1RLAA

Three-dimensional structure of rat liver arginase, the binuclear manganese metalloenzyme of the urea cycle
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGNHKPETDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ARGINASE
publication title Structure of a unique binuclear manganese cluster in arginase.
pubmed doi rcsb
total genus 101
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 1996-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1rlaA00
4MYFA 4HWWA 3SKKA 1WVAA 3E8QA 3LHLA 4RHKA 3MMRA 1R1OA 2PLLA 3DJ8A 4RHMA 1WOIA 1TA1A 3GMZA 1TBHA 4GSZA 4IU5A 4IU4A 4GSMA 5CEVA 3SJTA 2CEVA 4Q41A 4Q3VA 3CEVA 1T4SA 3E6KA 4IE3A 5RLAA 1GQ6A 3E9BA 4RHLA 3E8ZA 1GQ7A 1T5GA 3RLAA 3NIOA 3NIPA 1T4TA 2ZAVA 3SL1A 1T4PA 3TH7A 4MYKA 2AEBA 1XFKA 1P8SA 2PHOA 4RHIA 4Q3UA 4IXUA 5HJAA 4Q3RA 4CEVA 1P8OA 2EIVA 3LP7A 4RHJA 3THEA 2EF5A 4MYLA 3M1RA 3MFWA 4MXRA 1P8MA 3THJA 3LP4A 4Q42A 1P8QA 4GSVA 1HQXA 1T4RA 3NIQA 4IE1A 1P8RA 3F80A 1P8PA 4IE2A 4Q3PA 4IU1A 2EF4A 1ZPGA 1TBLA 4IXVA 3PZLA 4Q3RC 4Q3SA 4ITYA 5HJ9A 1P8NA 3TF3A 4FCIA 4GWDA 4MYNA 1D3VA 1WOGA 1HQHA 4I06A 3THHA 4Q3QA 3GN0A 3KV2A 1RLAA 1TBJA 3E6VA 4FCKA 1ZPEA 4Q3TA 1WOHA 4Q40A 4GWCA 4G3HA 3MFVA 3SL0A 1WVBA 4IU0A 4RHQA 4HXQA 1T5FA 1HQ5A 2PHAA 3MJLA 1HQGA 1CEVA 2A0MA 2RLAA 4HZEA 4RLAA 1HQFA 4DZ4A 1PQ3A
chains in the Genus database with same CATH superfamily
4MYFA 1C3SA 2GH6A 4HWWA 1WVAA 3SKKA 3E8QA 3LHLA 5FCWA 4QA0A 1C3PA 3F06A 3MMRA 2VQOA 4QA4A 1R1OA 2PLLA 3DJ8A 4RHMA 3C0ZA 5EFKB 3SFHA 1WOIA 1TA1A 4QA7A 3GMZA 5G1BA 4RHKA 1TBHA 2VCGA 4GSZA 5DC8A 4IU5A 4IU4A 4GSMA 5ICNB 5CEVA 3SJTA 2CEVA 4Q41A 5G0YA 5EEMA 4Q3VA 3CEVA 1T4SA 3ZNRA 1ZZ0A 4BZ8A 3E6KA 5FUEA 3F07A 4BZ7A 4IE3A 5DC5A 4ZUNA 4QA3A 5RLAA 4BZ5A 3ZNSA 5G13A 1GQ6A 3E9BA 5G0JA 4RHLA 4CBYA 2V5XA 4QA5A 3E8ZA 3MAXA 1GQ7A 1T5GA 3RLAA 3NIOA 3NIPA 1T4TA 2ZAVA 3SL1A 2VQQA 3MZ4A 1T4PA 1ZZ1A 4MYKA 5EFJD 3TH7A 5G12A 2AEBA 1XFKA 4RN2A 3Q9CA 1P8SA 2PHOA 4RHIA 3EZTA 4CBTA 4RN0A 3RQDA 5G0IA 4Q3UA 2V5WA 4IXUA 5EEKA 5G17A 4Q3RA 5HJAA 4BZ6A 4CEVA 1P8OA 5THVA 2EIVA 3LP7A 4RHJA 4ZUQA 3THEA 2EF5A 5G1CA 4MYLA 5D1BA 3M1RA 2VQWG 3MFWA 5EEFA 5G0GA 4MXRA 1P8MA 5EEIA 3THJA 5JI5A 3EZPA 4QA6A 3LP4A 4Q42A 4BZ9A 1P8QA 5THTA 4GSVA 4QA2A 5D1CA 2VQJA 1HQXA 5IWGA 2VQVA 1T4RA 4LY1A 3NIQA 4IE1A 1P8RA 2VQMA 3F80A 1P8PA 3Q9FA 4IE2A 4ZURA 5G11A 3Q9EA 3MZ3A 4Q3PA 5DC7A 4IU1A 2EF4A 5IX0A 4RN1A 1ZPGA 5THSA 5D1DA 1TBLA 4ZUOA 1VKGA 4IXVA 4ZUPA 3Q9BA 1W22A 3PZLA 4Q3RC 4QA1A 4Q3SA 4ITYA 3C0YA 5BWZA 3EWFA 3MENA 5HJ9A 3F0RA 1P8NA 3TF3A 3MZ6A 4FCIA 5EFHA 4GWDA 4MYNA 1D3VA 1WOGA 1HQHA 4I06A 3MZ7A 3THHA 4Q3QA 1C3RA 3GN0A 3KV2A 1RLAA 1TBJA 5DC6A 1T67A 4BKXB 5G3WA 3E6VA 5EFGA 4FCKA 1ZPEA 4Q3TA 1WOHA 4Q40A 4GWCA 5EF8A 5THUA 4A69A 4G3HA 3MFVA 3SL0A 4ZUMA 5A2SA 1T64A 1WVBA 1T69A 4IU0A 4LXZA 5EFNA 5G0HA 4RHQA 3SFFA 4HXQA 4CQFA 1T5FA 1HQ5A 2PHAA 3MJLA 1ZZ3A 5G0XA 5G1AA 1HQGA 1CEVA 2A0MA 5EFBD 3C10A 5EENA 5EF7A 5G10A 2RLAA 4HZEA 4RLAA 1HQFA 4DZ4A 5LI3A 3EW8A 1PQ3A
chains in the Genus database with same CATH topology
4MYFA 4HWWA 3SKKA 1WVAA 3E8QA 3LHLA 4RHKA 3MMRA 1R1OA 2PLLA 3DJ8A 4RHMA 1WOIA 1TA1A 3GMZA 1TBHA 4GSZA 4IU5A 4IU4A 4GSMA 5CEVA 3SJTA 2CEVA 4Q41A 4Q3VA 3CEVA 1T4SA 3E6KA 4IE3A 5RLAA 1GQ6A 3E9BA 4RHLA 3E8ZA 1GQ7A 1T5GA 3RLAA 3NIOA 3NIPA 1T4TA 2ZAVA 3SL1A 1T4PA 3TH7A 4MYKA 2AEBA 1XFKA 1P8SA 2PHOA 4RHIA 4Q3UA 4IXUA 5HJAA 4Q3RA 4CEVA 1P8OA 2EIVA 3LP7A 4RHJA 3THEA 2EF5A 4MYLA 3M1RA 3MFWA 4MXRA 1P8MA 3THJA 3LP4A 4Q42A 1P8QA 4GSVA 1HQXA 1T4RA 3NIQA 4IE1A 1P8RA 3F80A 1P8PA 4IE2A 4Q3PA 4IU1A 2EF4A 1ZPGA 1TBLA 4IXVA 3PZLA 4Q3RC 4Q3SA 4ITYA 5HJ9A 1P8NA 3TF3A 4FCIA 4GWDA 4MYNA 1D3VA 1WOGA 1HQHA 4I06A 3THHA 4Q3QA 3GN0A 3KV2A 1RLAA 1TBJA 3E6VA 4FCKA 1ZPEA 4Q3TA 1WOHA 4Q40A 4GWCA 4G3HA 3MFVA 3SL0A 1WVBA 4IU0A 4RHQA 4HXQA 1T5FA 1HQ5A 2PHAA 3MJLA 1HQGA 1CEVA 2A0MA 2RLAA 4HZEA 4RLAA 1HQFA 4DZ4A 1PQ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MYF A;  4HWW A;  3SKK A;  1WVA A;  3E8Q A;  3LHL A;  4RHK A;  3MMR A;  1R1O A;  2PLL A;  3DJ8 A;  4RHM A;  1WOI A;  1TA1 A;  3GMZ A;  1TBH A;  4GSZ A;  4IU5 A;  4IU4 A;  4GSM A;  5CEV A;  3SJT A;  2CEV A;  4Q41 A;  4Q3V A;  3CEV A;  1T4S A;  3E6K A;  4IE3 A;  5RLA A;  1GQ6 A;  3E9B A;  4RHL A;  3E8Z A;  1GQ7 A;  1T5G A;  3RLA A;  3NIO A;  3NIP A;  1T4T A;  2ZAV A;  3SL1 A;  1T4P A;  3TH7 A;  4MYK A;  2AEB A;  1XFK A;  1P8S A;  2PHO A;  4RHI A;  4Q3U A;  4IXU A;  5HJA A;  4Q3R A;  4CEV A;  1P8O A;  2EIV A;  3LP7 A;  4RHJ A;  3THE A;  2EF5 A;  4MYL A;  3M1R A;  3MFW A;  4MXR A;  1P8M A;  3THJ A;  3LP4 A;  4Q42 A;  1P8Q A;  4GSV A;  1HQX A;  1T4R A;  3NIQ A;  4IE1 A;  1P8R A;  3F80 A;  1P8P A;  4IE2 A;  4Q3P A;  4IU1 A;  2EF4 A;  1ZPG A;  1TBL A;  4IXV A;  3PZL A;  4Q3R C;  4Q3S A;  4ITY A;  5HJ9 A;  1P8N A;  3TF3 A;  4FCI A;  4GWD A;  4MYN A;  1D3V A;  1WOG A;  1HQH A;  4I06 A;  3THH A;  4Q3Q A;  3GN0 A;  3KV2 A;  1RLA A;  1TBJ A;  3E6V A;  4FCK A;  1ZPE A;  4Q3T A;  1WOH A;  4Q40 A;  4GWC A;  4G3H A;  3MFV A;  3SL0 A;  1WVB A;  4IU0 A;  4RHQ A;  4HXQ A;  1T5F A;  1HQ5 A;  2PHA A;  3MJL A;  1HQG A;  1CEV A;  2A0M A;  2RLA A;  4HZE A;  4RLA A;  1HQF A;  4DZ4 A;  1PQ3 A; 
#chains in the Genus database with same CATH topology
 4MYF A;  1C3S A;  2GH6 A;  4HWW A;  1WVA A;  3SKK A;  3E8Q A;  3LHL A;  5FCW A;  4QA0 A;  1C3P A;  3F06 A;  3MMR A;  2VQO A;  4QA4 A;  1R1O A;  2PLL A;  3DJ8 A;  4RHM A;  3C0Z A;  5EFK B;  3SFH A;  1WOI A;  1TA1 A;  4QA7 A;  3GMZ A;  5G1B A;  4RHK A;  1TBH A;  2VCG A;  4GSZ A;  5DC8 A;  4IU5 A;  4IU4 A;  4GSM A;  5ICN B;  5CEV A;  3SJT A;  2CEV A;  4Q41 A;  5G0Y A;  5EEM A;  4Q3V A;  3CEV A;  1T4S A;  3ZNR A;  1ZZ0 A;  4BZ8 A;  3E6K A;  5FUE A;  3F07 A;  4BZ7 A;  4IE3 A;  5DC5 A;  4ZUN A;  4QA3 A;  5RLA A;  4BZ5 A;  3ZNS A;  5G13 A;  1GQ6 A;  3E9B A;  5G0J A;  4RHL A;  4CBY A;  2V5X A;  4QA5 A;  3E8Z A;  3MAX A;  1GQ7 A;  1T5G A;  3RLA A;  3NIO A;  3NIP A;  1T4T A;  2ZAV A;  3SL1 A;  2VQQ A;  3MZ4 A;  1T4P A;  1ZZ1 A;  4MYK A;  5EFJ D;  3TH7 A;  5G12 A;  2AEB A;  1XFK A;  4RN2 A;  3Q9C A;  1P8S A;  2PHO A;  4RHI A;  3EZT A;  4CBT A;  4RN0 A;  3RQD A;  5G0I A;  4Q3U A;  2V5W A;  4IXU A;  5EEK A;  5G17 A;  4Q3R A;  5HJA A;  4BZ6 A;  4CEV A;  1P8O A;  5THV A;  2EIV A;  3LP7 A;  4RHJ A;  4ZUQ A;  3THE A;  2EF5 A;  5G1C A;  4MYL A;  5D1B A;  3M1R A;  2VQW G;  3MFW A;  5EEF A;  5G0G A;  4MXR A;  1P8M A;  5EEI A;  3THJ A;  5JI5 A;  3EZP A;  4QA6 A;  3LP4 A;  4Q42 A;  4BZ9 A;  1P8Q A;  5THT A;  4GSV A;  4QA2 A;  5D1C A;  2VQJ A;  1HQX A;  5IWG A;  2VQV A;  1T4R A;  4LY1 A;  3NIQ A;  4IE1 A;  1P8R A;  2VQM A;  3F80 A;  1P8P A;  3Q9F A;  4IE2 A;  4ZUR A;  5G11 A;  3Q9E A;  3MZ3 A;  4Q3P A;  5DC7 A;  4IU1 A;  2EF4 A;  5IX0 A;  4RN1 A;  1ZPG A;  5THS A;  5D1D A;  1TBL A;  4ZUO A;  1VKG A;  4IXV A;  4ZUP A;  3Q9B A;  1W22 A;  3PZL A;  4Q3R C;  4QA1 A;  4Q3S A;  4ITY A;  3C0Y A;  5BWZ A;  3EWF A;  3MEN A;  5HJ9 A;  3F0R A;  1P8N A;  3TF3 A;  3MZ6 A;  4FCI A;  5EFH A;  4GWD A;  4MYN A;  1D3V A;  1WOG A;  1HQH A;  4I06 A;  3MZ7 A;  3THH A;  4Q3Q A;  1C3R A;  3GN0 A;  3KV2 A;  1RLA A;  1TBJ A;  5DC6 A;  1T67 A;  4BKX B;  5G3W A;  3E6V A;  5EFG A;  4FCK A;  1ZPE A;  4Q3T A;  1WOH A;  4Q40 A;  4GWC A;  5EF8 A;  5THU A;  4A69 A;  4G3H A;  3MFV A;  3SL0 A;  4ZUM A;  5A2S A;  1T64 A;  1WVB A;  1T69 A;  4IU0 A;  4LXZ A;  5EFN A;  5G0H A;  4RHQ A;  3SFF A;  4HXQ A;  4CQF A;  1T5F A;  1HQ5 A;  2PHA A;  3MJL A;  1ZZ3 A;  5G0X A;  5G1A A;  1HQG A;  1CEV A;  2A0M A;  5EFB D;  3C10 A;  5EEN A;  5EF7 A;  5G10 A;  2RLA A;  4HZE A;  4RLA A;  1HQF A;  4DZ4 A;  5LI3 A;  3EW8 A;  1PQ3 A; 
#chains in the Genus database with same CATH homology
 4MYF A;  4HWW A;  3SKK A;  1WVA A;  3E8Q A;  3LHL A;  4RHK A;  3MMR A;  1R1O A;  2PLL A;  3DJ8 A;  4RHM A;  1WOI A;  1TA1 A;  3GMZ A;  1TBH A;  4GSZ A;  4IU5 A;  4IU4 A;  4GSM A;  5CEV A;  3SJT A;  2CEV A;  4Q41 A;  4Q3V A;  3CEV A;  1T4S A;  3E6K A;  4IE3 A;  5RLA A;  1GQ6 A;  3E9B A;  4RHL A;  3E8Z A;  1GQ7 A;  1T5G A;  3RLA A;  3NIO A;  3NIP A;  1T4T A;  2ZAV A;  3SL1 A;  1T4P A;  3TH7 A;  4MYK A;  2AEB A;  1XFK A;  1P8S A;  2PHO A;  4RHI A;  4Q3U A;  4IXU A;  5HJA A;  4Q3R A;  4CEV A;  1P8O A;  2EIV A;  3LP7 A;  4RHJ A;  3THE A;  2EF5 A;  4MYL A;  3M1R A;  3MFW A;  4MXR A;  1P8M A;  3THJ A;  3LP4 A;  4Q42 A;  1P8Q A;  4GSV A;  1HQX A;  1T4R A;  3NIQ A;  4IE1 A;  1P8R A;  3F80 A;  1P8P A;  4IE2 A;  4Q3P A;  4IU1 A;  2EF4 A;  1ZPG A;  1TBL A;  4IXV A;  3PZL A;  4Q3R C;  4Q3S A;  4ITY A;  5HJ9 A;  1P8N A;  3TF3 A;  4FCI A;  4GWD A;  4MYN A;  1D3V A;  1WOG A;  1HQH A;  4I06 A;  3THH A;  4Q3Q A;  3GN0 A;  3KV2 A;  1RLA A;  1TBJ A;  3E6V A;  4FCK A;  1ZPE A;  4Q3T A;  1WOH A;  4Q40 A;  4GWC A;  4G3H A;  3MFV A;  3SL0 A;  1WVB A;  4IU0 A;  4RHQ A;  4HXQ A;  1T5F A;  1HQ5 A;  2PHA A;  3MJL A;  1HQG A;  1CEV A;  2A0M A;  2RLA A;  4HZE A;  4RLA A;  1HQF A;  4DZ4 A;  1PQ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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