1RU4A

Crystal structure of pectate lyase pel9a
Total Genus 157
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
400
structure length
400
Chain Sequence
ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Erwinia chrysanthemi
publication title The crystal structure of pectate lyase Pel9A from Erwinia chrysanthemi
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 157
structure length 400
sequence length 400
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ru4A00
2PYGA 3KRGA 4Z03A 3EQOA 1O8MA 2QXZA 1WMRA 4XN3A 4XQFA 4XOTA 2QY1A 4XKVA 2NTQA 2PECA 1KCCA 1O8GA 3VMVA 4OJOA 4YZAA 3WWGA 3B90A 4YZQA 1OGOX 1H80A 1DBGA 4AVZA 2VBMA 3GQ8A 2O17A 4XLHA 1O8DA 1O8EA 1O8FA 1PLUA 3UW0A 1OFMA 2NTPA 2NT9A 2VJJA 3GRHA 1O8IA 1IDJA 4YEJA 2NSTA 4XLFA 3T9GA 2INVA 1IDKA 1AIRA 3GQ9A 1OFLA 4XOPA 3VSTA 4XORA 3VSVA 1O88A 3VMWA 4W8QA 2ODLA 1VBLA 2O0VA 4MR0A 2VJIA 2QX3A 4XL9A 2PYHA 4XKWA 4U4BA 3ZSCA 1JTAA 4OJ5A 2X6YA 2O04A 4XONA 4YZ0A 1KTWA 1CZFA 4YELA 4XLCA 1RWRA 3ZPPA 5C1EA 1O8HA 1GQ8A 1BN8A 3JURA 1XG2A 2VBKA 3B8YA 2X85A 1KCDA 1JRGA 4W8TA 4XLAA 4XM3A 1O8LA 3GQAA 2Z8GA 3VSUA 4PMHA 4OJ6A 1OOCA 4OZYA 4YZXA 3SUCA 4NK6A 2NT6A 4XMYA 4NK8A 4C2LA 4OZZA 2EWEA 2NZMA 4OJLA 1RU4A 4URRA 4EW9A 1PE9A 5AMVA 1IA5A 1RMGA 1O8KA 2O0WA 4HWVA 3GQ7A 1EE6A 1BHEA 1X0CA 4XLEA 2UVEA 4MXNA 3B4NA 4W8SA 3LMWA 3EQNA 1IB4A 2VBEA 4Z05A 2UVFA 2NSPA 4XR6A 4W8RA 5C1CA 1QCXA 2NTBA 2X3HA 2IQ7A 1HG8A 2X6WA 1DBOA 1NHCA 1QJVA 4I84A 1OGMX 4XNFA 4Z06A 2O1DA 2BSPA 2INUA 1O8JA 3FY3A 1K5CA 4U49A 4XN0A 4OJPA 2X6XA 1PXZA
chains in the Genus database with same CATH superfamily
1LM1A 2B0RA 2PYGA 3KRGA 4Z03A 3EQOA 1O8MA 2QXZA 1WMRA 3PSZA 4XN3A 4YCQA 4XQFA 4XOTA 3DU1X 2QY1A 3LJYA 4OPWA 4XKVA 1OFEA 2NTQA 2PECA 1KCCA 1O8GA 3RIQA 3BH6B 2O6WA 2QZAA 3PETA 3VMVA 1TYUA 4OJOA 4YZAA 4YDTA 3WWGA 2J8IA 3B90A 4YZQA 1DABA 3TH0A 1OGOX 1H80A 1DBGA 3SY2A 4AVZA 2VBMA 3GQ8A 1QA2A 2XT4A 3NB2A 2O17A 2J8KA 4XLHA 1O8DA 1O8EA 1O8FA 1PLUA 3UW0A 5JMCB 1OFMA 2NTPA 2NT9A 2VJJA 2F3LA 3GRHA 1KQ5A 1O8IA 1HF2A 1IDJA 4YEJA 2NSTA 3NAWA 2IOUG 4XLFA 3T9GA 2INVA 1IDKA 1K8FA 1AIRA 3GQ9A 1OFLA 4XOPA 3VSTA 2XTYA 4XORA 3VSVA 1O88A 1QRBA 3VMWA 4OM9A 4W8QA 2BM7A 2ODLA 1VBLA 2O0VA 2XT2A 1TYVA 2VJIA 4MR0A 2QX3A 4JRAC 4XL9A 2BM4A 5JLVC 1TYXA 2PYHA 4XKWA 5DNSA 3LYCA 4U4BA 3ZSCA 1JTAA 4OJ5A 2X6YA 1TSPA 2O04A 3SYJA 2VFNA 4XONA 4YZ0A 1KTWA 1CZFA 4YELA 4XLCA 1RWRA 3JX8A 3ZPPA 2VFQA 5C1EA 1O8HA 1GQ8A 1BN8A 2YUHA 3JURA 1XG2A 2VBKA 3B8YA 2X85A 3SZEA 1KCDA 1JRGA 3N6ZA 4W8TA 2QYUA 4XLAA 1QQ1A 2VFMA 3H09A 1O8LA 4XM3A 3GQAA 3BH7B 3AK5A 3ML3A 1LLWA 2Z8GA 3N90A 4PMHA 4OJ6A 3VSUA 1OOCA 4OZYA 4YZXA 1QA1A 4KH3A 2BM6A 3SUCA 4NK6A 2BX6A 1EZGA 2XTXA 4YEIA 1LLZA 2NT6A 3P4GA 1OFDA 4XMYA 4NK8A 4C2LA 4OZZA 2EWEA 2NZMA 4OJLA 1RU4A 2W7ZA 4URRA 4OJPA 2G0YA 4EW9A 1PE9A 5AMVA 1IA5A 1RMGA 4V02C 1EA0A 1O8KA 2O0WA 4HWVA 1TYWA 3GQ7A 1EE6A 1K4ZA 1BHEA 1X0CA 4XLEA 4YC5A 2UVEA 2VFPA 4MXNA 3B4NA 2XC1A 4W8SA 3LMWA 1QA3A 1WXRA 3EQNA 4YFOA 3PSSA 1IB4A 2VBEA 4Z05A 2UVFA 1L1IA 2NSPA 4XR6A 2BM5A 4W8RA 5C1CA 1QCXA 2NTBA 2X3HA 2IQ7A 1HG8A 2X6WA 3SQVA 1DBOA 1NHCA 1QRCA 1QJVA 2VFOA 4I84A 1OGMX 4XNFA 4Z06A 2BSPA 2O1DA 2XTWA 2INUA 1O8JA 3FY3A 1K5CA 4U49A 4XN0A 1CLWA 2V5IA 2X6XA 1PXZA
chains in the Genus database with same CATH topology
2PYGA 3KRGA 4Z03A 3EQOA 1O8MA 2QXZA 1WMRA 4XN3A 4XQFA 4XOTA 2QY1A 4XKVA 2NTQA 2PECA 1KCCA 1O8GA 3VMVA 4OJOA 4YZAA 3WWGA 3B90A 4YZQA 1OGOX 1H80A 1DBGA 4AVZA 2VBMA 3GQ8A 2O17A 4XLHA 1O8DA 1O8EA 1O8FA 1PLUA 3UW0A 1OFMA 2NTPA 2NT9A 2VJJA 3GRHA 1O8IA 1IDJA 4YEJA 2NSTA 4XLFA 3T9GA 2INVA 1IDKA 1AIRA 3GQ9A 1OFLA 4XOPA 3VSTA 4XORA 3VSVA 1O88A 3VMWA 4W8QA 2ODLA 1VBLA 2O0VA 4MR0A 2VJIA 2QX3A 4XL9A 2PYHA 4XKWA 4U4BA 3ZSCA 1JTAA 4OJ5A 2X6YA 2O04A 4XONA 4YZ0A 1KTWA 1CZFA 4YELA 4XLCA 1RWRA 3ZPPA 5C1EA 1O8HA 1GQ8A 1BN8A 3JURA 1XG2A 2VBKA 3B8YA 2X85A 1KCDA 1JRGA 4W8TA 4XLAA 4XM3A 1O8LA 3GQAA 2Z8GA 3VSUA 4PMHA 4OJ6A 1OOCA 4OZYA 4YZXA 3SUCA 4NK6A 2NT6A 4XMYA 4NK8A 4C2LA 4OZZA 2EWEA 2NZMA 4OJLA 1RU4A 4URRA 4EW9A 1PE9A 5AMVA 1IA5A 1RMGA 1O8KA 2O0WA 4HWVA 3GQ7A 1EE6A 1BHEA 1X0CA 4XLEA 2UVEA 4MXNA 3B4NA 4W8SA 3LMWA 3EQNA 1IB4A 2VBEA 4Z05A 2UVFA 2NSPA 4XR6A 4W8RA 5C1CA 1QCXA 2NTBA 2X3HA 2IQ7A 1HG8A 2X6WA 1DBOA 1NHCA 1QJVA 4I84A 1OGMX 4XNFA 4Z06A 2O1DA 2BSPA 2INUA 1O8JA 3FY3A 1K5CA 4U49A 4XN0A 4OJPA 2X6XA 1PXZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PYG A;  3KRG A;  4Z03 A;  3EQO A;  1O8M A;  2QXZ A;  1WMR A;  4XN3 A;  4XQF A;  4XOT A;  2QY1 A;  4XKV A;  2NTQ A;  2PEC A;  1KCC A;  1O8G A;  3VMV A;  4OJO A;  4YZA A;  3WWG A;  3B90 A;  4YZQ A;  1OGO X;  1H80 A;  1DBG A;  4AVZ A;  2VBM A;  3GQ8 A;  2O17 A;  4XLH A;  1O8D A;  1O8E A;  1O8F A;  1PLU A;  3UW0 A;  1OFM A;  2NTP A;  2NT9 A;  2VJJ A;  3GRH A;  1O8I A;  1IDJ A;  4YEJ A;  2NST A;  4XLF A;  3T9G A;  2INV A;  1IDK A;  1AIR A;  3GQ9 A;  1OFL A;  4XOP A;  3VST A;  4XOR A;  3VSV A;  1O88 A;  3VMW A;  4W8Q A;  2ODL A;  1VBL A;  2O0V A;  4MR0 A;  2VJI A;  2QX3 A;  4XL9 A;  2PYH A;  4XKW A;  4U4B A;  3ZSC A;  1JTA A;  4OJ5 A;  2X6Y A;  2O04 A;  4XON A;  4YZ0 A;  1KTW A;  1CZF A;  4YEL A;  4XLC A;  1RWR A;  3ZPP A;  5C1E A;  1O8H A;  1GQ8 A;  1BN8 A;  3JUR A;  1XG2 A;  2VBK A;  3B8Y A;  2X85 A;  1KCD A;  1JRG A;  4W8T A;  4XLA A;  4XM3 A;  1O8L A;  3GQA A;  2Z8G A;  3VSU A;  4PMH A;  4OJ6 A;  1OOC A;  4OZY A;  4YZX A;  3SUC A;  4NK6 A;  2NT6 A;  4XMY A;  4NK8 A;  4C2L A;  4OZZ A;  2EWE A;  2NZM A;  4OJL A;  1RU4 A;  4URR A;  4EW9 A;  1PE9 A;  5AMV A;  1IA5 A;  1RMG A;  1O8K A;  2O0W A;  4HWV A;  3GQ7 A;  1EE6 A;  1BHE A;  1X0C A;  4XLE A;  2UVE A;  4MXN A;  3B4N A;  4W8S A;  3LMW A;  3EQN A;  1IB4 A;  2VBE A;  4Z05 A;  2UVF A;  2NSP A;  4XR6 A;  4W8R A;  5C1C A;  1QCX A;  2NTB A;  2X3H A;  2IQ7 A;  1HG8 A;  2X6W A;  1DBO A;  1NHC A;  1QJV A;  4I84 A;  1OGM X;  4XNF A;  4Z06 A;  2O1D A;  2BSP A;  2INU A;  1O8J A;  3FY3 A;  1K5C A;  4U49 A;  4XN0 A;  4OJP A;  2X6X A;  1PXZ A; 
#chains in the Genus database with same CATH topology
 1LM1 A;  2B0R A;  2PYG A;  3KRG A;  4Z03 A;  3EQO A;  1O8M A;  2QXZ A;  1WMR A;  3PSZ A;  4XN3 A;  4YCQ A;  4XQF A;  4XOT A;  3DU1 X;  2QY1 A;  3LJY A;  4OPW A;  4XKV A;  1OFE A;  2NTQ A;  2PEC A;  1KCC A;  1O8G A;  3RIQ A;  3BH6 B;  2O6W A;  2QZA A;  3PET A;  3VMV A;  1TYU A;  4OJO A;  4YZA A;  4YDT A;  3WWG A;  2J8I A;  3B90 A;  4YZQ A;  1DAB A;  3TH0 A;  1OGO X;  1H80 A;  1DBG A;  3SY2 A;  4AVZ A;  2VBM A;  3GQ8 A;  1QA2 A;  2XT4 A;  3NB2 A;  2O17 A;  2J8K A;  4XLH A;  1O8D A;  1O8E A;  1O8F A;  1PLU A;  3UW0 A;  5JMC B;  1OFM A;  2NTP A;  2NT9 A;  2VJJ A;  2F3L A;  3GRH A;  1KQ5 A;  1O8I A;  1HF2 A;  1IDJ A;  4YEJ A;  2NST A;  3NAW A;  2IOU G;  4XLF A;  3T9G A;  2INV A;  1IDK A;  1K8F A;  1AIR A;  3GQ9 A;  1OFL A;  4XOP A;  3VST A;  2XTY A;  4XOR A;  3VSV A;  1O88 A;  1QRB A;  3VMW A;  4OM9 A;  4W8Q A;  2BM7 A;  2ODL A;  1VBL A;  2O0V A;  2XT2 A;  1TYV A;  2VJI A;  4MR0 A;  2QX3 A;  4JRA C;  4XL9 A;  2BM4 A;  5JLV C;  1TYX A;  2PYH A;  4XKW A;  5DNS A;  3LYC A;  4U4B A;  3ZSC A;  1JTA A;  4OJ5 A;  2X6Y A;  1TSP A;  2O04 A;  3SYJ A;  2VFN A;  4XON A;  4YZ0 A;  1KTW A;  1CZF A;  4YEL A;  4XLC A;  1RWR A;  3JX8 A;  3ZPP A;  2VFQ A;  5C1E A;  1O8H A;  1GQ8 A;  1BN8 A;  2YUH A;  3JUR A;  1XG2 A;  2VBK A;  3B8Y A;  2X85 A;  3SZE A;  1KCD A;  1JRG A;  3N6Z A;  4W8T A;  2QYU A;  4XLA A;  1QQ1 A;  2VFM A;  3H09 A;  1O8L A;  4XM3 A;  3GQA A;  3BH7 B;  3AK5 A;  3ML3 A;  1LLW A;  2Z8G A;  3N90 A;  4PMH A;  4OJ6 A;  3VSU A;  1OOC A;  4OZY A;  4YZX A;  1QA1 A;  4KH3 A;  2BM6 A;  3SUC A;  4NK6 A;  2BX6 A;  1EZG A;  2XTX A;  4YEI A;  1LLZ A;  2NT6 A;  3P4G A;  1OFD A;  4XMY A;  4NK8 A;  4C2L A;  4OZZ A;  2EWE A;  2NZM A;  4OJL A;  1RU4 A;  2W7Z A;  4URR A;  4OJP A;  2G0Y A;  4EW9 A;  1PE9 A;  5AMV A;  1IA5 A;  1RMG A;  4V02 C;  1EA0 A;  1O8K A;  2O0W A;  4HWV A;  1TYW A;  3GQ7 A;  1EE6 A;  1K4Z A;  1BHE A;  1X0C A;  4XLE A;  4YC5 A;  2UVE A;  2VFP A;  4MXN A;  3B4N A;  2XC1 A;  4W8S A;  3LMW A;  1QA3 A;  1WXR A;  3EQN A;  4YFO A;  3PSS A;  1IB4 A;  2VBE A;  4Z05 A;  2UVF A;  1L1I A;  2NSP A;  4XR6 A;  2BM5 A;  4W8R A;  5C1C A;  1QCX A;  2NTB A;  2X3H A;  2IQ7 A;  1HG8 A;  2X6W A;  3SQV A;  1DBO A;  1NHC A;  1QRC A;  1QJV A;  2VFO A;  4I84 A;  1OGM X;  4XNF A;  4Z06 A;  2BSP A;  2O1D A;  2XTW A;  2INU A;  1O8J A;  3FY3 A;  1K5C A;  4U49 A;  4XN0 A;  1CLW A;  2V5I A;  2X6X A;  1PXZ A; 
#chains in the Genus database with same CATH homology
 2PYG A;  3KRG A;  4Z03 A;  3EQO A;  1O8M A;  2QXZ A;  1WMR A;  4XN3 A;  4XQF A;  4XOT A;  2QY1 A;  4XKV A;  2NTQ A;  2PEC A;  1KCC A;  1O8G A;  3VMV A;  4OJO A;  4YZA A;  3WWG A;  3B90 A;  4YZQ A;  1OGO X;  1H80 A;  1DBG A;  4AVZ A;  2VBM A;  3GQ8 A;  2O17 A;  4XLH A;  1O8D A;  1O8E A;  1O8F A;  1PLU A;  3UW0 A;  1OFM A;  2NTP A;  2NT9 A;  2VJJ A;  3GRH A;  1O8I A;  1IDJ A;  4YEJ A;  2NST A;  4XLF A;  3T9G A;  2INV A;  1IDK A;  1AIR A;  3GQ9 A;  1OFL A;  4XOP A;  3VST A;  4XOR A;  3VSV A;  1O88 A;  3VMW A;  4W8Q A;  2ODL A;  1VBL A;  2O0V A;  4MR0 A;  2VJI A;  2QX3 A;  4XL9 A;  2PYH A;  4XKW A;  4U4B A;  3ZSC A;  1JTA A;  4OJ5 A;  2X6Y A;  2O04 A;  4XON A;  4YZ0 A;  1KTW A;  1CZF A;  4YEL A;  4XLC A;  1RWR A;  3ZPP A;  5C1E A;  1O8H A;  1GQ8 A;  1BN8 A;  3JUR A;  1XG2 A;  2VBK A;  3B8Y A;  2X85 A;  1KCD A;  1JRG A;  4W8T A;  4XLA A;  4XM3 A;  1O8L A;  3GQA A;  2Z8G A;  3VSU A;  4PMH A;  4OJ6 A;  1OOC A;  4OZY A;  4YZX A;  3SUC A;  4NK6 A;  2NT6 A;  4XMY A;  4NK8 A;  4C2L A;  4OZZ A;  2EWE A;  2NZM A;  4OJL A;  1RU4 A;  4URR A;  4EW9 A;  1PE9 A;  5AMV A;  1IA5 A;  1RMG A;  1O8K A;  2O0W A;  4HWV A;  3GQ7 A;  1EE6 A;  1BHE A;  1X0C A;  4XLE A;  2UVE A;  4MXN A;  3B4N A;  4W8S A;  3LMW A;  3EQN A;  1IB4 A;  2VBE A;  4Z05 A;  2UVF A;  2NSP A;  4XR6 A;  4W8R A;  5C1C A;  1QCX A;  2NTB A;  2X3H A;  2IQ7 A;  1HG8 A;  2X6W A;  1DBO A;  1NHC A;  1QJV A;  4I84 A;  1OGM X;  4XNF A;  4Z06 A;  2O1D A;  2BSP A;  2INU A;  1O8J A;  3FY3 A;  1K5C A;  4U49 A;  4XN0 A;  4OJP A;  2X6X A;  1PXZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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