1RU4A

Crystal structure of pectate lyase pel9a
Total Genus 157
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
400
structure length
400
Chain Sequence
ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of pectate lyase Pel9A from Erwinia chrysanthemi
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
molecule keywords Pectate lyase
total genus 157
structure length 400
sequence length 400
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ru4A00
1HG8A 2O17A 1JRGA 4OJPA 3KRGA 1K5CA 3SUCA 3VSUA 4XKVA 4NK8A 3UW0A 4YZAA 2X6YA 4XN3A 4Z05A 3B90A 1KTWA 1IB4A 2IQ7A 2O1DA 5C1EA 4XNFA 3VMVA 4YZQA 4XMYA 1KCCA 2INUA 3JURA 1EE6A 1OOCA 3WWGA 2VBKA 3LMWA 4XOPA 4XQFA 1CZFA 4YZXA 4YZ0A 1NHCA 1OFMA 4Z06A 4XOTA 1O8FA 2QY1A 3ZSCA 3FY3A 4Z03A 4NK6A 1O8MA 4AVZA 2PYGA 3GQAA 4W8TA 2EWEA 4OJOA 2NZMA 1OGOX 1JTAA 3VSVA 4W8RA 2NTPA 1AIRA 4OZZA 2QX3A 1KCDA 3B8YA 2INVA 4I84A 1RU4A 1O8EA 1QCXA 2BSPA 4MXNA 4OJLA 2VBMA 1IA5A 1PLUA 2QXZA 3VMWA 1BHEA 2X6XA 2O0VA 4W8SA 1H80A 1O88A 2X6WA 1OFLA 3GQ9A 4W8QA 3GQ8A 2ODLA 2VJJA 1RMGA 3EQOA 4XLHA 1QJVA 2X85A 4URRA 1O8HA 3B4NA 3T9GA 1WMRA 1PXZA 2NSPA 4OJ6A 1PE9A 4XLAA 3EQNA 2NTQA 3VSTA 2UVFA 4C2LA 4XR6A 1DBGA 4EW9A 2NSTA 2NT9A 4HWVA 1BN8A 1IDKA 4XLFA 4U49A 3ZPPA 4XL9A 1VBLA 4XN0A 4YEJA 1RWRA 2VBEA 1O8JA 2VJIA 4XKWA 4XM3A 1O8GA 1O8IA 3GQ7A 5AMVA 1GQ8A 2PYHA 1DBOA 1O8DA 1XG2A 1X0CA 2PECA 1OGMX 4XORA 2NT6A 4XLEA 1O8KA 1IDJA 2X3HA 4MR0A 2O0WA 4XONA 2Z8GA 2NTBA 4YELA 2UVEA 5C1CA 4XLCA 2O04A 4OZYA 4U4BA 4OJ5A 4PMHA 3GRHA 1O8LA
chains in the Genus database with same CATH superfamily
1HG8A 2O17A 1JRGA 1TYUA 4OJPA 3KRGA 3ML3A 1K5CA 3SUCA 3VSUA 4XKVA 4NK8A 2BM7A 2XTYA 3UW0A 4YZAA 2X6YA 4XN3A 4Z05A 3B90A 3RIQA 1KTWA 1CLWA 2IQ7A 3BH6B 1IB4A 2O1DA 1QA1A 1QQ1A 2BM6A 4XNFA 5C1EA 3VMVA 4YZQA 4XMYA 1EZGA 1KCCA 2INUA 3JURA 1LLWA 1TYWA 3N6ZA 1QA2A 1EE6A 1OOCA 2BM4A 2BX6A 3SY2A 3WWGA 2V5IA 2F3LA 2VBKA 3LMWA 4XOPA 4YDTA 4YEIA 2G0YA 2B0RA 4XQFA 4V02C 4YCQA 2VFQA 1CZFA 4YZXA 3PETA 4YZ0A 1NHCA 1OFMA 4Z06A 4XOTA 1O8FA 2QY1A 1EA0A 3ZSCA 3FY3A 4Z03A 3AK5A 4NK6A 1O8MA 4AVZA 3DU1X 2BM5A 2PYGA 3GQAA 4W8TA 2EWEA 4OJOA 3LYCA 3PSZA 2NZMA 1OGOX 3TH0A 1JTAA 3P4GA 4YFOA 3VSVA 2XT2A 4W8RA 2NTPA 1AIRA 4KH3A 2QX3A 4OZZA 1KCDA 2QYUA 3B8YA 2INVA 4I84A 1RU4A 3H09A 2J8IA 1O8EA 1QCXA 1LM1A 2BSPA 4MXNA 4OJLA 2VBMA 1IA5A 1PLUA 2QXZA 3VMWA 1DABA 1BHEA 2X6XA 2O0VA 4W8SA 1H80A 1O88A 2X6WA 1OFLA 1OFDA 3GQ9A 4W8QA 3GQ8A 2XT4A 2ODLA 2VJJA 1RMGA 3EQOA 4XLHA 1QJVA 4OPWA 2X85A 3PSSA 4URRA 1O8HA 2O6WA 2VFOA 3B4NA 3T9GA 1WMRA 1PXZA 2NSPA 4OJ6A 1PE9A 1QRCA 1TYXA 4XLAA 3EQNA 2NTQA 3VSTA 2UVFA 4C2LA 4XR6A 1DBGA 3SYJA 4EW9A 2NSTA 3BH7B 1OFEA 2NT9A 2VFMA 4HWVA 1BN8A 1IDKA 1TSPA 4JRAC 2W7ZA 4OM9A 4U49A 4XLFA 1WXRA 3ZPPA 3NB2A 2XC1A 4XL9A 1K8FA 1VBLA 1L1IA 4XN0A 2J8KA 4YEJA 1RWRA 2VBEA 1O8JA 2VJIA 3NAWA 4XKWA 1O8GA 1O8IA 3GQ7A 4XM3A 5AMVA 1LLZA 1GQ8A 2PYHA 5DNSA 1DBOA 1O8DA 1XG2A 1X0CA 2PECA 1OGMX 2XTXA 1HF2A 1K4ZA 4XORA 2IOUG 2NT6A 4XLEA 1TYVA 1KQ5A 3SQVA 1QRBA 1O8KA 1IDJA 2X3HA 2YUHA 2O0WA 2VFNA 3JX8A 4MR0A 4XONA 3LJYA 3SZEA 2Z8GA 2NTBA 4YC5A 4YELA 2UVEA 5JLVC 2QZAA 3N90A 4XLCA 5C1CA 5JMCB 2O04A 2XTWA 4OZYA 4U4BA 4OJ5A 1QA3A 4PMHA 3GRHA 2VFPA 1O8LA
chains in the Genus database with same CATH topology
1HG8A 2O17A 1JRGA 4OJPA 3KRGA 1K5CA 3SUCA 3VSUA 4XKVA 4NK8A 3UW0A 4YZAA 2X6YA 4XN3A 4Z05A 3B90A 1KTWA 1IB4A 2IQ7A 2O1DA 5C1EA 4XNFA 3VMVA 4YZQA 4XMYA 1KCCA 2INUA 3JURA 1EE6A 1OOCA 3WWGA 2VBKA 3LMWA 4XOPA 4XQFA 1CZFA 4YZXA 4YZ0A 1NHCA 1OFMA 4Z06A 4XOTA 1O8FA 2QY1A 3ZSCA 3FY3A 4Z03A 4NK6A 1O8MA 4AVZA 2PYGA 3GQAA 4W8TA 2EWEA 4OJOA 2NZMA 1OGOX 1JTAA 3VSVA 4W8RA 2NTPA 1AIRA 4OZZA 2QX3A 1KCDA 3B8YA 2INVA 4I84A 1RU4A 1O8EA 1QCXA 2BSPA 4MXNA 4OJLA 2VBMA 1IA5A 1PLUA 2QXZA 3VMWA 1BHEA 2X6XA 2O0VA 4W8SA 1H80A 1O88A 2X6WA 1OFLA 3GQ9A 4W8QA 3GQ8A 2ODLA 2VJJA 1RMGA 3EQOA 4XLHA 1QJVA 2X85A 4URRA 1O8HA 3B4NA 3T9GA 1WMRA 1PXZA 2NSPA 4OJ6A 1PE9A 4XLAA 3EQNA 2NTQA 3VSTA 2UVFA 4C2LA 4XR6A 1DBGA 4EW9A 2NSTA 2NT9A 4HWVA 1BN8A 1IDKA 4XLFA 4U49A 3ZPPA 4XL9A 1VBLA 4XN0A 4YEJA 1RWRA 2VBEA 1O8JA 2VJIA 4XKWA 4XM3A 1O8GA 1O8IA 3GQ7A 5AMVA 1GQ8A 2PYHA 1DBOA 1O8DA 1XG2A 1X0CA 2PECA 1OGMX 4XORA 2NT6A 4XLEA 1O8KA 1IDJA 2X3HA 4MR0A 2O0WA 4XONA 2Z8GA 2NTBA 4YELA 2UVEA 5C1CA 4XLCA 2O04A 4OZYA 4U4BA 4OJ5A 4PMHA 3GRHA 1O8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HG8 A;  2O17 A;  1JRG A;  4OJP A;  3KRG A;  1K5C A;  3SUC A;  3VSU A;  4XKV A;  4NK8 A;  3UW0 A;  4YZA A;  2X6Y A;  4XN3 A;  4Z05 A;  3B90 A;  1KTW A;  1IB4 A;  2IQ7 A;  2O1D A;  5C1E A;  4XNF A;  3VMV A;  4YZQ A;  4XMY A;  1KCC A;  2INU A;  3JUR A;  1EE6 A;  1OOC A;  3WWG A;  2VBK A;  3LMW A;  4XOP A;  4XQF A;  1CZF A;  4YZX A;  4YZ0 A;  1NHC A;  1OFM A;  4Z06 A;  4XOT A;  1O8F A;  2QY1 A;  3ZSC A;  3FY3 A;  4Z03 A;  4NK6 A;  1O8M A;  4AVZ A;  2PYG A;  3GQA A;  4W8T A;  2EWE A;  4OJO A;  2NZM A;  1OGO X;  1JTA A;  3VSV A;  4W8R A;  2NTP A;  1AIR A;  4OZZ A;  2QX3 A;  1KCD A;  3B8Y A;  2INV A;  4I84 A;  1RU4 A;  1O8E A;  1QCX A;  2BSP A;  4MXN A;  4OJL A;  2VBM A;  1IA5 A;  1PLU A;  2QXZ A;  3VMW A;  1BHE A;  2X6X A;  2O0V A;  4W8S A;  1H80 A;  1O88 A;  2X6W A;  1OFL A;  3GQ9 A;  4W8Q A;  3GQ8 A;  2ODL A;  2VJJ A;  1RMG A;  3EQO A;  4XLH A;  1QJV A;  2X85 A;  4URR A;  1O8H A;  3B4N A;  3T9G A;  1WMR A;  1PXZ A;  2NSP A;  4OJ6 A;  1PE9 A;  4XLA A;  3EQN A;  2NTQ A;  3VST A;  2UVF A;  4C2L A;  4XR6 A;  1DBG A;  4EW9 A;  2NST A;  2NT9 A;  4HWV A;  1BN8 A;  1IDK A;  4XLF A;  4U49 A;  3ZPP A;  4XL9 A;  1VBL A;  4XN0 A;  4YEJ A;  1RWR A;  2VBE A;  1O8J A;  2VJI A;  4XKW A;  4XM3 A;  1O8G A;  1O8I A;  3GQ7 A;  5AMV A;  1GQ8 A;  2PYH A;  1DBO A;  1O8D A;  1XG2 A;  1X0C A;  2PEC A;  1OGM X;  4XOR A;  2NT6 A;  4XLE A;  1O8K A;  1IDJ A;  2X3H A;  4MR0 A;  2O0W A;  4XON A;  2Z8G A;  2NTB A;  4YEL A;  2UVE A;  5C1C A;  4XLC A;  2O04 A;  4OZY A;  4U4B A;  4OJ5 A;  4PMH A;  3GRH A;  1O8L A; 
#chains in the Genus database with same CATH topology
 1HG8 A;  2O17 A;  1JRG A;  1TYU A;  4OJP A;  3KRG A;  3ML3 A;  1K5C A;  3SUC A;  3VSU A;  4XKV A;  4NK8 A;  2BM7 A;  2XTY A;  3UW0 A;  4YZA A;  2X6Y A;  4XN3 A;  4Z05 A;  3B90 A;  3RIQ A;  1KTW A;  1CLW A;  2IQ7 A;  3BH6 B;  1IB4 A;  2O1D A;  1QA1 A;  1QQ1 A;  2BM6 A;  4XNF A;  5C1E A;  3VMV A;  4YZQ A;  4XMY A;  1EZG A;  1KCC A;  2INU A;  3JUR A;  1LLW A;  1TYW A;  3N6Z A;  1QA2 A;  1EE6 A;  1OOC A;  2BM4 A;  2BX6 A;  3SY2 A;  3WWG A;  2V5I A;  2F3L A;  2VBK A;  3LMW A;  4XOP A;  4YDT A;  4YEI A;  2G0Y A;  2B0R A;  4XQF A;  4V02 C;  4YCQ A;  2VFQ A;  1CZF A;  4YZX A;  3PET A;  4YZ0 A;  1NHC A;  1OFM A;  4Z06 A;  4XOT A;  1O8F A;  2QY1 A;  1EA0 A;  3ZSC A;  3FY3 A;  4Z03 A;  3AK5 A;  4NK6 A;  1O8M A;  4AVZ A;  3DU1 X;  2BM5 A;  2PYG A;  3GQA A;  4W8T A;  2EWE A;  4OJO A;  3LYC A;  3PSZ A;  2NZM A;  1OGO X;  3TH0 A;  1JTA A;  3P4G A;  4YFO A;  3VSV A;  2XT2 A;  4W8R A;  2NTP A;  1AIR A;  4KH3 A;  2QX3 A;  4OZZ A;  1KCD A;  2QYU A;  3B8Y A;  2INV A;  4I84 A;  1RU4 A;  3H09 A;  2J8I A;  1O8E A;  1QCX A;  1LM1 A;  2BSP A;  4MXN A;  4OJL A;  2VBM A;  1IA5 A;  1PLU A;  2QXZ A;  3VMW A;  1DAB A;  1BHE A;  2X6X A;  2O0V A;  4W8S A;  1H80 A;  1O88 A;  2X6W A;  1OFL A;  1OFD A;  3GQ9 A;  4W8Q A;  3GQ8 A;  2XT4 A;  2ODL A;  2VJJ A;  1RMG A;  3EQO A;  4XLH A;  1QJV A;  4OPW A;  2X85 A;  3PSS A;  4URR A;  1O8H A;  2O6W A;  2VFO A;  3B4N A;  3T9G A;  1WMR A;  1PXZ A;  2NSP A;  4OJ6 A;  1PE9 A;  1QRC A;  1TYX A;  4XLA A;  3EQN A;  2NTQ A;  3VST A;  2UVF A;  4C2L A;  4XR6 A;  1DBG A;  3SYJ A;  4EW9 A;  2NST A;  3BH7 B;  1OFE A;  2NT9 A;  2VFM A;  4HWV A;  1BN8 A;  1IDK A;  1TSP A;  4JRA C;  2W7Z A;  4OM9 A;  4U49 A;  4XLF A;  1WXR A;  3ZPP A;  3NB2 A;  2XC1 A;  4XL9 A;  1K8F A;  1VBL A;  1L1I A;  4XN0 A;  2J8K A;  4YEJ A;  1RWR A;  2VBE A;  1O8J A;  2VJI A;  3NAW A;  4XKW A;  1O8G A;  1O8I A;  3GQ7 A;  4XM3 A;  5AMV A;  1LLZ A;  1GQ8 A;  2PYH A;  5DNS A;  1DBO A;  1O8D A;  1XG2 A;  1X0C A;  2PEC A;  1OGM X;  2XTX A;  1HF2 A;  1K4Z A;  4XOR A;  2IOU G;  2NT6 A;  4XLE A;  1TYV A;  1KQ5 A;  3SQV A;  1QRB A;  1O8K A;  1IDJ A;  2X3H A;  2YUH A;  2O0W A;  2VFN A;  3JX8 A;  4MR0 A;  4XON A;  3LJY A;  3SZE A;  2Z8G A;  2NTB A;  4YC5 A;  4YEL A;  2UVE A;  5JLV C;  2QZA A;  3N90 A;  4XLC A;  5C1C A;  5JMC B;  2O04 A;  2XTW A;  4OZY A;  4U4B A;  4OJ5 A;  1QA3 A;  4PMH A;  3GRH A;  2VFP A;  1O8L A; 
#chains in the Genus database with same CATH homology
 1HG8 A;  2O17 A;  1JRG A;  4OJP A;  3KRG A;  1K5C A;  3SUC A;  3VSU A;  4XKV A;  4NK8 A;  3UW0 A;  4YZA A;  2X6Y A;  4XN3 A;  4Z05 A;  3B90 A;  1KTW A;  1IB4 A;  2IQ7 A;  2O1D A;  5C1E A;  4XNF A;  3VMV A;  4YZQ A;  4XMY A;  1KCC A;  2INU A;  3JUR A;  1EE6 A;  1OOC A;  3WWG A;  2VBK A;  3LMW A;  4XOP A;  4XQF A;  1CZF A;  4YZX A;  4YZ0 A;  1NHC A;  1OFM A;  4Z06 A;  4XOT A;  1O8F A;  2QY1 A;  3ZSC A;  3FY3 A;  4Z03 A;  4NK6 A;  1O8M A;  4AVZ A;  2PYG A;  3GQA A;  4W8T A;  2EWE A;  4OJO A;  2NZM A;  1OGO X;  1JTA A;  3VSV A;  4W8R A;  2NTP A;  1AIR A;  4OZZ A;  2QX3 A;  1KCD A;  3B8Y A;  2INV A;  4I84 A;  1RU4 A;  1O8E A;  1QCX A;  2BSP A;  4MXN A;  4OJL A;  2VBM A;  1IA5 A;  1PLU A;  2QXZ A;  3VMW A;  1BHE A;  2X6X A;  2O0V A;  4W8S A;  1H80 A;  1O88 A;  2X6W A;  1OFL A;  3GQ9 A;  4W8Q A;  3GQ8 A;  2ODL A;  2VJJ A;  1RMG A;  3EQO A;  4XLH A;  1QJV A;  2X85 A;  4URR A;  1O8H A;  3B4N A;  3T9G A;  1WMR A;  1PXZ A;  2NSP A;  4OJ6 A;  1PE9 A;  4XLA A;  3EQN A;  2NTQ A;  3VST A;  2UVF A;  4C2L A;  4XR6 A;  1DBG A;  4EW9 A;  2NST A;  2NT9 A;  4HWV A;  1BN8 A;  1IDK A;  4XLF A;  4U49 A;  3ZPP A;  4XL9 A;  1VBL A;  4XN0 A;  4YEJ A;  1RWR A;  2VBE A;  1O8J A;  2VJI A;  4XKW A;  4XM3 A;  1O8G A;  1O8I A;  3GQ7 A;  5AMV A;  1GQ8 A;  2PYH A;  1DBO A;  1O8D A;  1XG2 A;  1X0C A;  2PEC A;  1OGM X;  4XOR A;  2NT6 A;  4XLE A;  1O8K A;  1IDJ A;  2X3H A;  4MR0 A;  2O0W A;  4XON A;  2Z8G A;  2NTB A;  4YEL A;  2UVE A;  5C1C A;  4XLC A;  2O04 A;  4OZY A;  4U4B A;  4OJ5 A;  4PMH A;  3GRH A;  1O8L A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...