1RU4A

Crystal structure of pectate lyase pel9a
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
400
structure length
400
Chain Sequence
ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of pectate lyase Pel9A from Erwinia chrysanthemi
pubmed doi rcsb
molecule keywords Pectate lyase
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 157
structure length 400
sequence length 400
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ru4A00
1IDKA 1XG2A 2UVEA 3EQOA 4URRA 3WWGA 1K5CA 3GRHA 4EW9A 4U49A 1X0CA 1OGMX 4U4BA 4XMYA 2INVA 4AVZA 3VMVA 4W8SA 1IDJA 2IQ7A 4C2LA 5C1CA 4HWVA 2X6YA 4OZYA 1DBGA 2EWEA 1JTAA 4XNFA 2O0WA 1CZFA 2NT9A 4OZZA 2BSPA 4XKWA 4XL9A 3B8YA 1BHEA 2X6WA 3VSVA 4OJ5A 4XM3A 2NT6A 4XORA 4YZ0A 1O8DA 1DBOA 1O8GA 2O17A 4W8QA 4XOTA 1O8HA 1KCCA 2QY1A 3B4NA 4OJ6A 2O04A 4XLEA 4MXNA 2O0VA 2ODLA 4PMHA 2Z8GA 2QX3A 1HG8A 4OJLA 2VBMA 2NTBA 3VSUA 1WMRA 1KCDA 2X3HA 1RWRA 1KTWA 1EE6A 4OJOA 4YELA 3UW0A 2NTQA 1H80A 1PE9A 1QJVA 3VSTA 4XN0A 1OGOX 3LMWA 2PYGA 1VBLA 4W8TA 1RU4A 1OFLA 4NK6A 5AMVA 3EQNA 1BN8A 1O8JA 1IB4A 2VJJA 1JRGA 4XN3A 4XLCA 2O1DA 2NSPA 1RMGA 2PYHA 4YZAA 2VJIA 4YZQA 1NHCA 1PXZA 4XOPA 2VBEA 4XLAA 4XQFA 2VBKA 3T9GA 2NTPA 5C1EA 3FY3A 2NZMA 3ZPPA 4Z03A 1O8IA 4I84A 4XR6A 1O8EA 4MR0A 4Z05A 1O8KA 1PLUA 1QCXA 3KRGA 3GQ7A 2X85A 2PECA 3GQ8A 4W8RA 3SUCA 3JURA 1O8FA 1OFMA 3B90A 1IA5A 1O88A 4XKVA 4YEJA 4Z06A 1GQ8A 3ZSCA 1O8MA 2INUA 1OOCA 3GQAA 2UVFA 2QXZA 3VMWA 2NSTA 4NK8A 4YZXA 2X6XA 3GQ9A 4XLHA 1O8LA 4OJPA 4XLFA 4XONA 1AIRA
chains in the Genus database with same CATH superfamily
1HF2A 1IDKA 1K4ZA 1XG2A 2UVEA 2VFOA 3EQOA 1LLZA 4URRA 3WWGA 1K5CA 3GRHA 4EW9A 4U49A 5JLVC 1TYVA 1X0CA 1OGMX 4U4BA 4XMYA 2INVA 4AVZA 3VMVA 4W8SA 1IDJA 5DNSA 2IQ7A 2QZAA 4C2LA 5C1CA 2XTXA 2X6YA 4HWVA 4OZYA 1DBGA 4YFOA 4OM9A 2EWEA 1JTAA 4XNFA 3JX8A 2O0WA 2O6WA 3PSSA 1CZFA 2NT9A 4OZZA 2BSPA 4XKWA 4XL9A 3B8YA 1EZGA 1BHEA 2X6WA 3TH0A 1DABA 4YC5A 3PSZA 3VSVA 1QA3A 3ML3A 4OJ5A 2XT4A 4XM3A 2NT6A 4XORA 4YZ0A 1O8DA 5JMCB 1DBOA 1O8GA 2O17A 4W8QA 4XOTA 1O8HA 1KCCA 2QY1A 2BM4A 3B4NA 4OJ6A 2V5IA 3SY2A 2IOUG 2O04A 4XLEA 4MXNA 2O0VA 3SZEA 2ODLA 4PMHA 2Z8GA 1QRCA 2QX3A 3AK5A 1HG8A 4OJLA 2VBMA 2NTBA 3VSUA 1WMRA 1KCDA 2X3HA 1TYWA 1RWRA 1KTWA 1EE6A 4OPWA 4OJOA 4YELA 3UW0A 2NTQA 3LJYA 1H80A 1PE9A 3BH7B 1QJVA 3VSTA 1QRBA 3DU1X 1OGOX 3LMWA 4XN0A 2PYGA 2XTYA 4YDTA 1TYXA 3LYCA 1VBLA 4W8TA 2QYUA 3SQVA 1RU4A 1OFLA 2BM5A 4NK6A 5AMVA 3P4GA 3EQNA 1BN8A 1O8JA 2G0YA 2J8IA 2XTWA 1IB4A 2VJJA 1JRGA 4XN3A 4XLCA 2O1DA 2NSPA 1RMGA 2PYHA 4YZAA 2VJIA 4XLFA 2BM6A 4YZQA 1NHCA 1TYUA 4JRAC 2J8KA 1PXZA 4XOPA 1K8FA 2F3LA 2VBEA 4XLAA 2VBKA 3T9GA 3H09A 1OFEA 2NTPA 2BX6A 5C1EA 4XQFA 4YEIA 2BM7A 2NZMA 3FY3A 3ZPPA 2YUHA 4YCQA 4Z03A 1QQ1A 1O8IA 4I84A 4XR6A 1O8EA 4MR0A 4Z05A 1O8KA 1PLUA 1WXRA 1QCXA 3KRGA 2VFPA 2VFQA 3GQ7A 2X85A 2PECA 3GQ8A 3NB2A 4W8RA 3NAWA 3SUCA 3JURA 1O8FA 1KQ5A 3SYJA 4V02C 2B0RA 1OFMA 3B90A 1IA5A 1O88A 4KH3A 3N90A 4XKVA 4YEJA 4Z06A 3RIQA 1GQ8A 3ZSCA 1TSPA 1O8MA 1LM1A 2INUA 1OOCA 3GQAA 2UVFA 2QXZA 3BH6B 1CLWA 3VMWA 2NSTA 4NK8A 2VFMA 3PETA 4YZXA 1L1IA 2X6XA 1LLWA 3GQ9A 2XT2A 2VFNA 2XC1A 1OFDA 4XLHA 1QA1A 1EA0A 1O8LA 1QA2A 3N6ZA 4OJPA 2W7ZA 4XONA 1AIRA
chains in the Genus database with same CATH topology
1IDKA 1XG2A 2UVEA 3EQOA 4URRA 3WWGA 1K5CA 3GRHA 4EW9A 4U49A 1X0CA 1OGMX 4U4BA 4XMYA 2INVA 4AVZA 3VMVA 4W8SA 1IDJA 2IQ7A 4C2LA 5C1CA 4HWVA 2X6YA 4OZYA 1DBGA 2EWEA 1JTAA 4XNFA 2O0WA 1CZFA 2NT9A 4OZZA 2BSPA 4XKWA 4XL9A 3B8YA 1BHEA 2X6WA 3VSVA 4OJ5A 4XM3A 2NT6A 4XORA 4YZ0A 1O8DA 1DBOA 1O8GA 2O17A 4W8QA 4XOTA 1O8HA 1KCCA 2QY1A 3B4NA 4OJ6A 2O04A 4XLEA 4MXNA 2O0VA 2ODLA 4PMHA 2Z8GA 2QX3A 1HG8A 4OJLA 2VBMA 2NTBA 3VSUA 1WMRA 1KCDA 2X3HA 1RWRA 1KTWA 1EE6A 4OJOA 4YELA 3UW0A 2NTQA 1H80A 1PE9A 1QJVA 3VSTA 4XN0A 1OGOX 3LMWA 2PYGA 1VBLA 4W8TA 1RU4A 1OFLA 4NK6A 5AMVA 3EQNA 1BN8A 1O8JA 1IB4A 2VJJA 1JRGA 4XN3A 4XLCA 2O1DA 2NSPA 1RMGA 2PYHA 4YZAA 2VJIA 4YZQA 1NHCA 1PXZA 4XOPA 2VBEA 4XLAA 4XQFA 2VBKA 3T9GA 2NTPA 5C1EA 3FY3A 2NZMA 3ZPPA 4Z03A 1O8IA 4I84A 4XR6A 1O8EA 4MR0A 4Z05A 1O8KA 1PLUA 1QCXA 3KRGA 3GQ7A 2X85A 2PECA 3GQ8A 4W8RA 3SUCA 3JURA 1O8FA 1OFMA 3B90A 1IA5A 1O88A 4XKVA 4YEJA 4Z06A 1GQ8A 3ZSCA 1O8MA 2INUA 1OOCA 3GQAA 2UVFA 2QXZA 3VMWA 2NSTA 4NK8A 4YZXA 2X6XA 3GQ9A 4XLHA 1O8LA 4OJPA 4XLFA 4XONA 1AIRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IDK A;  1XG2 A;  2UVE A;  3EQO A;  4URR A;  3WWG A;  1K5C A;  3GRH A;  4EW9 A;  4U49 A;  1X0C A;  1OGM X;  4U4B A;  4XMY A;  2INV A;  4AVZ A;  3VMV A;  4W8S A;  1IDJ A;  2IQ7 A;  4C2L A;  5C1C A;  4HWV A;  2X6Y A;  4OZY A;  1DBG A;  2EWE A;  1JTA A;  4XNF A;  2O0W A;  1CZF A;  2NT9 A;  4OZZ A;  2BSP A;  4XKW A;  4XL9 A;  3B8Y A;  1BHE A;  2X6W A;  3VSV A;  4OJ5 A;  4XM3 A;  2NT6 A;  4XOR A;  4YZ0 A;  1O8D A;  1DBO A;  1O8G A;  2O17 A;  4W8Q A;  4XOT A;  1O8H A;  1KCC A;  2QY1 A;  3B4N A;  4OJ6 A;  2O04 A;  4XLE A;  4MXN A;  2O0V A;  2ODL A;  4PMH A;  2Z8G A;  2QX3 A;  1HG8 A;  4OJL A;  2VBM A;  2NTB A;  3VSU A;  1WMR A;  1KCD A;  2X3H A;  1RWR A;  1KTW A;  1EE6 A;  4OJO A;  4YEL A;  3UW0 A;  2NTQ A;  1H80 A;  1PE9 A;  1QJV A;  3VST A;  4XN0 A;  1OGO X;  3LMW A;  2PYG A;  1VBL A;  4W8T A;  1RU4 A;  1OFL A;  4NK6 A;  5AMV A;  3EQN A;  1BN8 A;  1O8J A;  1IB4 A;  2VJJ A;  1JRG A;  4XN3 A;  4XLC A;  2O1D A;  2NSP A;  1RMG A;  2PYH A;  4YZA A;  2VJI A;  4YZQ A;  1NHC A;  1PXZ A;  4XOP A;  2VBE A;  4XLA A;  4XQF A;  2VBK A;  3T9G A;  2NTP A;  5C1E A;  3FY3 A;  2NZM A;  3ZPP A;  4Z03 A;  1O8I A;  4I84 A;  4XR6 A;  1O8E A;  4MR0 A;  4Z05 A;  1O8K A;  1PLU A;  1QCX A;  3KRG A;  3GQ7 A;  2X85 A;  2PEC A;  3GQ8 A;  4W8R A;  3SUC A;  3JUR A;  1O8F A;  1OFM A;  3B90 A;  1IA5 A;  1O88 A;  4XKV A;  4YEJ A;  4Z06 A;  1GQ8 A;  3ZSC A;  1O8M A;  2INU A;  1OOC A;  3GQA A;  2UVF A;  2QXZ A;  3VMW A;  2NST A;  4NK8 A;  4YZX A;  2X6X A;  3GQ9 A;  4XLH A;  1O8L A;  4OJP A;  4XLF A;  4XON A;  1AIR A; 
#chains in the Genus database with same CATH topology
 1HF2 A;  1IDK A;  1K4Z A;  1XG2 A;  2UVE A;  2VFO A;  3EQO A;  1LLZ A;  4URR A;  3WWG A;  1K5C A;  3GRH A;  4EW9 A;  4U49 A;  5JLV C;  1TYV A;  1X0C A;  1OGM X;  4U4B A;  4XMY A;  2INV A;  4AVZ A;  3VMV A;  4W8S A;  1IDJ A;  5DNS A;  2IQ7 A;  2QZA A;  4C2L A;  5C1C A;  2XTX A;  2X6Y A;  4HWV A;  4OZY A;  1DBG A;  4YFO A;  4OM9 A;  2EWE A;  1JTA A;  4XNF A;  3JX8 A;  2O0W A;  2O6W A;  3PSS A;  1CZF A;  2NT9 A;  4OZZ A;  2BSP A;  4XKW A;  4XL9 A;  3B8Y A;  1EZG A;  1BHE A;  2X6W A;  3TH0 A;  1DAB A;  4YC5 A;  3PSZ A;  3VSV A;  1QA3 A;  3ML3 A;  4OJ5 A;  2XT4 A;  4XM3 A;  2NT6 A;  4XOR A;  4YZ0 A;  1O8D A;  5JMC B;  1DBO A;  1O8G A;  2O17 A;  4W8Q A;  4XOT A;  1O8H A;  1KCC A;  2QY1 A;  2BM4 A;  3B4N A;  4OJ6 A;  2V5I A;  3SY2 A;  2IOU G;  2O04 A;  4XLE A;  4MXN A;  2O0V A;  3SZE A;  2ODL A;  4PMH A;  2Z8G A;  1QRC A;  2QX3 A;  3AK5 A;  1HG8 A;  4OJL A;  2VBM A;  2NTB A;  3VSU A;  1WMR A;  1KCD A;  2X3H A;  1TYW A;  1RWR A;  1KTW A;  1EE6 A;  4OPW A;  4OJO A;  4YEL A;  3UW0 A;  2NTQ A;  3LJY A;  1H80 A;  1PE9 A;  3BH7 B;  1QJV A;  3VST A;  1QRB A;  3DU1 X;  1OGO X;  3LMW A;  4XN0 A;  2PYG A;  2XTY A;  4YDT A;  1TYX A;  3LYC A;  1VBL A;  4W8T A;  2QYU A;  3SQV A;  1RU4 A;  1OFL A;  2BM5 A;  4NK6 A;  5AMV A;  3P4G A;  3EQN A;  1BN8 A;  1O8J A;  2G0Y A;  2J8I A;  2XTW A;  1IB4 A;  2VJJ A;  1JRG A;  4XN3 A;  4XLC A;  2O1D A;  2NSP A;  1RMG A;  2PYH A;  4YZA A;  2VJI A;  4XLF A;  2BM6 A;  4YZQ A;  1NHC A;  1TYU A;  4JRA C;  2J8K A;  1PXZ A;  4XOP A;  1K8F A;  2F3L A;  2VBE A;  4XLA A;  2VBK A;  3T9G A;  3H09 A;  1OFE A;  2NTP A;  2BX6 A;  5C1E A;  4XQF A;  4YEI A;  2BM7 A;  2NZM A;  3FY3 A;  3ZPP A;  2YUH A;  4YCQ A;  4Z03 A;  1QQ1 A;  1O8I A;  4I84 A;  4XR6 A;  1O8E A;  4MR0 A;  4Z05 A;  1O8K A;  1PLU A;  1WXR A;  1QCX A;  3KRG A;  2VFP A;  2VFQ A;  3GQ7 A;  2X85 A;  2PEC A;  3GQ8 A;  3NB2 A;  4W8R A;  3NAW A;  3SUC A;  3JUR A;  1O8F A;  1KQ5 A;  3SYJ A;  4V02 C;  2B0R A;  1OFM A;  3B90 A;  1IA5 A;  1O88 A;  4KH3 A;  3N90 A;  4XKV A;  4YEJ A;  4Z06 A;  3RIQ A;  1GQ8 A;  3ZSC A;  1TSP A;  1O8M A;  1LM1 A;  2INU A;  1OOC A;  3GQA A;  2UVF A;  2QXZ A;  3BH6 B;  1CLW A;  3VMW A;  2NST A;  4NK8 A;  2VFM A;  3PET A;  4YZX A;  1L1I A;  2X6X A;  1LLW A;  3GQ9 A;  2XT2 A;  2VFN A;  2XC1 A;  1OFD A;  4XLH A;  1QA1 A;  1EA0 A;  1O8L A;  1QA2 A;  3N6Z A;  4OJP A;  2W7Z A;  4XON A;  1AIR A; 
#chains in the Genus database with same CATH homology
 1IDK A;  1XG2 A;  2UVE A;  3EQO A;  4URR A;  3WWG A;  1K5C A;  3GRH A;  4EW9 A;  4U49 A;  1X0C A;  1OGM X;  4U4B A;  4XMY A;  2INV A;  4AVZ A;  3VMV A;  4W8S A;  1IDJ A;  2IQ7 A;  4C2L A;  5C1C A;  4HWV A;  2X6Y A;  4OZY A;  1DBG A;  2EWE A;  1JTA A;  4XNF A;  2O0W A;  1CZF A;  2NT9 A;  4OZZ A;  2BSP A;  4XKW A;  4XL9 A;  3B8Y A;  1BHE A;  2X6W A;  3VSV A;  4OJ5 A;  4XM3 A;  2NT6 A;  4XOR A;  4YZ0 A;  1O8D A;  1DBO A;  1O8G A;  2O17 A;  4W8Q A;  4XOT A;  1O8H A;  1KCC A;  2QY1 A;  3B4N A;  4OJ6 A;  2O04 A;  4XLE A;  4MXN A;  2O0V A;  2ODL A;  4PMH A;  2Z8G A;  2QX3 A;  1HG8 A;  4OJL A;  2VBM A;  2NTB A;  3VSU A;  1WMR A;  1KCD A;  2X3H A;  1RWR A;  1KTW A;  1EE6 A;  4OJO A;  4YEL A;  3UW0 A;  2NTQ A;  1H80 A;  1PE9 A;  1QJV A;  3VST A;  4XN0 A;  1OGO X;  3LMW A;  2PYG A;  1VBL A;  4W8T A;  1RU4 A;  1OFL A;  4NK6 A;  5AMV A;  3EQN A;  1BN8 A;  1O8J A;  1IB4 A;  2VJJ A;  1JRG A;  4XN3 A;  4XLC A;  2O1D A;  2NSP A;  1RMG A;  2PYH A;  4YZA A;  2VJI A;  4YZQ A;  1NHC A;  1PXZ A;  4XOP A;  2VBE A;  4XLA A;  4XQF A;  2VBK A;  3T9G A;  2NTP A;  5C1E A;  3FY3 A;  2NZM A;  3ZPP A;  4Z03 A;  1O8I A;  4I84 A;  4XR6 A;  1O8E A;  4MR0 A;  4Z05 A;  1O8K A;  1PLU A;  1QCX A;  3KRG A;  3GQ7 A;  2X85 A;  2PEC A;  3GQ8 A;  4W8R A;  3SUC A;  3JUR A;  1O8F A;  1OFM A;  3B90 A;  1IA5 A;  1O88 A;  4XKV A;  4YEJ A;  4Z06 A;  1GQ8 A;  3ZSC A;  1O8M A;  2INU A;  1OOC A;  3GQA A;  2UVF A;  2QXZ A;  3VMW A;  2NST A;  4NK8 A;  4YZX A;  2X6X A;  3GQ9 A;  4XLH A;  1O8L A;  4OJP A;  4XLF A;  4XON A;  1AIR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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