1RU4A

Crystal structure of pectate lyase pel9a
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
400
structure length
400
Chain Sequence
b'ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title The crystal structure of pectate lyase Pel9A from Erwinia chrysanthemi
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 157
structure length 400
sequence length 400
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ru4A00
4HWVA 4OJPA 2O04A 4W8RA 4EW9A 1X0CA 1OFMA 2X6XA 2VJJA 3VSUA 1RU4A 3GQ7A 2VBEA 1AIRA 2O0WA 1NHCA 3ZSCA 1OFLA 4XM3A 4Z05A 3EQOA 4W8QA 4XLCA 2VBMA 2INUA 4YZ0A 2VBKA 2EWEA 3B8YA 4URRA 4XMYA 1RMGA 4XN0A 2IQ7A 2NT9A 1EE6A 1O8MA 4NK6A 3T9GA 3UW0A 1O8JA 3JURA 3B90A 4YZQA 4XKVA 1HG8A 5AMVA 4XKWA 4XLHA 1O88A 4XQFA 4YELA 3KRGA 1IDKA 2X6YA 2O0VA 4AVZA 1BHEA 2Z8GA 1IDJA 4YEJA 1DBOA 2NSTA 2NT6A 4OJ5A 1O8EA 2O17A 2NZMA 4OJ6A 2QX3A 4W8SA 3VMWA 4OJOA 1OOCA 2NSPA 1IB4A 4XNFA 1OGMX 2X3HA 5C1CA 4YZAA 1O8HA 1KCDA 2PECA 1JTAA 4C2LA 3EQNA 1O8FA 2PYGA 2O1DA 1KTWA 4Z03A 2UVFA 4XONA 1WMRA 3VSTA 2INVA 1VBLA 4MXNA 4XL9A 4MR0A 4I84A 4W8TA 4OZYA 2X6WA 1CZFA 1JRGA 1O8DA 4XLFA 3GRHA 4Z06A 2VJIA 4NK8A 4XLEA 1O8IA 4XOPA 1PLUA 3WWGA 1BN8A 2NTBA 3GQ8A 1KCCA 1O8LA 4XOTA 4XLAA 2NTQA 1O8KA 2UVEA 4OZZA 4OJLA 2ODLA 4PMHA 1QCXA 3VSVA 3GQ9A 3GQAA 4XN3A 2BSPA 1K5CA 3B4NA 3VMVA 3FY3A 1PE9A 4U4BA 1O8GA 1DBGA 1XG2A 1QJVA 2PYHA 3SUCA 3ZPPA 1GQ8A 2QXZA 1OGOX 1RWRA 5C1EA 4XORA 2NTPA 1IA5A 1PXZA 2X85A 1H80A 4U49A 4YZXA 2QY1A 3LMWA 4XR6A
chains in the Genus database with same CATH superfamily
4HWVA 4OJPA 2XTWA 2BM7A 2O04A 4W8RA 4EW9A 2XTYA 1X0CA 5JMCB 1OFMA 2X6XA 3ML3A 2VJJA 3VSUA 4YDTA 3NAWA 3SQVA 1RU4A 3GQ7A 2VBEA 3PSZA 1AIRA 1LLZA 3TH0A 1DABA 2O0WA 1NHCA 3ZSCA 1OFLA 1LM1A 4XM3A 4Z05A 2F3LA 1K4ZA 3EQOA 4W8QA 4XLCA 2VBMA 4YEIA 1QQ1A 2INUA 1K8FA 4YZ0A 2VBKA 2EWEA 3B8YA 4URRA 4XMYA 1RMGA 2BM4A 1TYXA 2IQ7A 2NT9A 4XN0A 1EE6A 2VFQA 2BM6A 3SY2A 1O8MA 4NK6A 3T9GA 3UW0A 1O8JA 4YC5A 3JURA 3B90A 1QRBA 4YZQA 4XKVA 1HG8A 5AMVA 4XKWA 4XLHA 1K5CA 1O88A 4XQFA 4YELA 1OFEA 3P4GA 2XC1A 4YFOA 4OPWA 3BH6B 3KRGA 1IDKA 3NB2A 2X6YA 2O0VA 4AVZA 1BHEA 2Z8GA 1EZGA 2XT2A 1QRCA 1LLWA 1IDJA 4YEJA 5DNSA 3LYCA 1L1IA 1DBOA 2VFMA 2NSTA 2NT6A 4OJ5A 1O8EA 1TYVA 1QA3A 2O17A 2NZMA 4JRAC 1WXRA 4OJ6A 2QX3A 4W8SA 3VMWA 3N6ZA 3JX8A 1OOCA 2NSPA 4OJOA 1IB4A 3DU1X 4XNFA 1OGMX 2X3HA 5C1CA 4YZAA 1O8HA 1KCDA 2PECA 1JTAA 4C2LA 3EQNA 1O8FA 2PYGA 2O1DA 1QA1A 1KTWA 4Z03A 2UVFA 3H09A 4XR6A 4XONA 2QZAA 2IOUG 1WMRA 3VSTA 2INVA 2J8IA 2B0RA 1VBLA 4MXNA 4XL9A 4MR0A 4I84A 4W8TA 4YCQA 4OZYA 3AK5A 2X6WA 1CZFA 1TYUA 2YUHA 1JRGA 1O8DA 3BH7B 4KH3A 4XLFA 3SZEA 3GRHA 2O6WA 4Z06A 2VJIA 4NK8A 4OM9A 4XLEA 1O8IA 2BX6A 1TSPA 1OFDA 2V5IA 4XOPA 1PLUA 3PSSA 2QYUA 3WWGA 1BN8A 2NTBA 3GQ8A 1KCCA 2J8KA 2W7ZA 1O8LA 1QA2A 1HF2A 4XOTA 1EA0A 4XLAA 2NTQA 1O8KA 2UVEA 4OZZA 4OJLA 2ODLA 4PMHA 1QCXA 3VSVA 2VFNA 3GQ9A 3GQAA 4XN3A 2BM5A 2BSPA 2XT4A 1CLWA 2XTXA 3LJYA 3N90A 3B4NA 3VMVA 2G0YA 5JLVC 3FY3A 1PE9A 4U4BA 1O8GA 1DBGA 1XG2A 3PETA 1QJVA 2PYHA 3SUCA 3ZPPA 1GQ8A 2QXZA 1OGOX 1RWRA 5C1EA 4XORA 2VFOA 2NTPA 1IA5A 2VFPA 1PXZA 2X85A 3SYJA 3RIQA 1H80A 4U49A 1TYWA 2QY1A 4V02C 4YZXA 3LMWA 1KQ5A
chains in the Genus database with same CATH topology
4HWVA 4OJPA 2O04A 4W8RA 4EW9A 1X0CA 1OFMA 2X6XA 2VJJA 3VSUA 1RU4A 3GQ7A 2VBEA 1AIRA 2O0WA 1NHCA 3ZSCA 1OFLA 4XM3A 4Z05A 3EQOA 4W8QA 4XLCA 2VBMA 2INUA 4YZ0A 2VBKA 2EWEA 3B8YA 4URRA 4XMYA 1RMGA 4XN0A 2IQ7A 2NT9A 1EE6A 1O8MA 4NK6A 3T9GA 3UW0A 1O8JA 3JURA 3B90A 4YZQA 4XKVA 1HG8A 5AMVA 4XKWA 4XLHA 1O88A 4XQFA 4YELA 3KRGA 1IDKA 2X6YA 2O0VA 4AVZA 1BHEA 2Z8GA 1IDJA 4YEJA 1DBOA 2NSTA 2NT6A 4OJ5A 1O8EA 2O17A 2NZMA 4OJ6A 2QX3A 4W8SA 3VMWA 4OJOA 1OOCA 2NSPA 1IB4A 4XNFA 1OGMX 2X3HA 5C1CA 4YZAA 1O8HA 1KCDA 2PECA 1JTAA 4C2LA 3EQNA 1O8FA 2PYGA 2O1DA 1KTWA 4Z03A 2UVFA 4XONA 1WMRA 3VSTA 2INVA 1VBLA 4MXNA 4XL9A 4MR0A 4I84A 4W8TA 4OZYA 2X6WA 1CZFA 1JRGA 1O8DA 4XLFA 3GRHA 4Z06A 2VJIA 4NK8A 4XLEA 1O8IA 4XOPA 1PLUA 3WWGA 1BN8A 2NTBA 3GQ8A 1KCCA 1O8LA 4XOTA 4XLAA 2NTQA 1O8KA 2UVEA 4OZZA 4OJLA 2ODLA 4PMHA 1QCXA 3VSVA 3GQ9A 3GQAA 4XN3A 2BSPA 1K5CA 3B4NA 3VMVA 3FY3A 1PE9A 4U4BA 1O8GA 1DBGA 1XG2A 1QJVA 2PYHA 3SUCA 3ZPPA 1GQ8A 2QXZA 1OGOX 1RWRA 5C1EA 4XORA 2NTPA 1IA5A 1PXZA 2X85A 1H80A 4U49A 4YZXA 2QY1A 3LMWA 4XR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HWV A;  4OJP A;  2O04 A;  4W8R A;  4EW9 A;  1X0C A;  1OFM A;  2X6X A;  2VJJ A;  3VSU A;  1RU4 A;  3GQ7 A;  2VBE A;  1AIR A;  2O0W A;  1NHC A;  3ZSC A;  1OFL A;  4XM3 A;  4Z05 A;  3EQO A;  4W8Q A;  4XLC A;  2VBM A;  2INU A;  4YZ0 A;  2VBK A;  2EWE A;  3B8Y A;  4URR A;  4XMY A;  1RMG A;  4XN0 A;  2IQ7 A;  2NT9 A;  1EE6 A;  1O8M A;  4NK6 A;  3T9G A;  3UW0 A;  1O8J A;  3JUR A;  3B90 A;  4YZQ A;  4XKV A;  1HG8 A;  5AMV A;  4XKW A;  4XLH A;  1O88 A;  4XQF A;  4YEL A;  3KRG A;  1IDK A;  2X6Y A;  2O0V A;  4AVZ A;  1BHE A;  2Z8G A;  1IDJ A;  4YEJ A;  1DBO A;  2NST A;  2NT6 A;  4OJ5 A;  1O8E A;  2O17 A;  2NZM A;  4OJ6 A;  2QX3 A;  4W8S A;  3VMW A;  4OJO A;  1OOC A;  2NSP A;  1IB4 A;  4XNF A;  1OGM X;  2X3H A;  5C1C A;  4YZA A;  1O8H A;  1KCD A;  2PEC A;  1JTA A;  4C2L A;  3EQN A;  1O8F A;  2PYG A;  2O1D A;  1KTW A;  4Z03 A;  2UVF A;  4XON A;  1WMR A;  3VST A;  2INV A;  1VBL A;  4MXN A;  4XL9 A;  4MR0 A;  4I84 A;  4W8T A;  4OZY A;  2X6W A;  1CZF A;  1JRG A;  1O8D A;  4XLF A;  3GRH A;  4Z06 A;  2VJI A;  4NK8 A;  4XLE A;  1O8I A;  4XOP A;  1PLU A;  3WWG A;  1BN8 A;  2NTB A;  3GQ8 A;  1KCC A;  1O8L A;  4XOT A;  4XLA A;  2NTQ A;  1O8K A;  2UVE A;  4OZZ A;  4OJL A;  2ODL A;  4PMH A;  1QCX A;  3VSV A;  3GQ9 A;  3GQA A;  4XN3 A;  2BSP A;  1K5C A;  3B4N A;  3VMV A;  3FY3 A;  1PE9 A;  4U4B A;  1O8G A;  1DBG A;  1XG2 A;  1QJV A;  2PYH A;  3SUC A;  3ZPP A;  1GQ8 A;  2QXZ A;  1OGO X;  1RWR A;  5C1E A;  4XOR A;  2NTP A;  1IA5 A;  1PXZ A;  2X85 A;  1H80 A;  4U49 A;  4YZX A;  2QY1 A;  3LMW A;  4XR6 A; 
#chains in the Genus database with same CATH topology
 4HWV A;  4OJP A;  2XTW A;  2BM7 A;  2O04 A;  4W8R A;  4EW9 A;  2XTY A;  1X0C A;  5JMC B;  1OFM A;  2X6X A;  3ML3 A;  2VJJ A;  3VSU A;  4YDT A;  3NAW A;  3SQV A;  1RU4 A;  3GQ7 A;  2VBE A;  3PSZ A;  1AIR A;  1LLZ A;  3TH0 A;  1DAB A;  2O0W A;  1NHC A;  3ZSC A;  1OFL A;  1LM1 A;  4XM3 A;  4Z05 A;  2F3L A;  1K4Z A;  3EQO A;  4W8Q A;  4XLC A;  2VBM A;  4YEI A;  1QQ1 A;  2INU A;  1K8F A;  4YZ0 A;  2VBK A;  2EWE A;  3B8Y A;  4URR A;  4XMY A;  1RMG A;  2BM4 A;  1TYX A;  2IQ7 A;  2NT9 A;  4XN0 A;  1EE6 A;  2VFQ A;  2BM6 A;  3SY2 A;  1O8M A;  4NK6 A;  3T9G A;  3UW0 A;  1O8J A;  4YC5 A;  3JUR A;  3B90 A;  1QRB A;  4YZQ A;  4XKV A;  1HG8 A;  5AMV A;  4XKW A;  4XLH A;  1K5C A;  1O88 A;  4XQF A;  4YEL A;  1OFE A;  3P4G A;  2XC1 A;  4YFO A;  4OPW A;  3BH6 B;  3KRG A;  1IDK A;  3NB2 A;  2X6Y A;  2O0V A;  4AVZ A;  1BHE A;  2Z8G A;  1EZG A;  2XT2 A;  1QRC A;  1LLW A;  1IDJ A;  4YEJ A;  5DNS A;  3LYC A;  1L1I A;  1DBO A;  2VFM A;  2NST A;  2NT6 A;  4OJ5 A;  1O8E A;  1TYV A;  1QA3 A;  2O17 A;  2NZM A;  4JRA C;  1WXR A;  4OJ6 A;  2QX3 A;  4W8S A;  3VMW A;  3N6Z A;  3JX8 A;  1OOC A;  2NSP A;  4OJO A;  1IB4 A;  3DU1 X;  4XNF A;  1OGM X;  2X3H A;  5C1C A;  4YZA A;  1O8H A;  1KCD A;  2PEC A;  1JTA A;  4C2L A;  3EQN A;  1O8F A;  2PYG A;  2O1D A;  1QA1 A;  1KTW A;  4Z03 A;  2UVF A;  3H09 A;  4XR6 A;  4XON A;  2QZA A;  2IOU G;  1WMR A;  3VST A;  2INV A;  2J8I A;  2B0R A;  1VBL A;  4MXN A;  4XL9 A;  4MR0 A;  4I84 A;  4W8T A;  4YCQ A;  4OZY A;  3AK5 A;  2X6W A;  1CZF A;  1TYU A;  2YUH A;  1JRG A;  1O8D A;  3BH7 B;  4KH3 A;  4XLF A;  3SZE A;  3GRH A;  2O6W A;  4Z06 A;  2VJI A;  4NK8 A;  4OM9 A;  4XLE A;  1O8I A;  2BX6 A;  1TSP A;  1OFD A;  2V5I A;  4XOP A;  1PLU A;  3PSS A;  2QYU A;  3WWG A;  1BN8 A;  2NTB A;  3GQ8 A;  1KCC A;  2J8K A;  2W7Z A;  1O8L A;  1QA2 A;  1HF2 A;  4XOT A;  1EA0 A;  4XLA A;  2NTQ A;  1O8K A;  2UVE A;  4OZZ A;  4OJL A;  2ODL A;  4PMH A;  1QCX A;  3VSV A;  2VFN A;  3GQ9 A;  3GQA A;  4XN3 A;  2BM5 A;  2BSP A;  2XT4 A;  1CLW A;  2XTX A;  3LJY A;  3N90 A;  3B4N A;  3VMV A;  2G0Y A;  5JLV C;  3FY3 A;  1PE9 A;  4U4B A;  1O8G A;  1DBG A;  1XG2 A;  3PET A;  1QJV A;  2PYH A;  3SUC A;  3ZPP A;  1GQ8 A;  2QXZ A;  1OGO X;  1RWR A;  5C1E A;  4XOR A;  2VFO A;  2NTP A;  1IA5 A;  2VFP A;  1PXZ A;  2X85 A;  3SYJ A;  3RIQ A;  1H80 A;  4U49 A;  1TYW A;  2QY1 A;  4V02 C;  4YZX A;  3LMW A;  1KQ5 A; 
#chains in the Genus database with same CATH homology
 4HWV A;  4OJP A;  2O04 A;  4W8R A;  4EW9 A;  1X0C A;  1OFM A;  2X6X A;  2VJJ A;  3VSU A;  1RU4 A;  3GQ7 A;  2VBE A;  1AIR A;  2O0W A;  1NHC A;  3ZSC A;  1OFL A;  4XM3 A;  4Z05 A;  3EQO A;  4W8Q A;  4XLC A;  2VBM A;  2INU A;  4YZ0 A;  2VBK A;  2EWE A;  3B8Y A;  4URR A;  4XMY A;  1RMG A;  4XN0 A;  2IQ7 A;  2NT9 A;  1EE6 A;  1O8M A;  4NK6 A;  3T9G A;  3UW0 A;  1O8J A;  3JUR A;  3B90 A;  4YZQ A;  4XKV A;  1HG8 A;  5AMV A;  4XKW A;  4XLH A;  1O88 A;  4XQF A;  4YEL A;  3KRG A;  1IDK A;  2X6Y A;  2O0V A;  4AVZ A;  1BHE A;  2Z8G A;  1IDJ A;  4YEJ A;  1DBO A;  2NST A;  2NT6 A;  4OJ5 A;  1O8E A;  2O17 A;  2NZM A;  4OJ6 A;  2QX3 A;  4W8S A;  3VMW A;  4OJO A;  1OOC A;  2NSP A;  1IB4 A;  4XNF A;  1OGM X;  2X3H A;  5C1C A;  4YZA A;  1O8H A;  1KCD A;  2PEC A;  1JTA A;  4C2L A;  3EQN A;  1O8F A;  2PYG A;  2O1D A;  1KTW A;  4Z03 A;  2UVF A;  4XON A;  1WMR A;  3VST A;  2INV A;  1VBL A;  4MXN A;  4XL9 A;  4MR0 A;  4I84 A;  4W8T A;  4OZY A;  2X6W A;  1CZF A;  1JRG A;  1O8D A;  4XLF A;  3GRH A;  4Z06 A;  2VJI A;  4NK8 A;  4XLE A;  1O8I A;  4XOP A;  1PLU A;  3WWG A;  1BN8 A;  2NTB A;  3GQ8 A;  1KCC A;  1O8L A;  4XOT A;  4XLA A;  2NTQ A;  1O8K A;  2UVE A;  4OZZ A;  4OJL A;  2ODL A;  4PMH A;  1QCX A;  3VSV A;  3GQ9 A;  3GQA A;  4XN3 A;  2BSP A;  1K5C A;  3B4N A;  3VMV A;  3FY3 A;  1PE9 A;  4U4B A;  1O8G A;  1DBG A;  1XG2 A;  1QJV A;  2PYH A;  3SUC A;  3ZPP A;  1GQ8 A;  2QXZ A;  1OGO X;  1RWR A;  5C1E A;  4XOR A;  2NTP A;  1IA5 A;  1PXZ A;  2X85 A;  1H80 A;  4U49 A;  4YZX A;  2QY1 A;  3LMW A;  4XR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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