1RSCI

Structure of an effector induced inactivated state of ribulose bisphosphate carboxylase(slash)oxygenase: the binary complex between enzyme and xylulose bisphosphate
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
109
structure length
109
Chain Sequence
SMKTLPKERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTVSFIVHRPGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase (carbon-carbon)
molecule keywords RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN
publication title Structure of an effector-induced inactivated state of ribulose 1,5-bisphosphate carboxylase/oxygenase: the binary complex between enzyme and xylulose 1,5-bisphosphate.
pubmed doi rcsb
source organism Synechococcus elongatus
total genus 22
structure length 109
sequence length 109
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 1994-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1rscI00
1IWAB 1AUSS 1RLDS 3AXKS 1EJ7S 1IR21 1AA1C 1WDDS 2VDII 1RCXC 1UPPI 1UZHC 4F0KB 4MKVS 1UWAC 1SVDM 4F0MB 2YBVB 1RCOC 1RBLI 1RLCS 4RUBS 1RBOC 2V68I 1RXOC 2VDHI 8RUCI 1RSCI 1BWVS 1BXNI 2V69I 2V63I 4HHHS 1GK8I 3ZXWB 1UZDC 3AXMS 1IR1S 3RUBS 2V6AI 2V67I 4F0HB 1UPMC 1UW9C
chains in the Genus database with same CATH superfamily
3FPNA 1IWAB 1CJSA 1AUSS 1AD2A 3ZQJA 1I2AA 1RLDS 1ZHOA 3AXKS 5DM70 1EJ7S 1IR21 4QG3A 1AA1C 1WDDS 1MZPA 3TG8A 2VDII 4LQ4A 1RCXC 1UPPI 1UZHC 4DFCB 3U56A 4F0KB 4MKVS 1UWAC 1SVDM 4F0MB 2YBVB 1RCOC 1RBLI 1RLCS 4RUBS 1RBOC 2V68I 1U63A 1RXOC 1DWUA 2VDHI 4REOA 8RUCI 1RSCI 1BWVS 1BXNI 2V69I 4QVIA 2V63I 4HHHS 1GK8I 3ZXWB 1UZDC 3UMYA 3AXMS 1IR1S 3RUBS 2HW8A 2DFXI 2V67I 2V6AI 5DM60 4F0HB 4F9TA 3U4MA 4QGBA 2FHZA 1UPMC 3QOYA 1UW9C
chains in the Genus database with same CATH topology
1IWAB 1AUSS 1RLDS 3AXKS 1EJ7S 1IR21 1AA1C 1WDDS 2VDII 1RCXC 1UPPI 1UZHC 4F0KB 4MKVS 1UWAC 1SVDM 4F0MB 2YBVB 1RCOC 1RBLI 1RLCS 4RUBS 1RBOC 2V68I 1RXOC 2VDHI 8RUCI 1RSCI 1BWVS 1BXNI 2V69I 2V63I 4HHHS 1GK8I 3ZXWB 1UZDC 3AXMS 1IR1S 3RUBS 2V6AI 2V67I 4F0HB 1UPMC 1UW9C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IWA B;  1AUS S;  1RLD S;  3AXK S;  1EJ7 S;  1IR2 1;  1AA1 C;  1WDD S;  2VDI I;  1RCX C;  1UPP I;  1UZH C;  4F0K B;  4MKV S;  1UWA C;  1SVD M;  4F0M B;  2YBV B;  1RCO C;  1RBL I;  1RLC S;  4RUB S;  1RBO C;  2V68 I;  1RXO C;  2VDH I;  8RUC I;  1RSC I;  1BWV S;  1BXN I;  2V69 I;  2V63 I;  4HHH S;  1GK8 I;  3ZXW B;  1UZD C;  3AXM S;  1IR1 S;  3RUB S;  2V6A I;  2V67 I;  4F0H B;  1UPM C;  1UW9 C; 
#chains in the Genus database with same CATH topology
 3FPN A;  1IWA B;  1CJS A;  1AUS S;  1AD2 A;  3ZQJ A;  1I2A A;  1RLD S;  1ZHO A;  3AXK S;  5DM7 0;  1EJ7 S;  1IR2 1;  4QG3 A;  1AA1 C;  1WDD S;  1MZP A;  3TG8 A;  2VDI I;  4LQ4 A;  1RCX C;  1UPP I;  1UZH C;  4DFC B;  3U56 A;  4F0K B;  4MKV S;  1UWA C;  1SVD M;  4F0M B;  2YBV B;  1RCO C;  1RBL I;  1RLC S;  4RUB S;  1RBO C;  2V68 I;  1U63 A;  1RXO C;  1DWU A;  2VDH I;  4REO A;  8RUC I;  1RSC I;  1BWV S;  1BXN I;  2V69 I;  4QVI A;  2V63 I;  4HHH S;  1GK8 I;  3ZXW B;  1UZD C;  3UMY A;  3AXM S;  1IR1 S;  3RUB S;  2HW8 A;  2DFX I;  2V67 I;  2V6A I;  5DM6 0;  4F0H B;  4F9T A;  3U4M A;  4QGB A;  2FHZ A;  1UPM C;  3QOY A;  1UW9 C; 
#chains in the Genus database with same CATH homology
 1IWA B;  1AUS S;  1RLD S;  3AXK S;  1EJ7 S;  1IR2 1;  1AA1 C;  1WDD S;  2VDI I;  1RCX C;  1UPP I;  1UZH C;  4F0K B;  4MKV S;  1UWA C;  1SVD M;  4F0M B;  2YBV B;  1RCO C;  1RBL I;  1RLC S;  4RUB S;  1RBO C;  2V68 I;  1RXO C;  2VDH I;  8RUC I;  1RSC I;  1BWV S;  1BXN I;  2V69 I;  2V63 I;  4HHH S;  1GK8 I;  3ZXW B;  1UZD C;  3AXM S;  1IR1 S;  3RUB S;  2V6A I;  2V67 I;  4F0H B;  1UPM C;  1UW9 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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