1RMU4

Three-dimensional structures of drug-resistant mutants of human rhinovirus 14
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
publication title Three-dimensional structures of drug-resistant mutants of human rhinovirus 14.
pubmed doi rcsb
source organism Human rhinovirus 14
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1rmu400
1COV4 1POV0 1VBE4 4Q4Y4 1R094 1RUJ4 1BEV4 1RMU4 4Q4X4 1ASJ4 2X5ID 1RUG4 1VBD4 4PDWD 1NA1D 1RUD4 1RUE4 1RUF4 1RUI4 1AR74 1AR84 2HWB4 1AR64 1PIV4 1VBB4 2R074 1VBC4 1AR94 1HXS4 1EV14 1RUC4 1VBA4 1RUH4 2RM24 1OOPD 1PVC4 2R064 2R044 1HRI4 3J8F4 4GB34 1EAH4 1HRV4 1RHI4 1R084 2RMU4 3JBG4 1PO14 3JD74 4Q4W4 2RS14 1VRH4 4Q4V4 2RS54 2HWC4 1PO24 1RVF4 4RHV4 1MQTD 1D4M4 1K5MD 1AL24 2PLV4 2RR14 2RS34 1NCQD 1Z7S4 1H8TD
chains in the Genus database with same CATH superfamily
1POV0 2WS3A 4Q4Y4 1R094 4Q4X4 1XHZA 2PW9A 1RUG4 2R7FA 3P4QA 1RUD4 1RUF4 2H89A 1EV14 4GB34 3AE9A 1RUH4 2R044 1NENA 1RHI4 1R084 2H88A 2RMU4 2PYJA 3AE6A 4Q4W4 2HWC4 3AE8A 1YQ4A 4YSYA 2RR14 2WDVA 1Z7S4 1XI1A 3VR8A 5C3JA 3SFDA 3P4SA 3AE3A 3SFEA 2EX3A 1L0VA 3CIRA 3SUCA 1AR74 1AR84 2HWB4 1PIV4 4YT0A 2WDQA 2WDRA 1VBC4 1AR94 2RM24 3VRAA 3J8F4 3GQHA 3P4PA 1EAH4 4KX6A 4YSZA 1PO14 4YTNA 2WQYA 1VRH4 4Q4V4 2RS54 1XHXA 3VR9A 4YTPA 2FBWA 2PLV4 2WU2A 1VBD4 3AE5A 1HRV4 1NCQD 3FI7A 1RUJ4 1BEV4 1YQ3A 1ZOYA 3P4RA 4YXDA 4PDWD 1KFYA 1AR64 3AEAA 3AECA 2PY5A 2PZSA 2WU5A 1OOPD 3GQKA 1HRI4 1ZP0A 4YTMA 2B76A 3JBG4 2RS14 4RHV4 2PYLA 1MQTD 1D4M4 1VBB4 1RUE4 1K5MD 2RS34 2X5ID 1COV4 1VBE4 1RMU4 5C2TA 3AE7A 3AEBA 1ASJ4 1NA1D 3AEDA 1RUI4 3AE1A 3VRBA 3AEGA 3AE2A 2WP9A 2R074 1VBA4 1HXS4 1RUC4 2ACZA 1PVC4 2R064 3AEEA 3AEFA 4YSXA 3JD74 1NEKA 3AE4A 1PO24 1RVF4 1KF6A 3ABVA 1AL24 1H8TD
chains in the Genus database with same CATH topology
1COV4 1POV0 1VBE4 4Q4Y4 1R094 1RUJ4 1BEV4 1RMU4 4Q4X4 1ASJ4 2X5ID 1RUG4 1VBD4 4PDWD 1NA1D 1RUD4 1RUE4 1RUF4 1RUI4 1AR74 1AR84 2HWB4 1AR64 1PIV4 1VBB4 2R074 1VBC4 1AR94 1HXS4 1EV14 1RUC4 1VBA4 1RUH4 2RM24 1OOPD 1PVC4 2R064 2R044 1HRI4 3J8F4 4GB34 1EAH4 1HRV4 1RHI4 1R084 2RMU4 3JBG4 1PO14 3JD74 4Q4W4 2RS14 1VRH4 4Q4V4 2RS54 2HWC4 1PO24 1RVF4 4RHV4 1MQTD 1D4M4 1K5MD 1AL24 2PLV4 2RR14 2RS34 1NCQD 1Z7S4 1H8TD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1COV 4;  1POV 0;  1VBE 4;  4Q4Y 4;  1R09 4;  1RUJ 4;  1BEV 4;  1RMU 4;  4Q4X 4;  1ASJ 4;  2X5I D;  1RUG 4;  1VBD 4;  4PDW D;  1NA1 D;  1RUD 4;  1RUE 4;  1RUF 4;  1RUI 4;  1AR7 4;  1AR8 4;  2HWB 4;  1AR6 4;  1PIV 4;  1VBB 4;  2R07 4;  1VBC 4;  1AR9 4;  1HXS 4;  1EV1 4;  1RUC 4;  1VBA 4;  1RUH 4;  2RM2 4;  1OOP D;  1PVC 4;  2R06 4;  2R04 4;  1HRI 4;  3J8F 4;  4GB3 4;  1EAH 4;  1HRV 4;  1RHI 4;  1R08 4;  2RMU 4;  3JBG 4;  1PO1 4;  3JD7 4;  4Q4W 4;  2RS1 4;  1VRH 4;  4Q4V 4;  2RS5 4;  2HWC 4;  1PO2 4;  1RVF 4;  4RHV 4;  1MQT D;  1D4M 4;  1K5M D;  1AL2 4;  2PLV 4;  2RR1 4;  2RS3 4;  1NCQ D;  1Z7S 4;  1H8T D; 
#chains in the Genus database with same CATH topology
 1POV 0;  2WS3 A;  4Q4Y 4;  1R09 4;  4Q4X 4;  1XHZ A;  2PW9 A;  1RUG 4;  2R7F A;  3P4Q A;  1RUD 4;  1RUF 4;  2H89 A;  1EV1 4;  4GB3 4;  3AE9 A;  1RUH 4;  2R04 4;  1NEN A;  1RHI 4;  1R08 4;  2H88 A;  2RMU 4;  2PYJ A;  3AE6 A;  4Q4W 4;  2HWC 4;  3AE8 A;  1YQ4 A;  4YSY A;  2RR1 4;  2WDV A;  1Z7S 4;  1XI1 A;  3VR8 A;  5C3J A;  3SFD A;  3P4S A;  3AE3 A;  3SFE A;  2EX3 A;  1L0V A;  3CIR A;  3SUC A;  1AR7 4;  1AR8 4;  2HWB 4;  1PIV 4;  4YT0 A;  2WDQ A;  2WDR A;  1VBC 4;  1AR9 4;  2RM2 4;  3VRA A;  3J8F 4;  3GQH A;  3P4P A;  1EAH 4;  4KX6 A;  4YSZ A;  1PO1 4;  4YTN A;  2WQY A;  1VRH 4;  4Q4V 4;  2RS5 4;  1XHX A;  3VR9 A;  4YTP A;  2FBW A;  2PLV 4;  2WU2 A;  1VBD 4;  3AE5 A;  1HRV 4;  1NCQ D;  3FI7 A;  1RUJ 4;  1BEV 4;  1YQ3 A;  1ZOY A;  3P4R A;  4YXD A;  4PDW D;  1KFY A;  1AR6 4;  3AEA A;  3AEC A;  2PY5 A;  2PZS A;  2WU5 A;  1OOP D;  3GQK A;  1HRI 4;  1ZP0 A;  4YTM A;  2B76 A;  3JBG 4;  2RS1 4;  4RHV 4;  2PYL A;  1MQT D;  1D4M 4;  1VBB 4;  1RUE 4;  1K5M D;  2RS3 4;  2X5I D;  1COV 4;  1VBE 4;  1RMU 4;  5C2T A;  3AE7 A;  3AEB A;  1ASJ 4;  1NA1 D;  3AED A;  1RUI 4;  3AE1 A;  3VRB A;  3AEG A;  3AE2 A;  2WP9 A;  2R07 4;  1VBA 4;  1HXS 4;  1RUC 4;  2ACZ A;  1PVC 4;  2R06 4;  3AEE A;  3AEF A;  4YSX A;  3JD7 4;  1NEK A;  3AE4 A;  1PO2 4;  1RVF 4;  1KF6 A;  3ABV A;  1AL2 4;  1H8T D; 
#chains in the Genus database with same CATH homology
 1COV 4;  1POV 0;  1VBE 4;  4Q4Y 4;  1R09 4;  1RUJ 4;  1BEV 4;  1RMU 4;  4Q4X 4;  1ASJ 4;  2X5I D;  1RUG 4;  1VBD 4;  4PDW D;  1NA1 D;  1RUD 4;  1RUE 4;  1RUF 4;  1RUI 4;  1AR7 4;  1AR8 4;  2HWB 4;  1AR6 4;  1PIV 4;  1VBB 4;  2R07 4;  1VBC 4;  1AR9 4;  1HXS 4;  1EV1 4;  1RUC 4;  1VBA 4;  1RUH 4;  2RM2 4;  1OOP D;  1PVC 4;  2R06 4;  2R04 4;  1HRI 4;  3J8F 4;  4GB3 4;  1EAH 4;  1HRV 4;  1RHI 4;  1R08 4;  2RMU 4;  3JBG 4;  1PO1 4;  3JD7 4;  4Q4W 4;  2RS1 4;  1VRH 4;  4Q4V 4;  2RS5 4;  2HWC 4;  1PO2 4;  1RVF 4;  4RHV 4;  1MQT D;  1D4M 4;  1K5M D;  1AL2 4;  2PLV 4;  2RR1 4;  2RS3 4;  1NCQ D;  1Z7S 4;  1H8T D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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