1RU4A

Crystal structure of pectate lyase pel9a
Total Genus 157
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
400
structure length
400
Chain Sequence
ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title The crystal structure of pectate lyase Pel9A from Erwinia chrysanthemi
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 157
structure length 400
sequence length 400
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ru4A00
1VBLA 2UVEA 4XL9A 4AVZA 2NZMA 2O0WA 1IB4A 4YELA 1O8LA 1O8HA 1O8FA 3EQNA 1EE6A 1BHEA 4XORA 4W8TA 1GQ8A 4URRA 1RMGA 2NTBA 4U49A 4Z05A 2NT9A 2PYHA 3ZPPA 4XNFA 4EW9A 3SUCA 2VBMA 3JURA 2PYGA 4MXNA 1IDJA 4PMHA 2O1DA 4MR0A 4XLFA 4XN3A 1X0CA 1OGMX 1DBGA 2X3HA 2Z8GA 2X85A 3T9GA 4XLCA 1QCXA 4XKVA 1XG2A 2ODLA 4YZ0A 1BN8A 1OFLA 2VBKA 3GRHA 2INVA 2VJIA 2O17A 4OZZA 2VJJA 4Z03A 3VSUA 3ZSCA 1JRGA 4YZQA 4C2LA 3UW0A 4OJLA 2BSPA 3B90A 5C1CA 1OOCA 1CZFA 1OGOX 4XKWA 2UVFA 1RU4A 1OFMA 4XM3A 2EWEA 1O8JA 4XLEA 2INUA 4I84A 4OJ5A 1WMRA 4NK8A 2NSPA 3WWGA 4XN0A 4XLAA 1O88A 1O8GA 4XONA 4OJPA 4XOTA 1K5CA 3GQ9A 4YEJA 5C1EA 4W8QA 1KCDA 1RWRA 3GQ8A 1PXZA 3VMVA 3VMWA 1O8DA 2NT6A 4OJ6A 2QX3A 4U4BA 4OJOA 4XMYA 1KTWA 2O04A 1PLUA 2QXZA 2VBEA 4XQFA 1QJVA 4XR6A 1O8IA 1O8MA 5AMVA 1H80A 4OZYA 1PE9A 4W8RA 1IA5A 1KCCA 1HG8A 3GQ7A 4W8SA 4XLHA 3B4NA 2QY1A 1IDKA 3VSVA 3EQOA 4YZXA 3FY3A 3B8YA 4Z06A 1JTAA 3GQAA 2X6WA 4HWVA 4NK6A 1O8KA 1AIRA 1DBOA 4XOPA 1NHCA 2IQ7A 2X6YA 3VSTA 4YZAA 2NTPA 2O0VA 2NTQA 2PECA 1O8EA 2X6XA 2NSTA 3LMWA 3KRGA
chains in the Genus database with same CATH superfamily
1VBLA 1HF2A 3JX8A 1TSPA 1OFDA 2UVEA 4XL9A 4AVZA 4OM9A 2NZMA 2O0WA 3N90A 1IB4A 1CLWA 4YELA 1O8LA 1LLZA 1O8HA 5JLVC 1O8FA 3EQNA 1QA1A 1EE6A 3P4GA 1BHEA 4JRAC 1LLWA 4XORA 3LJYA 4W8TA 2BM6A 1GQ8A 4URRA 3DU1X 1RMGA 2NTBA 4U49A 4YFOA 4Z05A 4YC5A 2NT9A 4YDTA 2PYHA 3ZPPA 4XNFA 4EW9A 3SUCA 3AK5A 3PETA 2VBMA 2XTYA 3JURA 3PSZA 2VFMA 2PYGA 1DABA 2J8IA 4MXNA 2VFQA 1IDJA 4PMHA 2O1DA 2J8KA 4MR0A 4XLFA 4XN3A 1L1IA 1X0CA 1OGMX 1DBGA 2X3HA 2Z8GA 2X85A 1LM1A 3T9GA 4XLCA 1QCXA 4XKVA 1XG2A 3NAWA 1EA0A 1TYXA 2ODLA 1BN8A 1OFLA 2VBKA 3GRHA 4OPWA 4YZ0A 2INVA 2VJIA 1WXRA 3NB2A 2O17A 3TH0A 4OZZA 2VJJA 4V02C 4Z03A 3VSUA 1JRGA 2XTWA 4YZQA 3ZSCA 4C2LA 3UW0A 4OJLA 1K8FA 2BSPA 3B90A 5C1CA 1OOCA 1QRCA 1CZFA 1OGOX 2XT4A 1RU4A 2UVFA 4XKWA 1OFMA 2W7ZA 4XM3A 2VFOA 4YEIA 2EWEA 4YCQA 1O8JA 4XLEA 2INUA 2G0YA 4I84A 1WMRA 4NK8A 2NSPA 4OJ5A 1QQ1A 4XN0A 3WWGA 5DNSA 2V5IA 1O88A 1O8GA 4XLAA 4XONA 4OJPA 4XOTA 1KQ5A 1K5CA 3GQ9A 4YEJA 2XTXA 2XC1A 5C1EA 2VFNA 4W8QA 1RWRA 1KCDA 3GQ8A 1PXZA 3VMVA 3VMWA 2XT2A 1TYVA 1O8DA 2NT6A 4OJ6A 1EZGA 2QX3A 2QYUA 4OJOA 4U4BA 5JMCB 3N6ZA 4XMYA 1KTWA 2O04A 1PLUA 2QXZA 2O6WA 2VBEA 4XQFA 1QJVA 4XR6A 1O8IA 2QZAA 1O8MA 3ML3A 5AMVA 3H09A 1H80A 4OZYA 1PE9A 1OFEA 4W8RA 2B0RA 1IA5A 1KCCA 1HG8A 2BX6A 2BM7A 3GQ7A 4W8SA 4XLHA 3B4NA 2QY1A 2IOUG 3SY2A 1IDKA 1TYWA 3VSVA 2VFPA 3EQOA 4YZXA 3BH7B 3B8YA 3FY3A 1JTAA 3GQAA 4Z06A 2BM5A 2X6WA 4HWVA 4NK6A 1O8KA 1QA3A 1AIRA 1DBOA 1K4ZA 2BM4A 2F3LA 4XOPA 1NHCA 1QA2A 3PSSA 3SZEA 2IQ7A 3SQVA 3BH6B 2X6YA 3SYJA 4YZAA 3VSTA 2YUHA 1TYUA 2NTPA 2O0VA 2NTQA 2PECA 1QRBA 1O8EA 2X6XA 2NSTA 3LMWA 3RIQA 4KH3A 3LYCA 3KRGA
chains in the Genus database with same CATH topology
1VBLA 2UVEA 4XL9A 4AVZA 2NZMA 2O0WA 1IB4A 4YELA 1O8LA 1O8HA 1O8FA 3EQNA 1EE6A 1BHEA 4XORA 4W8TA 1GQ8A 4URRA 1RMGA 2NTBA 4U49A 4Z05A 2NT9A 2PYHA 3ZPPA 4XNFA 4EW9A 3SUCA 2VBMA 3JURA 2PYGA 4MXNA 1IDJA 4PMHA 2O1DA 4MR0A 4XLFA 4XN3A 1X0CA 1OGMX 1DBGA 2X3HA 2Z8GA 2X85A 3T9GA 4XLCA 1QCXA 4XKVA 1XG2A 2ODLA 4YZ0A 1BN8A 1OFLA 2VBKA 3GRHA 2INVA 2VJIA 2O17A 4OZZA 2VJJA 4Z03A 3VSUA 3ZSCA 1JRGA 4YZQA 4C2LA 3UW0A 4OJLA 2BSPA 3B90A 5C1CA 1OOCA 1CZFA 1OGOX 4XKWA 2UVFA 1RU4A 1OFMA 4XM3A 2EWEA 1O8JA 4XLEA 2INUA 4I84A 4OJ5A 1WMRA 4NK8A 2NSPA 3WWGA 4XN0A 4XLAA 1O88A 1O8GA 4XONA 4OJPA 4XOTA 1K5CA 3GQ9A 4YEJA 5C1EA 4W8QA 1KCDA 1RWRA 3GQ8A 1PXZA 3VMVA 3VMWA 1O8DA 2NT6A 4OJ6A 2QX3A 4U4BA 4OJOA 4XMYA 1KTWA 2O04A 1PLUA 2QXZA 2VBEA 4XQFA 1QJVA 4XR6A 1O8IA 1O8MA 5AMVA 1H80A 4OZYA 1PE9A 4W8RA 1IA5A 1KCCA 1HG8A 3GQ7A 4W8SA 4XLHA 3B4NA 2QY1A 1IDKA 3VSVA 3EQOA 4YZXA 3FY3A 3B8YA 4Z06A 1JTAA 3GQAA 2X6WA 4HWVA 4NK6A 1O8KA 1AIRA 1DBOA 4XOPA 1NHCA 2IQ7A 2X6YA 3VSTA 4YZAA 2NTPA 2O0VA 2NTQA 2PECA 1O8EA 2X6XA 2NSTA 3LMWA 3KRGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBL A;  2UVE A;  4XL9 A;  4AVZ A;  2NZM A;  2O0W A;  1IB4 A;  4YEL A;  1O8L A;  1O8H A;  1O8F A;  3EQN A;  1EE6 A;  1BHE A;  4XOR A;  4W8T A;  1GQ8 A;  4URR A;  1RMG A;  2NTB A;  4U49 A;  4Z05 A;  2NT9 A;  2PYH A;  3ZPP A;  4XNF A;  4EW9 A;  3SUC A;  2VBM A;  3JUR A;  2PYG A;  4MXN A;  1IDJ A;  4PMH A;  2O1D A;  4MR0 A;  4XLF A;  4XN3 A;  1X0C A;  1OGM X;  1DBG A;  2X3H A;  2Z8G A;  2X85 A;  3T9G A;  4XLC A;  1QCX A;  4XKV A;  1XG2 A;  2ODL A;  4YZ0 A;  1BN8 A;  1OFL A;  2VBK A;  3GRH A;  2INV A;  2VJI A;  2O17 A;  4OZZ A;  2VJJ A;  4Z03 A;  3VSU A;  3ZSC A;  1JRG A;  4YZQ A;  4C2L A;  3UW0 A;  4OJL A;  2BSP A;  3B90 A;  5C1C A;  1OOC A;  1CZF A;  1OGO X;  4XKW A;  2UVF A;  1RU4 A;  1OFM A;  4XM3 A;  2EWE A;  1O8J A;  4XLE A;  2INU A;  4I84 A;  4OJ5 A;  1WMR A;  4NK8 A;  2NSP A;  3WWG A;  4XN0 A;  4XLA A;  1O88 A;  1O8G A;  4XON A;  4OJP A;  4XOT A;  1K5C A;  3GQ9 A;  4YEJ A;  5C1E A;  4W8Q A;  1KCD A;  1RWR A;  3GQ8 A;  1PXZ A;  3VMV A;  3VMW A;  1O8D A;  2NT6 A;  4OJ6 A;  2QX3 A;  4U4B A;  4OJO A;  4XMY A;  1KTW A;  2O04 A;  1PLU A;  2QXZ A;  2VBE A;  4XQF A;  1QJV A;  4XR6 A;  1O8I A;  1O8M A;  5AMV A;  1H80 A;  4OZY A;  1PE9 A;  4W8R A;  1IA5 A;  1KCC A;  1HG8 A;  3GQ7 A;  4W8S A;  4XLH A;  3B4N A;  2QY1 A;  1IDK A;  3VSV A;  3EQO A;  4YZX A;  3FY3 A;  3B8Y A;  4Z06 A;  1JTA A;  3GQA A;  2X6W A;  4HWV A;  4NK6 A;  1O8K A;  1AIR A;  1DBO A;  4XOP A;  1NHC A;  2IQ7 A;  2X6Y A;  3VST A;  4YZA A;  2NTP A;  2O0V A;  2NTQ A;  2PEC A;  1O8E A;  2X6X A;  2NST A;  3LMW A;  3KRG A; 
#chains in the Genus database with same CATH topology
 1VBL A;  1HF2 A;  3JX8 A;  1TSP A;  1OFD A;  2UVE A;  4XL9 A;  4AVZ A;  4OM9 A;  2NZM A;  2O0W A;  3N90 A;  1IB4 A;  1CLW A;  4YEL A;  1O8L A;  1LLZ A;  1O8H A;  5JLV C;  1O8F A;  3EQN A;  1QA1 A;  1EE6 A;  3P4G A;  1BHE A;  4JRA C;  1LLW A;  4XOR A;  3LJY A;  4W8T A;  2BM6 A;  1GQ8 A;  4URR A;  3DU1 X;  1RMG A;  2NTB A;  4U49 A;  4YFO A;  4Z05 A;  4YC5 A;  2NT9 A;  4YDT A;  2PYH A;  3ZPP A;  4XNF A;  4EW9 A;  3SUC A;  3AK5 A;  3PET A;  2VBM A;  2XTY A;  3JUR A;  3PSZ A;  2VFM A;  2PYG A;  1DAB A;  2J8I A;  4MXN A;  2VFQ A;  1IDJ A;  4PMH A;  2O1D A;  2J8K A;  4MR0 A;  4XLF A;  4XN3 A;  1L1I A;  1X0C A;  1OGM X;  1DBG A;  2X3H A;  2Z8G A;  2X85 A;  1LM1 A;  3T9G A;  4XLC A;  1QCX A;  4XKV A;  1XG2 A;  3NAW A;  1EA0 A;  1TYX A;  2ODL A;  1BN8 A;  1OFL A;  2VBK A;  3GRH A;  4OPW A;  4YZ0 A;  2INV A;  2VJI A;  1WXR A;  3NB2 A;  2O17 A;  3TH0 A;  4OZZ A;  2VJJ A;  4V02 C;  4Z03 A;  3VSU A;  1JRG A;  2XTW A;  4YZQ A;  3ZSC A;  4C2L A;  3UW0 A;  4OJL A;  1K8F A;  2BSP A;  3B90 A;  5C1C A;  1OOC A;  1QRC A;  1CZF A;  1OGO X;  2XT4 A;  1RU4 A;  2UVF A;  4XKW A;  1OFM A;  2W7Z A;  4XM3 A;  2VFO A;  4YEI A;  2EWE A;  4YCQ A;  1O8J A;  4XLE A;  2INU A;  2G0Y A;  4I84 A;  1WMR A;  4NK8 A;  2NSP A;  4OJ5 A;  1QQ1 A;  4XN0 A;  3WWG A;  5DNS A;  2V5I A;  1O88 A;  1O8G A;  4XLA A;  4XON A;  4OJP A;  4XOT A;  1KQ5 A;  1K5C A;  3GQ9 A;  4YEJ A;  2XTX A;  2XC1 A;  5C1E A;  2VFN A;  4W8Q A;  1RWR A;  1KCD A;  3GQ8 A;  1PXZ A;  3VMV A;  3VMW A;  2XT2 A;  1TYV A;  1O8D A;  2NT6 A;  4OJ6 A;  1EZG A;  2QX3 A;  2QYU A;  4OJO A;  4U4B A;  5JMC B;  3N6Z A;  4XMY A;  1KTW A;  2O04 A;  1PLU A;  2QXZ A;  2O6W A;  2VBE A;  4XQF A;  1QJV A;  4XR6 A;  1O8I A;  2QZA A;  1O8M A;  3ML3 A;  5AMV A;  3H09 A;  1H80 A;  4OZY A;  1PE9 A;  1OFE A;  4W8R A;  2B0R A;  1IA5 A;  1KCC A;  1HG8 A;  2BX6 A;  2BM7 A;  3GQ7 A;  4W8S A;  4XLH A;  3B4N A;  2QY1 A;  2IOU G;  3SY2 A;  1IDK A;  1TYW A;  3VSV A;  2VFP A;  3EQO A;  4YZX A;  3BH7 B;  3B8Y A;  3FY3 A;  1JTA A;  3GQA A;  4Z06 A;  2BM5 A;  2X6W A;  4HWV A;  4NK6 A;  1O8K A;  1QA3 A;  1AIR A;  1DBO A;  1K4Z A;  2BM4 A;  2F3L A;  4XOP A;  1NHC A;  1QA2 A;  3PSS A;  3SZE A;  2IQ7 A;  3SQV A;  3BH6 B;  2X6Y A;  3SYJ A;  4YZA A;  3VST A;  2YUH A;  1TYU A;  2NTP A;  2O0V A;  2NTQ A;  2PEC A;  1QRB A;  1O8E A;  2X6X A;  2NST A;  3LMW A;  3RIQ A;  4KH3 A;  3LYC A;  3KRG A; 
#chains in the Genus database with same CATH homology
 1VBL A;  2UVE A;  4XL9 A;  4AVZ A;  2NZM A;  2O0W A;  1IB4 A;  4YEL A;  1O8L A;  1O8H A;  1O8F A;  3EQN A;  1EE6 A;  1BHE A;  4XOR A;  4W8T A;  1GQ8 A;  4URR A;  1RMG A;  2NTB A;  4U49 A;  4Z05 A;  2NT9 A;  2PYH A;  3ZPP A;  4XNF A;  4EW9 A;  3SUC A;  2VBM A;  3JUR A;  2PYG A;  4MXN A;  1IDJ A;  4PMH A;  2O1D A;  4MR0 A;  4XLF A;  4XN3 A;  1X0C A;  1OGM X;  1DBG A;  2X3H A;  2Z8G A;  2X85 A;  3T9G A;  4XLC A;  1QCX A;  4XKV A;  1XG2 A;  2ODL A;  4YZ0 A;  1BN8 A;  1OFL A;  2VBK A;  3GRH A;  2INV A;  2VJI A;  2O17 A;  4OZZ A;  2VJJ A;  4Z03 A;  3VSU A;  3ZSC A;  1JRG A;  4YZQ A;  4C2L A;  3UW0 A;  4OJL A;  2BSP A;  3B90 A;  5C1C A;  1OOC A;  1CZF A;  1OGO X;  4XKW A;  2UVF A;  1RU4 A;  1OFM A;  4XM3 A;  2EWE A;  1O8J A;  4XLE A;  2INU A;  4I84 A;  4OJ5 A;  1WMR A;  4NK8 A;  2NSP A;  3WWG A;  4XN0 A;  4XLA A;  1O88 A;  1O8G A;  4XON A;  4OJP A;  4XOT A;  1K5C A;  3GQ9 A;  4YEJ A;  5C1E A;  4W8Q A;  1KCD A;  1RWR A;  3GQ8 A;  1PXZ A;  3VMV A;  3VMW A;  1O8D A;  2NT6 A;  4OJ6 A;  2QX3 A;  4U4B A;  4OJO A;  4XMY A;  1KTW A;  2O04 A;  1PLU A;  2QXZ A;  2VBE A;  4XQF A;  1QJV A;  4XR6 A;  1O8I A;  1O8M A;  5AMV A;  1H80 A;  4OZY A;  1PE9 A;  4W8R A;  1IA5 A;  1KCC A;  1HG8 A;  3GQ7 A;  4W8S A;  4XLH A;  3B4N A;  2QY1 A;  1IDK A;  3VSV A;  3EQO A;  4YZX A;  3FY3 A;  3B8Y A;  4Z06 A;  1JTA A;  3GQA A;  2X6W A;  4HWV A;  4NK6 A;  1O8K A;  1AIR A;  1DBO A;  4XOP A;  1NHC A;  2IQ7 A;  2X6Y A;  3VST A;  4YZA A;  2NTP A;  2O0V A;  2NTQ A;  2PEC A;  1O8E A;  2X6X A;  2NST A;  3LMW A;  3KRG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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