1RF3A

Structurally distinct recognition motifs in lymphotoxin-b receptor and cd40 for traf-mediated signaling
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
192
structure length
192
Chain Sequence
NTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPDP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords TNF receptor associated factor 3
publication title Structurally distinct recognition motifs in lymphotoxin-beta receptor and CD40 for tumor necrosis factor receptor-associated factor (TRAF)-mediated signaling.
pubmed doi rcsb
source organism Homo sapiens
total genus 31
structure length 192
sequence length 192
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2003-11-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1rf3A00
1D01A 1L0AA 2AN6A 3HQHA 3HU6A 4I7DA 3IVVA 1D00A 1LB5A 4I7CA 3HSVA 1ZMSA 4X3GA 4C9ZA 4JJQA 2XXNA 3IVQA 1KZZA 4KG9A 5E1TA 2CR2A 1D0AA 4GWMA 2F1XA 1LB4A 1YY6A 4CA1A 4K8UA 2FOPA 4Z8MA 1D0JA 3IVBA 2A25A 3ZJBA 4I7BA 2F1ZA 3HQMA 2FOJA 4GWNA 2GKWA 3HQIA 1RF3A 1CA4A 1YZEA 2F1WA 3MQRA 1CZZA 4O1VA 2FOOA 1FLLA 1FLKA 1F3VB 3HQLA 4GJHA 1K2FA 2F1YA 1CA9A 3MQSC 4YSIA 1LB6A 1QSCA 5H9MA 1CZYA 4GHUA 4M4EA
chains in the Genus database with same CATH superfamily
1D01A 1L0AA 2AN6A 3HQHA 3HU6A 4I7DA 3IVVA 1D00A 1LB5A 4I7CA 3HSVA 1ZMSA 4X3GA 4C9ZA 4JJQA 2XXNA 3IVQA 1KZZA 4KG9A 5E1TA 2CR2A 1D0AA 4GWMA 2F1XA 1LB4A 1YY6A 4CA1A 4K8UA 2FOPA 4Z8MA 1D0JA 3IVBA 2A25A 3ZJBA 4I7BA 2F1ZA 3HQMA 2FOJA 4GWNA 2GKWA 3HQIA 1RF3A 1CA4A 1YZEA 2F1WA 3MQRA 1CZZA 4O1VA 2FOOA 1FLLA 1FLKA 1F3VB 3HQLA 4GJHA 1K2FA 2F1YA 1CA9A 3MQSC 4YSIA 1LB6A 1QSCA 5H9MA 1CZYA 4GHUA 4M4EA
chains in the Genus database with same CATH topology
1D01A 1L0AA 2AN6A 3HQHA 3HU6A 4I7DA 3IVVA 1D00A 1LB5A 4I7CA 3HSVA 1ZMSA 4X3GA 4C9ZA 4JJQA 2XXNA 3IVQA 1KZZA 4KG9A 5E1TA 2CR2A 1D0AA 4GWMA 2F1XA 1LB4A 1YY6A 4CA1A 4K8UA 2FOPA 4Z8MA 1D0JA 3IVBA 2A25A 3ZJBA 4I7BA 2F1ZA 3HQMA 2FOJA 4GWNA 2GKWA 3HQIA 1RF3A 1CA4A 1YZEA 2F1WA 3MQRA 1CZZA 4O1VA 2FOOA 1FLLA 1FLKA 1F3VB 3HQLA 4GJHA 1K2FA 2F1YA 1CA9A 3MQSC 4YSIA 1LB6A 1QSCA 5H9MA 1CZYA 4GHUA 4M4EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D01 A;  1L0A A;  2AN6 A;  3HQH A;  3HU6 A;  4I7D A;  3IVV A;  1D00 A;  1LB5 A;  4I7C A;  3HSV A;  1ZMS A;  4X3G A;  4C9Z A;  4JJQ A;  2XXN A;  3IVQ A;  1KZZ A;  4KG9 A;  5E1T A;  2CR2 A;  1D0A A;  4GWM A;  2F1X A;  1LB4 A;  1YY6 A;  4CA1 A;  4K8U A;  2FOP A;  4Z8M A;  1D0J A;  3IVB A;  2A25 A;  3ZJB A;  4I7B A;  2F1Z A;  3HQM A;  2FOJ A;  4GWN A;  2GKW A;  3HQI A;  1RF3 A;  1CA4 A;  1YZE A;  2F1W A;  3MQR A;  1CZZ A;  4O1V A;  2FOO A;  1FLL A;  1FLK A;  1F3V B;  3HQL A;  4GJH A;  1K2F A;  2F1Y A;  1CA9 A;  3MQS C;  4YSI A;  1LB6 A;  1QSC A;  5H9M A;  1CZY A;  4GHU A;  4M4E A; 
#chains in the Genus database with same CATH topology
 1D01 A;  1L0A A;  2AN6 A;  3HQH A;  3HU6 A;  4I7D A;  3IVV A;  1D00 A;  1LB5 A;  4I7C A;  3HSV A;  1ZMS A;  4X3G A;  4C9Z A;  4JJQ A;  2XXN A;  3IVQ A;  1KZZ A;  4KG9 A;  5E1T A;  2CR2 A;  1D0A A;  4GWM A;  2F1X A;  1LB4 A;  1YY6 A;  4CA1 A;  4K8U A;  2FOP A;  4Z8M A;  1D0J A;  3IVB A;  2A25 A;  3ZJB A;  4I7B A;  2F1Z A;  3HQM A;  2FOJ A;  4GWN A;  2GKW A;  3HQI A;  1RF3 A;  1CA4 A;  1YZE A;  2F1W A;  3MQR A;  1CZZ A;  4O1V A;  2FOO A;  1FLL A;  1FLK A;  1F3V B;  3HQL A;  4GJH A;  1K2F A;  2F1Y A;  1CA9 A;  3MQS C;  4YSI A;  1LB6 A;  1QSC A;  5H9M A;  1CZY A;  4GHU A;  4M4E A; 
#chains in the Genus database with same CATH homology
 1D01 A;  1L0A A;  2AN6 A;  3HQH A;  3HU6 A;  4I7D A;  3IVV A;  1D00 A;  1LB5 A;  4I7C A;  3HSV A;  1ZMS A;  4X3G A;  4C9Z A;  4JJQ A;  2XXN A;  3IVQ A;  1KZZ A;  4KG9 A;  5E1T A;  2CR2 A;  1D0A A;  4GWM A;  2F1X A;  1LB4 A;  1YY6 A;  4CA1 A;  4K8U A;  2FOP A;  4Z8M A;  1D0J A;  3IVB A;  2A25 A;  3ZJB A;  4I7B A;  2F1Z A;  3HQM A;  2FOJ A;  4GWN A;  2GKW A;  3HQI A;  1RF3 A;  1CA4 A;  1YZE A;  2F1W A;  3MQR A;  1CZZ A;  4O1V A;  2FOO A;  1FLL A;  1FLK A;  1F3V B;  3HQL A;  4GJH A;  1K2F A;  2F1Y A;  1CA9 A;  3MQS C;  4YSI A;  1LB6 A;  1QSC A;  5H9M A;  1CZY A;  4GHU A;  4M4E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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