1RFXA

Crystal structure of resisitin
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
89
structure length
89
Chain Sequence
CPIDEAIDKKIKQDFNSLFPNAIKNIGLNCWTVSSRGKLASCPEGTAVLSCSCGSACGSWDIREEKVCHCQCARIDWTAARCCKLQVAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/growth factor
molecule keywords Resistin
publication title Disulfide-dependent multimeric assembly of resistin family hormones
pubmed doi rcsb
source organism Mus musculus
total genus 16
structure length 89
sequence length 89
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2003-11-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06954 Resistin Resistin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1660.20 Alpha Beta 2-Layer Sandwich Dodecin subunit-like Dodecin subunit-like 1rfxA02
1RGXA 1RFXA 1RH7A
chains in the Genus database with same CATH superfamily
2CC8A 4B2HA 2DEHA 2M2JA 2VKFA 2YIZA 3ONRA 4B2JA 1RGXA 2CCCA 1RH7A 2JNAA 4B2KA 2CC9A 2NOCA 2JZ7A 2CIEA 2CIFA 2V21A 2MA4A 3OQTA 2YJ0A 2V18A 3W1EA 2VKGA 2CCBA 2VYXA 2CC6A 1MOGA 2MA8A 2CJCA 2UX9A 2V19A 4EVUA 2VX9A 1RFXA 4B2MA 2DEGA 2CC7A 2CZ8A 2VXAA 2DEVA
chains in the Genus database with same CATH topology
1RFXA 3W1EA 1RGXA 1RH7A 2JZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RGX A;  1RFX A;  1RH7 A; 
#chains in the Genus database with same CATH topology
 2CC8 A;  4B2H A;  2DEH A;  2M2J A;  2VKF A;  2YIZ A;  3ONR A;  4B2J A;  1RGX A;  2CCC A;  1RH7 A;  2JNA A;  4B2K A;  2CC9 A;  2NOC A;  2JZ7 A;  2CIE A;  2CIF A;  2V21 A;  2MA4 A;  3OQT A;  2YJ0 A;  2V18 A;  3W1E A;  2VKG A;  2CCB A;  2VYX A;  2CC6 A;  1MOG A;  2MA8 A;  2CJC A;  2UX9 A;  2V19 A;  4EVU A;  2VX9 A;  1RFX A;  4B2M A;  2DEG A;  2CC7 A;  2CZ8 A;  2VXA A;  2DEV A; 
#chains in the Genus database with same CATH homology
 1RFX A;  3W1E A;  1RGX A;  1RH7 A;  2JZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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