1RFEA

Crystal structure of conserved hypothetical protein rv2991 from mycobacterium tuberculosis
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
160
structure length
159
Chain Sequence
TKQRADIVMSEAEIADFVNSSRTGTLATIGPDGQPHLTAMWYAVIDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTLRGVSFEGVAEIVEEPEALHRVGVSVWERYTGPYTDEKPMVDQMMNKRVGVRIVARRTRSWDHRKLGLPHMSVGGSTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein Rv2991
publication title The crystal structure of Rv2991 from Mycobacterium tuberculosis: An F420binding protein with unknown function.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 37
structure length 159
sequence length 160
ec nomenclature
pdb deposition date 2003-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1rfeA01
2FURA 1G78A 1G77A 3TGVA 2OL5A 2NR4A 3RH7A 1W3RA 3E4VA 1EJEA 3ZOFA 3BA3A 3BNKA 3ZOGA 2VPAA 4R82A 5BNCA 4ZKYA 3U5WA 3U35A 1NRGA 4HMSA 1WLIA 1G79A 3U0IA 3R5RA 2AQ6A 1YOAA 3HY8A 3VY2A 1W9AA 1Y30A 3CP3A 3DMBA 1G76A 3B5MA 2X1JA 3IN6A 3R5PA 3GASA 3U34A 5JABA 3AMFA 2D37A 4IRAA 1WV4A 2HTDA 3KYFA 3R5ZA 3BPKA 1JNWA 1WLKA 3PFTA 1RZ1A 1USCA 1XHNA 4L82A 3VY5A 2QCKA 1AXJA 2R0XA 1VL7A 3HMZA 5CHEC 1TY9A 1RZ0A 4XHYA 2OU5A 3FGEA 2FHQA 1YLNA 2IMLA 3R5WA 4YBNA 3R5LA 4HMXA 2ECRA 1T9MA 2FG9A 1W3QA 2D38A 3K87A 3K86A 4HMUA 2HQ9A 3R5YA 2ARZA 3SWJA 2RE7A 3DNHA 3AWHA 1USFA 2E83A 2HQ7A 3A6QA 1CI0A 2Q9KA 2ED4A 4QVBA 4Z85A 2A2JA 3ZOEA 1I0SA 3ZOHA 3ZODA 2QEAA 2D36A 1W3PA 2I02A 4YWNA 4F07A 4Y9IA 2IABA 1XXOA 1WGBA 2HHZA 4HX6A 1FLMA 2ASFA 1W3OA 2HTIA 1DNLA 4N7RC 3EC6A 2R6VA 3F7EA 3K88A 3CB0A 4HMVA 3H96A 3DB0A 1RFEA 4XJ2A 3A20A 4HMTA 2IG6A 5ESCA 2I51A 2RDEA 1I0RA 2ECUA 5CHOA 3A6RA 2PTFA 2GJGA 3ZOCA 2D5MA 3KYGA 4HMWA 3VYAA 3NFWA 2X1KA 3FKHA
chains in the Genus database with same CATH superfamily
2FURA 1G78A 1G77A 3TGVA 2OL5A 2NR4A 3RH7A 1W3RA 3E4VA 1EJEA 3ZOFA 3BA3A 2P5ZX 3BNKA 3ZOGA 2VPAA 4R82A 5BNCA 4ZKYA 3U5WA 3U35A 1NRGA 4HMSA 1WLIA 1G79A 3V4HA 3U0IA 3R5RA 2AQ6A 1YOAA 3HY8A 3VY2A 1W9AA 1Y30A 3CP3A 3DMBA 1G76A 3B5MA 2X1JA 3IN6A 3R5PA 3GASA 3U34A 5JABA 3AMFA 2D37A 4IRAA 2GUJA 1Y12A 1WV4A 2HTDA 3KYFA 3R5ZA 3BPKA 1JNWA 1WLKA 2L1TA 3PFTA 1RZ1A 1USCA 1XHNA 4L82A 3VY5A 2QCKA 1AXJA 2R0XA 1VL7A 3HMZA 4HKHA 5CHEC 1TY9A 1RZ0A 4XHYA 2OU5A 3FGEA 2FHQA 1YLNA 2IMLA 3R5WA 4YBNA 3R5LA 4HMXA 2ECRA 1T9MA 2FG9A 1W3QA 2D38A 3K87A 3K86A 4HMUA 2HQ9A 3R5YA 2ARZA 3SWJA 2RE7A 3DNHA 3AWHA 1USFA 2E83A 2HQ7A 3A6QA 1CI0A 2Q9KA 2ED4A 4QVBA 4TV4A 4Z85A 2A2JA 3ZOEA 1I0SA 3ZOHA 3ZODA 4UHVA 2QEAA 2D36A 1W3PA 2I02A 4YWNA 4F07A 4W64A 4Y9IA 2IABA 1XXOA 1WGBA 2HHZA 4HX6A 1FLMA 2ASFA 3HE1A 1W3OA 2HTIA 1DNLA 4N7RC 3EC6A 3EAAA 2R6VA 3F7EA 3K88A 3CB0A 4HMVA 3H96A 3DB0A 1RFEA 4XJ2A 2K4QA 3A20A 4HMTA 2IG6A 5ESCA 2I51A 2RDEA 1I0RA 2ECUA 5CHOA 3A6RA 2PTFA 2GJGA 3ZOCA 2D5MA 4MTKA 3KYGA 4HMWA 3VYAA 3NFWA 2X1KA 3FKHA
chains in the Genus database with same CATH topology
2FURA 1G78A 1G77A 3TGVA 2OL5A 2NR4A 3RH7A 1W3RA 3E4VA 1EJEA 3ZOFA 3BA3A 3BNKA 3ZOGA 2VPAA 4R82A 5BNCA 4ZKYA 3U5WA 3U35A 1NRGA 4HMSA 1WLIA 1G79A 3U0IA 3R5RA 2AQ6A 1YOAA 3HY8A 3VY2A 1W9AA 1Y30A 3CP3A 3DMBA 1G76A 3B5MA 2X1JA 3IN6A 3R5PA 3GASA 3U34A 5JABA 3AMFA 2D37A 4IRAA 1WV4A 2HTDA 3KYFA 3R5ZA 3BPKA 1JNWA 1WLKA 3PFTA 1RZ1A 1USCA 1XHNA 4L82A 3VY5A 2QCKA 1AXJA 2R0XA 1VL7A 3HMZA 5CHEC 1TY9A 1RZ0A 4XHYA 2OU5A 3FGEA 2FHQA 1YLNA 2IMLA 3R5WA 4YBNA 3R5LA 4HMXA 2ECRA 1T9MA 2FG9A 1W3QA 2D38A 3K87A 3K86A 4HMUA 2HQ9A 3R5YA 2ARZA 3SWJA 2RE7A 3DNHA 3AWHA 1USFA 2E83A 2HQ7A 3A6QA 1CI0A 2Q9KA 2ED4A 4QVBA 4Z85A 2A2JA 3ZOEA 1I0SA 3ZOHA 3ZODA 2QEAA 2D36A 1W3PA 2I02A 4YWNA 4F07A 4Y9IA 2IABA 1XXOA 1WGBA 2HHZA 4HX6A 1FLMA 2ASFA 1W3OA 2HTIA 1DNLA 4N7RC 3EC6A 2R6VA 3F7EA 3K88A 3CB0A 4HMVA 3H96A 3DB0A 1RFEA 4XJ2A 3A20A 4HMTA 2IG6A 5ESCA 2I51A 2RDEA 1I0RA 2ECUA 5CHOA 3A6RA 2PTFA 2GJGA 3ZOCA 2D5MA 3KYGA 4HMWA 3VYAA 3NFWA 2X1KA 3FKHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FUR A;  1G78 A;  1G77 A;  3TGV A;  2OL5 A;  2NR4 A;  3RH7 A;  1W3R A;  3E4V A;  1EJE A;  3ZOF A;  3BA3 A;  3BNK A;  3ZOG A;  2VPA A;  4R82 A;  5BNC A;  4ZKY A;  3U5W A;  3U35 A;  1NRG A;  4HMS A;  1WLI A;  1G79 A;  3U0I A;  3R5R A;  2AQ6 A;  1YOA A;  3HY8 A;  3VY2 A;  1W9A A;  1Y30 A;  3CP3 A;  3DMB A;  1G76 A;  3B5M A;  2X1J A;  3IN6 A;  3R5P A;  3GAS A;  3U34 A;  5JAB A;  3AMF A;  2D37 A;  4IRA A;  1WV4 A;  2HTD A;  3KYF A;  3R5Z A;  3BPK A;  1JNW A;  1WLK A;  3PFT A;  1RZ1 A;  1USC A;  1XHN A;  4L82 A;  3VY5 A;  2QCK A;  1AXJ A;  2R0X A;  1VL7 A;  3HMZ A;  5CHE C;  1TY9 A;  1RZ0 A;  4XHY A;  2OU5 A;  3FGE A;  2FHQ A;  1YLN A;  2IML A;  3R5W A;  4YBN A;  3R5L A;  4HMX A;  2ECR A;  1T9M A;  2FG9 A;  1W3Q A;  2D38 A;  3K87 A;  3K86 A;  4HMU A;  2HQ9 A;  3R5Y A;  2ARZ A;  3SWJ A;  2RE7 A;  3DNH A;  3AWH A;  1USF A;  2E83 A;  2HQ7 A;  3A6Q A;  1CI0 A;  2Q9K A;  2ED4 A;  4QVB A;  4Z85 A;  2A2J A;  3ZOE A;  1I0S A;  3ZOH A;  3ZOD A;  2QEA A;  2D36 A;  1W3P A;  2I02 A;  4YWN A;  4F07 A;  4Y9I A;  2IAB A;  1XXO A;  1WGB A;  2HHZ A;  4HX6 A;  1FLM A;  2ASF A;  1W3O A;  2HTI A;  1DNL A;  4N7R C;  3EC6 A;  2R6V A;  3F7E A;  3K88 A;  3CB0 A;  4HMV A;  3H96 A;  3DB0 A;  1RFE A;  4XJ2 A;  3A20 A;  4HMT A;  2IG6 A;  5ESC A;  2I51 A;  2RDE A;  1I0R A;  2ECU A;  5CHO A;  3A6R A;  2PTF A;  2GJG A;  3ZOC A;  2D5M A;  3KYG A;  4HMW A;  3VYA A;  3NFW A;  2X1K A;  3FKH A; 
#chains in the Genus database with same CATH topology
 2FUR A;  1G78 A;  1G77 A;  3TGV A;  2OL5 A;  2NR4 A;  3RH7 A;  1W3R A;  3E4V A;  1EJE A;  3ZOF A;  3BA3 A;  2P5Z X;  3BNK A;  3ZOG A;  2VPA A;  4R82 A;  5BNC A;  4ZKY A;  3U5W A;  3U35 A;  1NRG A;  4HMS A;  1WLI A;  1G79 A;  3V4H A;  3U0I A;  3R5R A;  2AQ6 A;  1YOA A;  3HY8 A;  3VY2 A;  1W9A A;  1Y30 A;  3CP3 A;  3DMB A;  1G76 A;  3B5M A;  2X1J A;  3IN6 A;  3R5P A;  3GAS A;  3U34 A;  5JAB A;  3AMF A;  2D37 A;  4IRA A;  2GUJ A;  1Y12 A;  1WV4 A;  2HTD A;  3KYF A;  3R5Z A;  3BPK A;  1JNW A;  1WLK A;  2L1T A;  3PFT A;  1RZ1 A;  1USC A;  1XHN A;  4L82 A;  3VY5 A;  2QCK A;  1AXJ A;  2R0X A;  1VL7 A;  3HMZ A;  4HKH A;  5CHE C;  1TY9 A;  1RZ0 A;  4XHY A;  2OU5 A;  3FGE A;  2FHQ A;  1YLN A;  2IML A;  3R5W A;  4YBN A;  3R5L A;  4HMX A;  2ECR A;  1T9M A;  2FG9 A;  1W3Q A;  2D38 A;  3K87 A;  3K86 A;  4HMU A;  2HQ9 A;  3R5Y A;  2ARZ A;  3SWJ A;  2RE7 A;  3DNH A;  3AWH A;  1USF A;  2E83 A;  2HQ7 A;  3A6Q A;  1CI0 A;  2Q9K A;  2ED4 A;  4QVB A;  4TV4 A;  4Z85 A;  2A2J A;  3ZOE A;  1I0S A;  3ZOH A;  3ZOD A;  4UHV A;  2QEA A;  2D36 A;  1W3P A;  2I02 A;  4YWN A;  4F07 A;  4W64 A;  4Y9I A;  2IAB A;  1XXO A;  1WGB A;  2HHZ A;  4HX6 A;  1FLM A;  2ASF A;  3HE1 A;  1W3O A;  2HTI A;  1DNL A;  4N7R C;  3EC6 A;  3EAA A;  2R6V A;  3F7E A;  3K88 A;  3CB0 A;  4HMV A;  3H96 A;  3DB0 A;  1RFE A;  4XJ2 A;  2K4Q A;  3A20 A;  4HMT A;  2IG6 A;  5ESC A;  2I51 A;  2RDE A;  1I0R A;  2ECU A;  5CHO A;  3A6R A;  2PTF A;  2GJG A;  3ZOC A;  2D5M A;  4MTK A;  3KYG A;  4HMW A;  3VYA A;  3NFW A;  2X1K A;  3FKH A; 
#chains in the Genus database with same CATH homology
 2FUR A;  1G78 A;  1G77 A;  3TGV A;  2OL5 A;  2NR4 A;  3RH7 A;  1W3R A;  3E4V A;  1EJE A;  3ZOF A;  3BA3 A;  3BNK A;  3ZOG A;  2VPA A;  4R82 A;  5BNC A;  4ZKY A;  3U5W A;  3U35 A;  1NRG A;  4HMS A;  1WLI A;  1G79 A;  3U0I A;  3R5R A;  2AQ6 A;  1YOA A;  3HY8 A;  3VY2 A;  1W9A A;  1Y30 A;  3CP3 A;  3DMB A;  1G76 A;  3B5M A;  2X1J A;  3IN6 A;  3R5P A;  3GAS A;  3U34 A;  5JAB A;  3AMF A;  2D37 A;  4IRA A;  1WV4 A;  2HTD A;  3KYF A;  3R5Z A;  3BPK A;  1JNW A;  1WLK A;  3PFT A;  1RZ1 A;  1USC A;  1XHN A;  4L82 A;  3VY5 A;  2QCK A;  1AXJ A;  2R0X A;  1VL7 A;  3HMZ A;  5CHE C;  1TY9 A;  1RZ0 A;  4XHY A;  2OU5 A;  3FGE A;  2FHQ A;  1YLN A;  2IML A;  3R5W A;  4YBN A;  3R5L A;  4HMX A;  2ECR A;  1T9M A;  2FG9 A;  1W3Q A;  2D38 A;  3K87 A;  3K86 A;  4HMU A;  2HQ9 A;  3R5Y A;  2ARZ A;  3SWJ A;  2RE7 A;  3DNH A;  3AWH A;  1USF A;  2E83 A;  2HQ7 A;  3A6Q A;  1CI0 A;  2Q9K A;  2ED4 A;  4QVB A;  4Z85 A;  2A2J A;  3ZOE A;  1I0S A;  3ZOH A;  3ZOD A;  2QEA A;  2D36 A;  1W3P A;  2I02 A;  4YWN A;  4F07 A;  4Y9I A;  2IAB A;  1XXO A;  1WGB A;  2HHZ A;  4HX6 A;  1FLM A;  2ASF A;  1W3O A;  2HTI A;  1DNL A;  4N7R C;  3EC6 A;  2R6V A;  3F7E A;  3K88 A;  3CB0 A;  4HMV A;  3H96 A;  3DB0 A;  1RFE A;  4XJ2 A;  3A20 A;  4HMT A;  2IG6 A;  5ESC A;  2I51 A;  2RDE A;  1I0R A;  2ECU A;  5CHO A;  3A6R A;  2PTF A;  2GJG A;  3ZOC A;  2D5M A;  3KYG A;  4HMW A;  3VYA A;  3NFW A;  2X1K A;  3FKH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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