1RMRA

Crystal structure of schistatin, a disintegrin homodimer from saw-scaled viper (echis carinatus) at 2.5 a resolution
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
64
structure length
64
Chain Sequence
NSVHPCCDPVICEPREGEHCISGPCCENCYFLNSGTICKRARGDGNQDYCTGITPDCPRNRYNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Disintegrin schistatin
publication title Crystal structure of schistatin, a disintegrin homodimer from saw-scaled viper (Echis carinatus) at 2.5 A resolution
pubmed doi rcsb
total genus 9
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2003-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00200 Disintegrin Disintegrin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 1rmrA00
1Q7JA 4RQGA 2W9UA 1MPZA 3UCIA 4M4CA 2PJIA 1N4YA 1L3XA 2MOP1 1J2LA 1RO3A 1TEJB 2LJVA 1TEJA 2M7FA 1RMRA 4R5UA 1Z1XA 2ECHA 2M75A 3G5CA 2M7HA 2W9OA 1Q7IA 2MP51 2PJGA 2PJFA 3C05B 1FVLA 3C05A 4R5RA 2W9VA 2W9WA
chains in the Genus database with same CATH superfamily
1Q7JA 4RQGA 2W9UA 1MPZA 3UCIA 4M4CA 2PJIA 1N4YA 1L3XA 2MOP1 1J2LA 1RO3A 1TEJB 2LJVA 1TEJA 2M7FA 1RMRA 4R5UA 1Z1XA 2ECHA 2M75A 3G5CA 2M7HA 2W9OA 1Q7IA 2MP51 2PJGA 2PJFA 3C05B 1FVLA 3C05A 4R5RA 2W9VA 2W9WA
chains in the Genus database with same CATH topology
1Q7JA 4RQGA 2W9UA 1MPZA 3UCIA 4M4CA 2PJIA 1N4YA 1L3XA 2MOP1 1J2LA 1RO3A 1TEJB 2LJVA 1TEJA 2M7FA 1RMRA 4R5UA 1Z1XA 2ECHA 2M75A 3G5CA 2M7HA 2W9OA 1Q7IA 2MP51 2PJGA 2PJFA 3C05B 1FVLA 3C05A 4R5RA 2W9VA 2W9WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q7J A;  4RQG A;  2W9U A;  1MPZ A;  3UCI A;  4M4C A;  2PJI A;  1N4Y A;  1L3X A;  2MOP 1;  1J2L A;  1RO3 A;  1TEJ B;  2LJV A;  1TEJ A;  2M7F A;  1RMR A;  4R5U A;  1Z1X A;  2ECH A;  2M75 A;  3G5C A;  2M7H A;  2W9O A;  1Q7I A;  2MP5 1;  2PJG A;  2PJF A;  3C05 B;  1FVL A;  3C05 A;  4R5R A;  2W9V A;  2W9W A; 
#chains in the Genus database with same CATH topology
 1Q7J A;  4RQG A;  2W9U A;  1MPZ A;  3UCI A;  4M4C A;  2PJI A;  1N4Y A;  1L3X A;  2MOP 1;  1J2L A;  1RO3 A;  1TEJ B;  2LJV A;  1TEJ A;  2M7F A;  1RMR A;  4R5U A;  1Z1X A;  2ECH A;  2M75 A;  3G5C A;  2M7H A;  2W9O A;  1Q7I A;  2MP5 1;  2PJG A;  2PJF A;  3C05 B;  1FVL A;  3C05 A;  4R5R A;  2W9V A;  2W9W A; 
#chains in the Genus database with same CATH homology
 1Q7J A;  4RQG A;  2W9U A;  1MPZ A;  3UCI A;  4M4C A;  2PJI A;  1N4Y A;  1L3X A;  2MOP 1;  1J2L A;  1RO3 A;  1TEJ B;  2LJV A;  1TEJ A;  2M7F A;  1RMR A;  4R5U A;  1Z1X A;  2ECH A;  2M75 A;  3G5C A;  2M7H A;  2W9O A;  1Q7I A;  2MP5 1;  2PJG A;  2PJF A;  3C05 B;  1FVL A;  3C05 A;  4R5R A;  2W9V A;  2W9W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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