1RGJA

Nmr structure of the complex between alpha-bungarotoxin and mimotope of the nicotinic acetylcholine receptor with enhanced activity
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
74
structure length
74
Chain Sequence
IVCHTTATSPISAVTCPPGENLCYRKMWCDAFCSSRGKVVELGCAATCPSKKPYEEVTCCSTDKCNPHPKQRPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords long neurotoxin 1
publication title NMR and MD studies on the interaction between ligand peptides and alpha-bungarotoxin.
pubmed doi rcsb
total genus 8
structure length 74
sequence length 74
ec nomenclature
pdb deposition date 2003-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1rgjA00
3PLCA 4P7UA 3NDSA 1RGJA 4EY8B 2L03A 1F8UB 3EVSC 1ZADA 1FASA 2MJ0A 1LXGA 1F94A 2I9BE 3U74U 1HAAA 4BDTB 1KC4A 1NORA 2H5FA 2N99A 1HC9B 1TFSA 2JQPA 1FSSB 2BHIA 1CDSA 1ERAA 1CRFA 1IDGA 2MUOA 3QB4B 1IQ9A 5IMYC 2CCXA 1FF4A 3NH7A 1KTZB 4IYEA 3NEQA 4BIKB 1PLOA 2QC1A 1KS6A 3KFDE 1HOYA 2CRTA 1KU6B 2PJYC 4QTIU 4FAOE 1LX5B 1JBDA 1V6PA 3BT1U 4UY2C 1ABTA 1VB0A 2H62D 1QM7A 3FEVA 1CCQA 1FSCA 1CXNA 4HQPF 1S4YA 1QKEA 5EBXA 2CTXA 2VLWA 2H62C 2CDXA 1IK8A 1HC9A 1KFHA 2L5SA 2PJYB 5DU1A 1TXAA 1CXOA 2ERAA 6EBXA 3ERAA 4XJJA 1W6BA 1COEA 2UWRA 1IDLA 1UG4A 2QJAC 5IMTD 3HH7A 3VTSA 1L4WA 2MJYA 1CB9A 1NTXA 1CVOA 3KFDI 1NXBA 2HLQA 1NYSA 2MHYA 1TXBA 1YWHA 1QKDA 1H0JA 1B41B 2QJBC 1CTXA 4OM5A 1CDTA 3EBXA 1CODA 3LAQU 1FFJA 2H7ZA 2CRSA 2H64C 2H7ZB 2X8BB 1IJCA 1DRSA 2J8BA 2OFSA 1G6MA 2BTXA 1RL5A 1JGKA 1ES7B 1NYUA 2ABXA 2MJ4A 4ZQYA 2K3GA 1NEAA 5DZ5A 2HLRA 2FD6U 2LCRA 1BTEA 2MUPA 1KBAA 4RUDA 2LA1A 2H64B 2H8UA 1CDQA 3BT2U 4LFTA 1CDRA 1BXPA 1LXHA 1MAHF 1CREA 1KBTA 2MFAA 4FAOC 4AEAA 1ERGA 1M9ZA 1ONJA 3U73U 4DO8A 1HAJA 2GOOC 5DO6A 1FRAA 1XT3A 1NTNA 1IDHA 1KL8A 1I02A 1REWC 1KBSA 1MR6A 1TGXA 4OM4A 1CHVS 1IKCA 2JVEA 1LSIA 2QJ9C 1JE9A 2UX2A 2GOOB 1IDIA 1KXIA 2NBTA 1LJZA
chains in the Genus database with same CATH superfamily
3PLCA 4P7UA 3NDSA 1RGJA 4EY8B 2L03A 1F8UB 3EVSC 1ZADA 1FASA 2MJ0A 1LXGA 1F94A 2I9BE 3U74U 1HAAA 4BDTB 1KC4A 1NORA 2H5FA 2N99A 1HC9B 1TFSA 2JQPA 1FSSB 2BHIA 1CDSA 1ERAA 1CRFA 1IDGA 2MUOA 3QB4B 1IQ9A 5IMYC 2CCXA 1FF4A 3NH7A 1KTZB 4IYEA 3NEQA 4BIKB 1PLOA 2QC1A 1KS6A 3KFDE 1HOYA 2CRTA 1KU6B 2PJYC 4QTIU 4FAOE 1LX5B 1JBDA 1V6PA 3BT1U 4UY2C 1ABTA 1VB0A 2H62D 1QM7A 3FEVA 1CCQA 1FSCA 1CXNA 4HQPF 1S4YA 1QKEA 5EBXA 2CTXA 2VLWA 2H62C 2CDXA 1IK8A 1HC9A 1KFHA 2L5SA 2PJYB 5DU1A 1TXAA 1CXOA 2ERAA 6EBXA 3ERAA 4XJJA 1W6BA 1COEA 2UWRA 1IDLA 1UG4A 2QJAC 5IMTD 3HH7A 3VTSA 1L4WA 2MJYA 1CB9A 1NTXA 1CVOA 3KFDI 1NXBA 2HLQA 1NYSA 2MHYA 1TXBA 1YWHA 1QKDA 1H0JA 1B41B 2QJBC 1CTXA 4OM5A 1CDTA 3EBXA 1CODA 3LAQU 1FFJA 4KSNA 2H7ZA 2CRSA 2H64C 2H7ZB 2X8BB 1IJCA 1DRSA 2J8BA 2OFSA 1G6MA 2BTXA 1RL5A 1JGKA 1ES7B 1NYUA 2ABXA 2MJ4A 4ZQYA 2K3GA 1NEAA 5DZ5A 2HLRA 2FD6U 2LCRA 1BTEA 2MUPA 1KBAA 4RUDA 2LA1A 2H64B 2H8UA 1CDQA 3BT2U 4LFTA 1CDRA 1BXPA 1LXHA 1MAHF 1CREA 1KBTA 2MFAA 4FAOC 4AEAA 1ERGA 1M9ZA 1ONJA 3U73U 4DO8A 1HAJA 2GOOC 5DO6A 1FRAA 1XT3A 1NTNA 1IDHA 1KL8A 1I02A 1REWC 1KBSA 1MR6A 1TGXA 4OM4A 1CHVS 1IKCA 2JVEA 1LSIA 2QJ9C 1JE9A 2UX2A 2GOOB 1IDIA 1KXIA 2NBTA 1LJZA
chains in the Genus database with same CATH topology
3PLCA 4P7UA 3NDSA 1RGJA 4EY8B 2L03A 1F8UB 3EVSC 1ZADA 1FASA 2MJ0A 1LXGA 1F94A 2I9BE 3U74U 1HAAA 4BDTB 1KC4A 1NORA 2H5FA 2N99A 1HC9B 1TFSA 2JQPA 1FSSB 2BHIA 1CDSA 1ERAA 1CRFA 1IDGA 2MUOA 3QB4B 1IQ9A 5IMYC 2CCXA 1FF4A 3NH7A 1KTZB 4IYEA 3NEQA 4BIKB 1PLOA 2QC1A 1KS6A 3KFDE 1HOYA 2CRTA 1KU6B 2PJYC 4QTIU 4FAOE 1LX5B 1JBDA 1V6PA 3BT1U 4UY2C 1ABTA 1VB0A 2H62D 1QM7A 3FEVA 1CCQA 1FSCA 1CXNA 4HQPF 1S4YA 1QKEA 5EBXA 2CTXA 2VLWA 2H62C 2CDXA 1IK8A 1HC9A 1KFHA 2L5SA 2PJYB 5DU1A 1TXAA 1CXOA 2ERAA 6EBXA 3ERAA 4XJJA 1W6BA 1COEA 2UWRA 1IDLA 1UG4A 2QJAC 5IMTD 3HH7A 3VTSA 1L4WA 2MJYA 1CB9A 1NTXA 1CVOA 3KFDI 1NXBA 2HLQA 1NYSA 2MHYA 1TXBA 1YWHA 1QKDA 1H0JA 1B41B 2QJBC 1CTXA 4OM5A 1CDTA 3EBXA 1CODA 3LAQU 1FFJA 4KSNA 2H7ZA 2CRSA 2H64C 2H7ZB 2X8BB 1IJCA 1DRSA 2J8BA 2OFSA 1G6MA 2BTXA 1RL5A 1JGKA 1ES7B 1NYUA 2ABXA 2MJ4A 4ZQYA 2K3GA 1NEAA 5DZ5A 2HLRA 2FD6U 2LCRA 1BTEA 2MUPA 1KBAA 4RUDA 2LA1A 2H64B 2H8UA 1CDQA 3BT2U 4LFTA 1CDRA 1BXPA 1LXHA 1MAHF 1CREA 1KBTA 2MFAA 4FAOC 4AEAA 1ERGA 1M9ZA 1ONJA 3U73U 4DO8A 1HAJA 2GOOC 5DO6A 1FRAA 1XT3A 1NTNA 1IDHA 1KL8A 1I02A 1REWC 1KBSA 1MR6A 1TGXA 4OM4A 1CHVS 1IKCA 2JVEA 1LSIA 2QJ9C 1JE9A 2UX2A 2GOOB 1IDIA 1KXIA 2NBTA 1LJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PLC A;  4P7U A;  3NDS A;  1RGJ A;  4EY8 B;  2L03 A;  1F8U B;  3EVS C;  1ZAD A;  1FAS A;  2MJ0 A;  1LXG A;  1F94 A;  2I9B E;  3U74 U;  1HAA A;  4BDT B;  1KC4 A;  1NOR A;  2H5F A;  2N99 A;  1HC9 B;  1TFS A;  2JQP A;  1FSS B;  2BHI A;  1CDS A;  1ERA A;  1CRF A;  1IDG A;  2MUO A;  3QB4 B;  1IQ9 A;  5IMY C;  2CCX A;  1FF4 A;  3NH7 A;  1KTZ B;  4IYE A;  3NEQ A;  4BIK B;  1PLO A;  2QC1 A;  1KS6 A;  3KFD E;  1HOY A;  2CRT A;  1KU6 B;  2PJY C;  4QTI U;  4FAO E;  1LX5 B;  1JBD A;  1V6P A;  3BT1 U;  4UY2 C;  1ABT A;  1VB0 A;  2H62 D;  1QM7 A;  3FEV A;  1CCQ A;  1FSC A;  1CXN A;  4HQP F;  1S4Y A;  1QKE A;  5EBX A;  2CTX A;  2VLW A;  2H62 C;  2CDX A;  1IK8 A;  1HC9 A;  1KFH A;  2L5S A;  2PJY B;  5DU1 A;  1TXA A;  1CXO A;  2ERA A;  6EBX A;  3ERA A;  4XJJ A;  1W6B A;  1COE A;  2UWR A;  1IDL A;  1UG4 A;  2QJA C;  5IMT D;  3HH7 A;  3VTS A;  1L4W A;  2MJY A;  1CB9 A;  1NTX A;  1CVO A;  3KFD I;  1NXB A;  2HLQ A;  1NYS A;  2MHY A;  1TXB A;  1YWH A;  1QKD A;  1H0J A;  1B41 B;  2QJB C;  1CTX A;  4OM5 A;  1CDT A;  3EBX A;  1COD A;  3LAQ U;  1FFJ A;  2H7Z A;  2CRS A;  2H64 C;  2H7Z B;  2X8B B;  1IJC A;  1DRS A;  2J8B A;  2OFS A;  1G6M A;  2BTX A;  1RL5 A;  1JGK A;  1ES7 B;  1NYU A;  2ABX A;  2MJ4 A;  4ZQY A;  2K3G A;  1NEA A;  5DZ5 A;  2HLR A;  2FD6 U;  2LCR A;  1BTE A;  2MUP A;  1KBA A;  4RUD A;  2LA1 A;  2H64 B;  2H8U A;  1CDQ A;  3BT2 U;  4LFT A;  1CDR A;  1BXP A;  1LXH A;  1MAH F;  1CRE A;  1KBT A;  2MFA A;  4FAO C;  4AEA A;  1ERG A;  1M9Z A;  1ONJ A;  3U73 U;  4DO8 A;  1HAJ A;  2GOO C;  5DO6 A;  1FRA A;  1XT3 A;  1NTN A;  1IDH A;  1KL8 A;  1I02 A;  1REW C;  1KBS A;  1MR6 A;  1TGX A;  4OM4 A;  1CHV S;  1IKC A;  2JVE A;  1LSI A;  2QJ9 C;  1JE9 A;  2UX2 A;  2GOO B;  1IDI A;  1KXI A;  2NBT A;  1LJZ A; 
#chains in the Genus database with same CATH topology
 3PLC A;  4P7U A;  3NDS A;  1RGJ A;  4EY8 B;  2L03 A;  1F8U B;  3EVS C;  1ZAD A;  1FAS A;  2MJ0 A;  1LXG A;  1F94 A;  2I9B E;  3U74 U;  1HAA A;  4BDT B;  1KC4 A;  1NOR A;  2H5F A;  2N99 A;  1HC9 B;  1TFS A;  2JQP A;  1FSS B;  2BHI A;  1CDS A;  1ERA A;  1CRF A;  1IDG A;  2MUO A;  3QB4 B;  1IQ9 A;  5IMY C;  2CCX A;  1FF4 A;  3NH7 A;  1KTZ B;  4IYE A;  3NEQ A;  4BIK B;  1PLO A;  2QC1 A;  1KS6 A;  3KFD E;  1HOY A;  2CRT A;  1KU6 B;  2PJY C;  4QTI U;  4FAO E;  1LX5 B;  1JBD A;  1V6P A;  3BT1 U;  4UY2 C;  1ABT A;  1VB0 A;  2H62 D;  1QM7 A;  3FEV A;  1CCQ A;  1FSC A;  1CXN A;  4HQP F;  1S4Y A;  1QKE A;  5EBX A;  2CTX A;  2VLW A;  2H62 C;  2CDX A;  1IK8 A;  1HC9 A;  1KFH A;  2L5S A;  2PJY B;  5DU1 A;  1TXA A;  1CXO A;  2ERA A;  6EBX A;  3ERA A;  4XJJ A;  1W6B A;  1COE A;  2UWR A;  1IDL A;  1UG4 A;  2QJA C;  5IMT D;  3HH7 A;  3VTS A;  1L4W A;  2MJY A;  1CB9 A;  1NTX A;  1CVO A;  3KFD I;  1NXB A;  2HLQ A;  1NYS A;  2MHY A;  1TXB A;  1YWH A;  1QKD A;  1H0J A;  1B41 B;  2QJB C;  1CTX A;  4OM5 A;  1CDT A;  3EBX A;  1COD A;  3LAQ U;  1FFJ A;  4KSN A;  2H7Z A;  2CRS A;  2H64 C;  2H7Z B;  2X8B B;  1IJC A;  1DRS A;  2J8B A;  2OFS A;  1G6M A;  2BTX A;  1RL5 A;  1JGK A;  1ES7 B;  1NYU A;  2ABX A;  2MJ4 A;  4ZQY A;  2K3G A;  1NEA A;  5DZ5 A;  2HLR A;  2FD6 U;  2LCR A;  1BTE A;  2MUP A;  1KBA A;  4RUD A;  2LA1 A;  2H64 B;  2H8U A;  1CDQ A;  3BT2 U;  4LFT A;  1CDR A;  1BXP A;  1LXH A;  1MAH F;  1CRE A;  1KBT A;  2MFA A;  4FAO C;  4AEA A;  1ERG A;  1M9Z A;  1ONJ A;  3U73 U;  4DO8 A;  1HAJ A;  2GOO C;  5DO6 A;  1FRA A;  1XT3 A;  1NTN A;  1IDH A;  1KL8 A;  1I02 A;  1REW C;  1KBS A;  1MR6 A;  1TGX A;  4OM4 A;  1CHV S;  1IKC A;  2JVE A;  1LSI A;  2QJ9 C;  1JE9 A;  2UX2 A;  2GOO B;  1IDI A;  1KXI A;  2NBT A;  1LJZ A; 
#chains in the Genus database with same CATH homology
 3PLC A;  4P7U A;  3NDS A;  1RGJ A;  4EY8 B;  2L03 A;  1F8U B;  3EVS C;  1ZAD A;  1FAS A;  2MJ0 A;  1LXG A;  1F94 A;  2I9B E;  3U74 U;  1HAA A;  4BDT B;  1KC4 A;  1NOR A;  2H5F A;  2N99 A;  1HC9 B;  1TFS A;  2JQP A;  1FSS B;  2BHI A;  1CDS A;  1ERA A;  1CRF A;  1IDG A;  2MUO A;  3QB4 B;  1IQ9 A;  5IMY C;  2CCX A;  1FF4 A;  3NH7 A;  1KTZ B;  4IYE A;  3NEQ A;  4BIK B;  1PLO A;  2QC1 A;  1KS6 A;  3KFD E;  1HOY A;  2CRT A;  1KU6 B;  2PJY C;  4QTI U;  4FAO E;  1LX5 B;  1JBD A;  1V6P A;  3BT1 U;  4UY2 C;  1ABT A;  1VB0 A;  2H62 D;  1QM7 A;  3FEV A;  1CCQ A;  1FSC A;  1CXN A;  4HQP F;  1S4Y A;  1QKE A;  5EBX A;  2CTX A;  2VLW A;  2H62 C;  2CDX A;  1IK8 A;  1HC9 A;  1KFH A;  2L5S A;  2PJY B;  5DU1 A;  1TXA A;  1CXO A;  2ERA A;  6EBX A;  3ERA A;  4XJJ A;  1W6B A;  1COE A;  2UWR A;  1IDL A;  1UG4 A;  2QJA C;  5IMT D;  3HH7 A;  3VTS A;  1L4W A;  2MJY A;  1CB9 A;  1NTX A;  1CVO A;  3KFD I;  1NXB A;  2HLQ A;  1NYS A;  2MHY A;  1TXB A;  1YWH A;  1QKD A;  1H0J A;  1B41 B;  2QJB C;  1CTX A;  4OM5 A;  1CDT A;  3EBX A;  1COD A;  3LAQ U;  1FFJ A;  4KSN A;  2H7Z A;  2CRS A;  2H64 C;  2H7Z B;  2X8B B;  1IJC A;  1DRS A;  2J8B A;  2OFS A;  1G6M A;  2BTX A;  1RL5 A;  1JGK A;  1ES7 B;  1NYU A;  2ABX A;  2MJ4 A;  4ZQY A;  2K3G A;  1NEA A;  5DZ5 A;  2HLR A;  2FD6 U;  2LCR A;  1BTE A;  2MUP A;  1KBA A;  4RUD A;  2LA1 A;  2H64 B;  2H8U A;  1CDQ A;  3BT2 U;  4LFT A;  1CDR A;  1BXP A;  1LXH A;  1MAH F;  1CRE A;  1KBT A;  2MFA A;  4FAO C;  4AEA A;  1ERG A;  1M9Z A;  1ONJ A;  3U73 U;  4DO8 A;  1HAJ A;  2GOO C;  5DO6 A;  1FRA A;  1XT3 A;  1NTN A;  1IDH A;  1KL8 A;  1I02 A;  1REW C;  1KBS A;  1MR6 A;  1TGX A;  4OM4 A;  1CHV S;  1IKC A;  2JVE A;  1LSI A;  2QJ9 C;  1JE9 A;  2UX2 A;  2GOO B;  1IDI A;  1KXI A;  2NBT A;  1LJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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