XXBB 3MPSA 4AI1A 4WFN1 3RZ6A 5MLC3 3J7Y1 4G6BA 2VL6A 1FHMA 5EINC 2MS3A 2XJRA 3WWLA 2CR8A 2PPTA 1SMWA 4POGA 4ZN1B 1DVBA 4AI0A 2BE5D 4AR3A 3RYGA 4YWMA 2O5JD 2CKAA 5GADc 2XJQA 2CKCA 2A6ED 3PKJA 1LTLA 1IRNA 3KYWA 7RXNA 5IY0A 1BRFA 4XGHA 3QQCE 3ZG6A 5RXNA 1CAAA 2M4YA 1VZHA 1B2OA 2XJVA 4AR4A 3KYUA 1R0GA 4YWLA 1ODHA 4AHZA 1RWDA 5H1Sc 5DM71 3P2AA 4AHWA 1NNQA 2JI1A 2PVXA 5MGNA 3RZTA 3B08B 2JI3A 3LNLA 1RYTA 1BE7A 5EIOC 1E8JA 2ERSA 2M6PA 1R0FA 1RDGA 4ME3A 1NXGA 1JYBA 1LKPA 3A44A 1H7VA 2L0ZA 2A69D 1DX8A 4GS7D 1QCVA 4TPUA 5MFPA 2AYJA 4AI3A 2A68D 1CADA 1NXEA 1Z92B 2M6OA 2ZIXA 2KN9A 3SS2A 4AHYA 3PWFA 1RB9A 3QVDA 5AN9H 1B2JA 3NFPI 1QYBA 4U671 1S30A 1T9PA 4JADA 2RDVA 2V0EA 1RDVA 4UY81 3VPBE 3K35A 4LHNA 1OWBA 1SMUA 2XJUA 3LPEB 4JAGA 2DSXA 2ERJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AR5 A;  2V3B B;  1BQ9 A;  3PZA A;  1VCX A;  1T9O A;  1YK5 A;  4K9F A;  4AR6 A;  1BQ8 A;  1ZRP A;  3KYY A;  1R0H A;  4POF A;  1YUX A;  8RXN A;  1YK4 A;  2PYA A;  3KYX A;  2LCQ A;  5AI2 A;  1B13 A;  1R0J A;  2HR5 A;  1IU5 A;  4RXN A;  6RXN A;  1C09 A;  1S2Z A;  3KYV A;  2KKD A;  1IRO A;  2GMG A;  1YUZ A;  1R0I A;  1S24 A;  2QL0 A;  1IU6 A;  2K2D A;  1LKM A;  1SMM A;  1YV1 A;  1B71 A;  1BFY A;  1FHH A;  5AI3 A;  2PVE A;  1T9Q A;  1LKO A;  3MPS A;  3RZ6 A;  2VL6 A;  1FHM A;  2MS3 A;  1SMW A;  4POG A;  1DVB A;  4AR3 A;  3RYG A;  4YWM A;  1LTL A;  1IRN A;  3KYW A;  7RXN A;  5IY0 A;  1BRF A;  5RXN A;  1CAA A;  2M4Y A;  4AR4 A;  1B2O A;  3KYU A;  1R0G A;  4YWL A;  1RWD A;  1NNQ A;  2PVX A;  3RZT A;  1RYT A;  1BE7 A;  1E8J A;  1R0F A;  1RDG A;  4ME3 A;  3A44 A;  1JYB A;  1LKP A;  1H7V A;  1DX8 A;  1QCV A;  4TPU A;  1CAD A;  2KN9 A;  3SS2 A;  3PWF A;  1RB9 A;  3QVD A;  1B2J A;  1QYB A;  1S30 A;  1T9P A;  2RDV A;  1RDV A;  1SMU A;  2DSX A; 
#chains in the Genus database with same CATH topology
 4AYB P;  4A3B L;  3PZA A;  4C3H L;  3PKI A;  1YK5 A;  4AR6 A;  1IW7 D;  3PIP 1;  2JI2 A;  4QIW P;  1ZRP A;  1R0H A;  1YUX A;  2C6A A;  2PMZ P;  3HOY L;  8RXN A;  4BXX L;  1OWC A;  2JA5 L;  5FJ8 L;  3S15 L;  3RZD L;  3WWN B;  1TWG L;  1VZG A;  2Y0S P;  4BBS L;  3B0A B;  2AQC A;  5GAE c;  5MF6 A;  2V0F A;  1IRO A;  1R9T L;  1YUZ A;  2A6H D;  3IU3 I;  2K2D A;  3GTG L;  4B8C D;  2Z3Q B;  4E6Y A;  1YV1 A;  1WJV A;  2PVE A;  1T9Q A;  4XXB B;  4WFN 1;  3H3V M;  1FHM A;  2XJR A;  2PPT A;  4POG A;  3HOW L;  4AI0 A;  4YWM A;  3PL5 A;  2CKA A;  3PO2 L;  2EY4 E;  5IYC L;  1BRF A;  3MQK B;  3QQC E;  2M4Y A;  2XJV A;  3LWO B;  1I3Q L;  3FKI L;  4AHZ A;  2R92 L;  5DM7 1;  3PO3 L;  1PFV A;  2JI3 A;  4A3G L;  1LKP A;  5M5W L;  4GS7 D;  5MFP A;  2M6O A;  5AN9 H;  4U67 1;  3H9C A;  2RDV A;  4X6A L;  5C44 L;  4UY8 1;  3HOX L;  1OWB A;  3HOV L;  5IP7 L;  2DSX A;  2ERJ A;  1BQ9 A;  5DM6 1;  3S2H L;  1T9O A;  4A3I L;  4K9F A;  3H0G L;  2B5I D;  4A3J L;  4POF A;  3S1Q L;  2PYA A;  3KYX A;  2LCQ A;  1RYQ A;  4AHX A;  2E2J L;  4V19 6;  1F4L A;  2HR5 A;  4RXN A;  1S2Z A;  2KKD A;  4JAE A;  1R0I A;  4LHL A;  2J9U B;  3I4N L;  1BFY A;  5MFZ A;  3CQZ L;  2B63 L;  4TVM A;  1LKO A;  4AI1 A;  3RZ6 A;  3J7Y 1;  1TWC L;  4ZN1 B;  1TWA L;  2RFK B;  4AR3 A;  5GAD c;  2CKC A;  3S1M L;  2A6E D;  1P7P A;  4A3E L;  7RXN A;  4Y52 L;  4XGH A;  5RXN A;  4AR4 A;  2APO B;  1ODH A;  2PVX A;  1PFU A;  3RZT A;  3RZO L;  3LNL A;  5EIO C;  2ERS A;  1R0F A;  2R93 L;  3LWP B;  1H7V A;  2L0Z A;  1DX8 A;  4C3J L;  2AYJ A;  5IP9 L;  3K7A L;  2R7Z L;  2KN9 A;  4A93 L;  4AHY A;  1I6H L;  3QVD A;  1QYB A;  1T9P A;  2WB1 P;  5C4X L;  3K35 A;  4LHN A;  3LPE B;  4A3C L;  2O5J D;  1QQT A;  3S14 L;  1VCX A;  2XJT A;  1BQ8 A;  3KYY A;  5IYD L;  3GTJ L;  3GTM L;  3M4O L;  4JAF A;  5M5Y L;  1B13 A;  3I4M L;  1VZI A;  2M4V A;  2E2I L;  1R0J A;  2XJP A;  6RXN A;  1C09 A;  3LWV B;  4ZN3 B;  3J7Z 1;  2GMG A;  4A3F L;  3GTO L;  1S24 A;  3P8B A;  1IU6 A;  1Y1V L;  2XJS A;  3MSU A;  5FLM L;  5K2M E;  1LKM A;  4BY7 L;  1SMM A;  1FHH A;  5AI3 A;  5IYB L;  1TWF L;  4A3L L;  3MPS A;  5M3M L;  2MS3 A;  1SMW A;  5M3F L;  1DVB A;  2BE5 D;  2XJQ A;  3S1N L;  2NVY L;  2NVT L;  3KYW A;  5IY0 A;  3ZG6 A;  1VZH A;  1B2O A;  4C2M 1;  3GTL L;  4YWL A;  1RWD A;  3HKZ P;  1NNQ A;  2JI1 A;  5MGN A;  3B08 B;  2JA8 L;  1RDG A;  4ME3 A;  1NXG A;  1JYB A;  3A44 A;  2A69 D;  3S17 L;  2A68 D;  3GTP L;  2ZIX A;  3SS2 A;  3S2D L;  1RB9 A;  1K83 L;  3GTQ L;  3S16 L;  1S30 A;  4JAD A;  5M5X L;  1PFY A;  3VPB E;  1SMU A;  2XJU A;  3HJY B;  1TWH L;  4AR5 A;  2V3B B;  5JVG 1;  2PSM C;  1I50 L;  4Y7N L;  5GAH c;  1YK4 A;  4AI2 A;  3HJW B;  5AI2 A;  2YU9 L;  5C3E L;  3PIO 1;  4A3K L;  2NYD A;  3M3Y L;  2E2H L;  1IU5 A;  2Z3R B;  5JVH 1;  2H12 A;  2NVX L;  3KYV A;  3LWR B;  5GAG c;  4C3I L;  2QL0 A;  2C6B A;  3S1R L;  1B71 A;  3FDJ A;  1Y1W L;  1PZX A;  5MLC 3;  4G6B A;  2VL6 A;  2NVQ L;  4A3M L;  5EIN C;  3WWL A;  3JR7 A;  2CR8 A;  2HVY C;  2VUM L;  3RYG A;  3HAX C;  5C4J L;  2JA6 L;  3H9B A;  3PKJ A;  2JA7 L;  4A3D L;  1LTL A;  1IRN A;  2WAQ P;  3H99 A;  3LWQ B;  1WCM L;  1CAA A;  3KYU A;  1R0G A;  4BBR L;  5H1S c;  3P2A A;  4AHW A;  4BY1 L;  1RYT A;  1BE7 A;  1E8J A;  2M6P A;  3H97 A;  1QCV A;  1PFW A;  4TPU A;  3HOZ L;  4AI3 A;  1CAD A;  1NXE A;  1Z92 B;  1SFO L;  2AUS B;  3PWF A;  1B2J A;  3NFP I;  3GTK L;  2V0E A;  1RDV A;  3HOU L;  4JAG A; 
#chains in the Genus database with same CATH homology
 4AR5 A;  2V3B B;  5JVG 1;  1BQ9 A;  3PZA A;  5DM6 1;  1VCX A;  3PKI A;  1T9O A;  1YK5 A;  2XJT A;  4K9F A;  1IW7 D;  4AR6 A;  1BQ8 A;  3PIP 1;  2JI2 A;  2PSM C;  1ZRP A;  3KYY A;  2B5I D;  1R0H A;  4POF A;  1YUX A;  2C6A A;  8RXN A;  1OWC A;  1YK4 A;  4JAF A;  2PYA A;  3KYX A;  4AI2 A;  5GAH c;  2LCQ A;  5AI2 A;  1B13 A;  1VZI A;  3WWN B;  1RYQ A;  1VZG A;  2M4V A;  4AHX A;  3PIO 1;  1R0J A;  4V19 6;  2NYD A;  2HR5 A;  3B0A B;  2XJP A;  1IU5 A;  4RXN A;  6RXN A;  2Z3R B;  5GAE c;  5MF6 A;  1C09 A;  5JVH 1;  1S2Z A;  4ZN3 B;  2H12 A;  3KYV A;  2KKD A;  2V0F A;  1IRO A;  4JAE A;  3J7Z 1;  2GMG A;  1YUZ A;  5GAG c;  1R0I A;  4LHL A;  1S24 A;  2A6H D;  3P8B A;  3IU3 I;  2QL0 A;  1IU6 A;  2J9U B;  2C6B A;  2K2D A;  2XJS A;  3MSU A;  4B8C D;  5K2M E;  1LKM A;  2Z3Q B;  1SMM A;  4E6Y A;  1YV1 A;  1B71 A;  1BFY A;  1FHH A;  1WJV A;  5AI3 A;  5MFZ A;  2PVE A;  1T9Q A;  4TVM A;  1LKO A;  4XXB B;  3MPS A;  4AI1 A;  4WFN 1;  3RZ6 A;  5MLC 3;  3J7Y 1;  4G6B A;  2VL6 A;  1FHM A;  5EIN C;  2MS3 A;  2XJR A;  3WWL A;  2CR8 A;  2PPT A;  1SMW A;  4POG A;  4ZN1 B;  1DVB A;  4AI0 A;  2BE5 D;  4AR3 A;  3RYG A;  4YWM A;  2O5J D;  2CKA A;  5GAD c;  2XJQ A;  2CKC A;  2A6E D;  3PKJ A;  1LTL A;  1IRN A;  3KYW A;  7RXN A;  5IY0 A;  1BRF A;  4XGH A;  3QQC E;  3ZG6 A;  5RXN A;  1CAA A;  2M4Y A;  1VZH A;  1B2O A;  2XJV A;  4AR4 A;  3KYU A;  1R0G A;  4YWL A;  1ODH A;  4AHZ A;  1RWD A;  5H1S c;  5DM7 1;  3P2A A;  4AHW A;  1NNQ A;  2JI1 A;  2PVX A;  5MGN A;  3RZT A;  3B08 B;  2JI3 A;  3LNL A;  1RYT A;  1BE7 A;  5EIO C;  1E8J A;  2ERS A;  2M6P A;  1R0F A;  1RDG A;  4ME3 A;  1NXG A;  1JYB A;  1LKP A;  3A44 A;  1H7V A;  2L0Z A;  2A69 D;  1DX8 A;  4GS7 D;  1QCV A;  4TPU A;  5MFP A;  2AYJ A;  4AI3 A;  2A68 D;  1CAD A;  1NXE A;  1Z92 B;  2M6O A;  2ZIX A;  2KN9 A;  3SS2 A;  4AHY A;  3PWF A;  1RB9 A;  3QVD A;  5AN9 H;  1B2J A;  3NFP I;  1QYB A;  4U67 1;  1S30 A;  1T9P A;  4JAD A;  2RDV A;  2V0E A;  1RDV A;  4UY8 1;  3VPB E;  3K35 A;  4LHN A;  1OWB A;  1SMU A;  2XJU A;  3LPE B;  4JAG A;  2DSX A;  2ERJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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