1RBLI

Structure determination and refinement of ribulose 1,5 bisphosphate carboxylase(slash)oxygenase from synechococcus pcc6301
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
109
structure length
109
Chain Sequence
SMKTLPKERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTSSFIVHRPGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN
publication title Structure determination and refinement of ribulose 1,5-bisphosphate carboxylase/oxygenase from Synechococcus PCC6301.
pubmed doi rcsb
source organism Synechococcus elongatus
total genus 21
structure length 109
sequence length 109
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 1993-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1rblI00
1RCOC 1AUSS 1RLCS 1IR21 4F0MB 4F0HB 4HHHS 3ZXWB 1UWAC 1EJ7S 1IWAB 1BXNI 1UPMC 2V67I 2V6AI 1SVDM 8RUCI 1UPPI 1RLDS 2V68I 3RUBS 1IR1S 1GK8I 1RSCI 1BWVS 2V69I 1UZDC 1UZHC 2V63I 1RCXC 1WDDS 1RBOC 1AA1C 1UW9C 1RBLI 4F0KB 4RUBS 2VDII 2VDHI 3AXMS 1RXOC 3AXKS 4MKVS 2YBVB
chains in the Genus database with same CATH superfamily
1RCOC 5DM70 3QOYA 1MZPA 1AUSS 1RLCS 1IR21 1DWUA 4F0MB 4F0HB 4HHHS 3ZXWB 1UWAC 1CJSA 1EJ7S 1IWAB 1BXNI 1UPMC 2V67I 2V6AI 1SVDM 3FPNA 8RUCI 3U56A 1UPPI 2DFXI 4REOA 1RLDS 4F9TA 2V68I 3ZQJA 2FHZA 3RUBS 1IR1S 1U63A 1GK8I 1I2AA 4QGBA 3TG8A 1RSCI 1BWVS 2V69I 1UZDC 1ZHOA 1UZHC 4DFCB 2V63I 1RCXC 1WDDS 4QVIA 1RBOC 3UMYA 1AA1C 2HW8A 1UW9C 3U4MA 1RBLI 4F0KB 4RUBS 2VDII 2VDHI 1AD2A 1RXOC 3AXMS 5DM60 3AXKS 4MKVS 4LQ4A 2YBVB 4QG3A
chains in the Genus database with same CATH topology
1RCOC 1AUSS 1RLCS 1IR21 4F0MB 4F0HB 4HHHS 3ZXWB 1UWAC 1EJ7S 1IWAB 1BXNI 1UPMC 2V67I 2V6AI 1SVDM 8RUCI 1UPPI 1RLDS 2V68I 3RUBS 1IR1S 1GK8I 1RSCI 1BWVS 2V69I 1UZDC 1UZHC 2V63I 1RCXC 1WDDS 1RBOC 1AA1C 1UW9C 1RBLI 4F0KB 4RUBS 2VDII 2VDHI 3AXMS 1RXOC 3AXKS 4MKVS 2YBVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RCO C;  1AUS S;  1RLC S;  1IR2 1;  4F0M B;  4F0H B;  4HHH S;  3ZXW B;  1UWA C;  1EJ7 S;  1IWA B;  1BXN I;  1UPM C;  2V67 I;  2V6A I;  1SVD M;  8RUC I;  1UPP I;  1RLD S;  2V68 I;  3RUB S;  1IR1 S;  1GK8 I;  1RSC I;  1BWV S;  2V69 I;  1UZD C;  1UZH C;  2V63 I;  1RCX C;  1WDD S;  1RBO C;  1AA1 C;  1UW9 C;  1RBL I;  4F0K B;  4RUB S;  2VDI I;  2VDH I;  3AXM S;  1RXO C;  3AXK S;  4MKV S;  2YBV B; 
#chains in the Genus database with same CATH topology
 1RCO C;  5DM7 0;  3QOY A;  1MZP A;  1AUS S;  1RLC S;  1IR2 1;  1DWU A;  4F0M B;  4F0H B;  4HHH S;  3ZXW B;  1UWA C;  1CJS A;  1EJ7 S;  1IWA B;  1BXN I;  1UPM C;  2V67 I;  2V6A I;  1SVD M;  3FPN A;  8RUC I;  3U56 A;  1UPP I;  2DFX I;  4REO A;  1RLD S;  4F9T A;  2V68 I;  3ZQJ A;  2FHZ A;  3RUB S;  1IR1 S;  1U63 A;  1GK8 I;  1I2A A;  4QGB A;  3TG8 A;  1RSC I;  1BWV S;  2V69 I;  1UZD C;  1ZHO A;  1UZH C;  4DFC B;  2V63 I;  1RCX C;  1WDD S;  4QVI A;  1RBO C;  3UMY A;  1AA1 C;  2HW8 A;  1UW9 C;  3U4M A;  1RBL I;  4F0K B;  4RUB S;  2VDI I;  2VDH I;  1AD2 A;  1RXO C;  3AXM S;  5DM6 0;  3AXK S;  4MKV S;  4LQ4 A;  2YBV B;  4QG3 A; 
#chains in the Genus database with same CATH homology
 1RCO C;  1AUS S;  1RLC S;  1IR2 1;  4F0M B;  4F0H B;  4HHH S;  3ZXW B;  1UWA C;  1EJ7 S;  1IWA B;  1BXN I;  1UPM C;  2V67 I;  2V6A I;  1SVD M;  8RUC I;  1UPP I;  1RLD S;  2V68 I;  3RUB S;  1IR1 S;  1GK8 I;  1RSC I;  1BWV S;  2V69 I;  1UZD C;  1UZH C;  2V63 I;  1RCX C;  1WDD S;  1RBO C;  1AA1 C;  1UW9 C;  1RBL I;  4F0K B;  4RUB S;  2VDI I;  2VDH I;  3AXM S;  1RXO C;  3AXK S;  4MKV S;  2YBV B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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