The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
141
|
sequence length |
404
|
structure length |
404
|
Chain Sequence |
HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLAFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Oligosaccharide Binding to Barley {alpha}-Amylase 1
pubmed doi rcsb |
| molecule keywords |
Alpha-amylase type 1 isozyme
|
| molecule tags |
Hydrolase
|
| source organism |
Hordeum vulgare
|
| total genus |
141
|
| structure length |
404
|
| sequence length |
404
|
| ec nomenclature |
ec
3.2.1.1: Alpha-amylase. |
| pdb deposition date | 2003-12-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00128 | Alpha-amylase | Alpha amylase, catalytic domain |
| A | PF07821 | Alpha-amyl_C2 | Alpha-amylase C-terminal beta-sheet domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases |
