1RRZA

Solution structure of glgs protein from e. coli
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics,biosynthetic protein
molecule keywords Glycogen synthesis protein glgS
publication title Structure of GlgS from Escherichia coli suggests a role in protein-protein interactions.
pubmed doi rcsb
source organism Escherichia coli
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2003-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08971 GlgS Glycogen synthesis protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.20 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Glycogen synthesis protein GlgS 1rrzA00
1RRZA
chains in the Genus database with same CATH superfamily
4MUOA 4X58A 4XR5A 5C2LA 3QSAA 1KGZA 3R6CA 2BPQA 4IJ1A 1O17A 5C1RA 4GA5A 2GVQA 4YYYA 2ELCA 4M0RA 4X5DA 4F3FC 4YEKA 3QQSA 2TPTA 1GXBA 4ZOKA 5EP8A 4OWOA 4OWQA 1ZYKA 4ZOFA 5EY3A 1BRWA 4HKMA 4X5CA 4OWVA 4N8QA 3QR9A 4ZOJA 3QS8A 3TWPA 5BO3A 3H5QA 4N5VA 1UOUA 2WK6A 3UU1A 4EAFA 4GIUA 4ZTVA 1RF8B 4X5AA 4GKMA 4X59A 3R88A 1RRZA 5BO2A 4X5BA 4X5EA 1V8GA 2J0FA 1ZXYA 4GA6A 1OTPA 4N93A 4X46A 4EADA 4OWSA 4OWMA 1KHDA 2WK5A 1VQUA 5C7SA 1AZYA 4OWUA 3GBRA 1ZVWA 2DSJA 5BYTA 4GTNA 4OWNA 4GA4A 4LHMA 4YI7A 5BNEA
chains in the Genus database with same CATH topology
1RRZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RRZ A; 
#chains in the Genus database with same CATH topology
 4MUO A;  4X58 A;  4XR5 A;  5C2L A;  3QSA A;  1KGZ A;  3R6C A;  2BPQ A;  4IJ1 A;  1O17 A;  5C1R A;  4GA5 A;  2GVQ A;  4YYY A;  2ELC A;  4M0R A;  4X5D A;  4F3F C;  4YEK A;  3QQS A;  2TPT A;  1GXB A;  4ZOK A;  5EP8 A;  4OWO A;  4OWQ A;  1ZYK A;  4ZOF A;  5EY3 A;  1BRW A;  4HKM A;  4X5C A;  4OWV A;  4N8Q A;  3QR9 A;  4ZOJ A;  3QS8 A;  3TWP A;  5BO3 A;  3H5Q A;  4N5V A;  1UOU A;  2WK6 A;  3UU1 A;  4EAF A;  4GIU A;  4ZTV A;  1RF8 B;  4X5A A;  4GKM A;  4X59 A;  3R88 A;  1RRZ A;  5BO2 A;  4X5B A;  4X5E A;  1V8G A;  2J0F A;  1ZXY A;  4GA6 A;  1OTP A;  4N93 A;  4X46 A;  4EAD A;  4OWS A;  4OWM A;  1KHD A;  2WK5 A;  1VQU A;  5C7S A;  1AZY A;  4OWU A;  3GBR A;  1ZVW A;  2DSJ A;  5BYT A;  4GTN A;  4OWN A;  4GA4 A;  4LHM A;  4YI7 A;  5BNE A; 
#chains in the Genus database with same CATH homology
 1RRZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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