1RRZA

Solution structure of glgs protein from e. coli
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics,biosynthetic protein
molecule keywords Glycogen synthesis protein glgS
publication title Structure of GlgS from Escherichia coli suggests a role in protein-protein interactions.
pubmed doi rcsb
source organism Escherichia coli
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2003-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08971 GlgS Glycogen synthesis protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.20 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Glycogen synthesis protein GlgS 1rrzA00
1RRZA
chains in the Genus database with same CATH superfamily
4X58A 1ZVWA 1V8GA 4OWQA 3R6CA 1GXBA 3UU1A 4N93A 4YYYA 1AZYA 4EAFA 4LHMA 4OWOA 1UOUA 4HKMA 4OWNA 3QS8A 4GKMA 4OWSA 5C1RA 4OWVA 2WK5A 5EP8A 1RRZA 4X5EA 4XR5A 5BYTA 4ZOFA 3H5QA 2DSJA 1OTPA 4GIUA 3TWPA 4F3FC 4GA4A 2TPTA 5C7SA 4GA5A 1O17A 4M0RA 3GBRA 3QR9A 4X5CA 1KGZA 2ELCA 2WK6A 4N8QA 4ZOKA 5BO2A 2BPQA 4OWMA 4X5BA 2J0FA 4GTNA 4MUOA 4YEKA 1KHDA 4IJ1A 4X46A 1BRWA 3QQSA 4GA6A 1VQUA 4N5VA 4ZTVA 4X59A 3QSAA 4EADA 4YI7A 4OWUA 4X5AA 1RF8B 1ZXYA 5EY3A 5C2LA 3R88A 1ZYKA 5BO3A 2GVQA 5BNEA 4ZOJA 4X5DA
chains in the Genus database with same CATH topology
1RRZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RRZ A; 
#chains in the Genus database with same CATH topology
 4X58 A;  1ZVW A;  1V8G A;  4OWQ A;  3R6C A;  1GXB A;  3UU1 A;  4N93 A;  4YYY A;  1AZY A;  4EAF A;  4LHM A;  4OWO A;  1UOU A;  4HKM A;  4OWN A;  3QS8 A;  4GKM A;  4OWS A;  5C1R A;  4OWV A;  2WK5 A;  5EP8 A;  1RRZ A;  4X5E A;  4XR5 A;  5BYT A;  4ZOF A;  3H5Q A;  2DSJ A;  1OTP A;  4GIU A;  3TWP A;  4F3F C;  4GA4 A;  2TPT A;  5C7S A;  4GA5 A;  1O17 A;  4M0R A;  3GBR A;  3QR9 A;  4X5C A;  1KGZ A;  2ELC A;  2WK6 A;  4N8Q A;  4ZOK A;  5BO2 A;  2BPQ A;  4OWM A;  4X5B A;  2J0F A;  4GTN A;  4MUO A;  4YEK A;  1KHD A;  4IJ1 A;  4X46 A;  1BRW A;  3QQS A;  4GA6 A;  1VQU A;  4N5V A;  4ZTV A;  4X59 A;  3QSA A;  4EAD A;  4YI7 A;  4OWU A;  4X5A A;  1RF8 B;  1ZXY A;  5EY3 A;  5C2L A;  3R88 A;  1ZYK A;  5BO3 A;  2GVQ A;  5BNE A;  4ZOJ A;  4X5D A; 
#chains in the Genus database with same CATH homology
 1RRZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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