1RU4A

Crystal structure of pectate lyase pel9a
Total Genus 157
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
400
structure length
400
Chain Sequence
ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of pectate lyase Pel9A from Erwinia chrysanthemi
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
molecule keywords Pectate lyase
total genus 157
structure length 400
sequence length 400
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1ru4A00
2INVA 1EE6A 1O8FA 2QXZA 3GQ7A 4YELA 2NT6A 2VBEA 3FY3A 3GQAA 4MR0A 4XORA 5C1EA 1IA5A 1H80A 2NSPA 4XLEA 3KRGA 4OJ5A 4W8RA 4XONA 4YZAA 3JURA 4OZZA 1RMGA 4XMYA 4XM3A 3T9GA 4XR6A 5C1CA 5AMVA 2O0VA 1QJVA 1O88A 2NTQA 1O8KA 1QCXA 1RWRA 2X6WA 1K5CA 1OFLA 3GRHA 3VSVA 4XL9A 3ZPPA 1KCDA 2VJJA 2UVEA 4I84A 4XQFA 2X85A 4OJ6A 1PE9A 4Z06A 4EW9A 4YZ0A 2O04A 2ODLA 1O8JA 4XLHA 2UVFA 3LMWA 1RU4A 4OJOA 4URRA 2X6YA 3GQ8A 2VBMA 4C2LA 2VJIA 4XLCA 1AIRA 2PYHA 3VMWA 1O8HA 1O8MA 2O17A 2O0WA 1GQ8A 3EQNA 3GQ9A 1DBOA 4XN3A 3B90A 1BN8A 4XKVA 1O8DA 2NZMA 1IDJA 1O8LA 4PMHA 1PLUA 3VSTA 4YZQA 3EQOA 1IB4A 1JTAA 1X0CA 2PECA 4HWVA 4Z05A 4YEJA 4YZXA 2Z8GA 4XN0A 4XOTA 2QY1A 2VBKA 1O8EA 1CZFA 4W8QA 2EWEA 2QX3A 1OGMX 2IQ7A 4XNFA 1KCCA 2X3HA 4W8TA 1O8GA 1HG8A 1IDKA 1JRGA 2NT9A 3VSUA 2NTPA 3UW0A 3WWGA 4MXNA 1OGOX 4U49A 2BSPA 4W8SA 1KTWA 1OFMA 2INUA 4U4BA 3VMVA 3B8YA 3ZSCA 4XOPA 1WMRA 4OJPA 4XKWA 4Z03A 4NK8A 4OZYA 1DBGA 2PYGA 1XG2A 4NK6A 4AVZA 3SUCA 2NTBA 2NSTA 1NHCA 4XLAA 4OJLA 1VBLA 1BHEA 4XLFA 1PXZA 2X6XA 1O8IA 3B4NA 1OOCA 2O1DA
chains in the Genus database with same CATH superfamily
2INVA 1EE6A 1KQ5A 1O8FA 2QXZA 3GQ7A 4YDTA 4YELA 2NT6A 2G0YA 2VBEA 3FY3A 3GQAA 4MR0A 1TSPA 4XORA 5C1EA 2YUHA 1IA5A 1H80A 2NSPA 4XLEA 2J8KA 3KRGA 4OJ5A 4W8RA 4XONA 1EZGA 4YZAA 3JURA 4OZZA 1RMGA 4XMYA 4XM3A 3T9GA 4XR6A 5C1CA 5AMVA 2O0VA 3NAWA 1QJVA 1QA3A 1O88A 2NTQA 1O8KA 1QCXA 1RWRA 5JMCB 2X6WA 1K5CA 1OFLA 2O6WA 3GRHA 3SYJA 2XC1A 4OPWA 1TYXA 3VSVA 4XL9A 1K8FA 3ZPPA 2VJJA 1KCDA 2UVEA 1QRCA 4I84A 4YC5A 4XQFA 1WXRA 2J8IA 2X85A 4OJ6A 4YEIA 1PE9A 3JX8A 2VFPA 4Z06A 3NB2A 4JRAC 2VFOA 4EW9A 4YZ0A 4OM9A 2O04A 2ODLA 1O8JA 4XLHA 2IOUG 1QQ1A 1OFEA 2BM6A 2UVFA 2XTXA 3LMWA 2BX6A 1RU4A 4OJOA 4URRA 3ML3A 2X6YA 3TH0A 3GQ8A 2VBMA 4C2LA 2VJIA 3BH7B 1LLZA 4XLCA 3SZEA 1AIRA 2PYHA 1LM1A 3VMWA 1O8HA 1O8MA 2XTYA 2O17A 2O0WA 1GQ8A 3EQNA 3GQ9A 3DU1X 1DBOA 4XN3A 3B90A 1BN8A 1TYWA 3N6ZA 2BM7A 1TYUA 4XKVA 1O8DA 1OFDA 2VFQA 2NZMA 1IDJA 1O8LA 4PMHA 1PLUA 4YFOA 3PETA 3VSTA 2V5IA 1L1IA 4YZQA 5JLVC 3EQOA 1IB4A 1JTAA 1X0CA 2PECA 4HWVA 1QA1A 4Z05A 3AK5A 4YEJA 1QRBA 4YZXA 2Z8GA 4XN0A 4XOTA 3BH6B 2BM4A 1QA2A 5DNSA 2QY1A 2VBKA 2XT4A 1O8EA 1CZFA 4W8QA 3B4NA 2EWEA 2QX3A 1OGMX 2IQ7A 4XNFA 3SQVA 1KCCA 2X3HA 4W8TA 1O8GA 1HG8A 1IDKA 2QZAA 1JRGA 2NT9A 3VSUA 1TYVA 2BM5A 2NTPA 3UW0A 3PSSA 3WWGA 3N90A 4YCQA 3RIQA 4MXNA 1OGOX 2XTWA 4U49A 2BSPA 4W8SA 1KTWA 1OFMA 2INUA 3H09A 4U4BA 1CLWA 3VMVA 3B8YA 2F3LA 3ZSCA 4XOPA 3P4GA 1WMRA 4OJPA 4XKWA 4Z03A 2B0RA 4KH3A 4NK8A 4OZYA 1DBGA 1DABA 2PYGA 1EA0A 3LJYA 3SY2A 1XG2A 4NK6A 4V02C 4AVZA 3SUCA 2XT2A 1HF2A 2NTBA 2NSTA 1NHCA 1LLWA 4XLAA 4OJLA 3LYCA 1VBLA 1BHEA 2VFMA 4XLFA 2W7ZA 1PXZA 1K4ZA 1O8IA 2QYUA 2VFNA 1OOCA 2X6XA 2O1DA 3PSZA
chains in the Genus database with same CATH topology
2INVA 1EE6A 1O8FA 2QXZA 3GQ7A 4YELA 2NT6A 2VBEA 3FY3A 3GQAA 4MR0A 4XORA 5C1EA 1IA5A 1H80A 2NSPA 4XLEA 3KRGA 4OJ5A 4W8RA 4XONA 4YZAA 3JURA 4OZZA 1RMGA 4XMYA 4XM3A 3T9GA 4XR6A 5C1CA 5AMVA 2O0VA 1QJVA 1O88A 2NTQA 1O8KA 1QCXA 1RWRA 2X6WA 1K5CA 1OFLA 3GRHA 3VSVA 4XL9A 3ZPPA 1KCDA 2VJJA 2UVEA 4I84A 4XQFA 2X85A 4OJ6A 1PE9A 4Z06A 4EW9A 4YZ0A 2O04A 2ODLA 1O8JA 4XLHA 2UVFA 3LMWA 1RU4A 4OJOA 4URRA 2X6YA 3GQ8A 2VBMA 4C2LA 2VJIA 4XLCA 1AIRA 2PYHA 3VMWA 1O8HA 1O8MA 2O17A 2O0WA 1GQ8A 3EQNA 3GQ9A 1DBOA 4XN3A 3B90A 1BN8A 4XKVA 1O8DA 2NZMA 1IDJA 1O8LA 4PMHA 1PLUA 3VSTA 4YZQA 3EQOA 1IB4A 1JTAA 1X0CA 2PECA 4HWVA 4Z05A 4YEJA 4YZXA 2Z8GA 4XN0A 4XOTA 2QY1A 2VBKA 1O8EA 1CZFA 4W8QA 2EWEA 2QX3A 1OGMX 2IQ7A 4XNFA 1KCCA 2X3HA 4W8TA 1O8GA 1HG8A 1IDKA 1JRGA 2NT9A 3VSUA 2NTPA 3UW0A 3WWGA 4MXNA 1OGOX 4U49A 2BSPA 4W8SA 1KTWA 1OFMA 2INUA 4U4BA 3VMVA 3B8YA 3ZSCA 4XOPA 1WMRA 4OJPA 4XKWA 4Z03A 4NK8A 4OZYA 1DBGA 2PYGA 1XG2A 4NK6A 4AVZA 3SUCA 2NTBA 2NSTA 1NHCA 4XLAA 4OJLA 1VBLA 1BHEA 4XLFA 1PXZA 2X6XA 1O8IA 3B4NA 1OOCA 2O1DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2INV A;  1EE6 A;  1O8F A;  2QXZ A;  3GQ7 A;  4YEL A;  2NT6 A;  2VBE A;  3FY3 A;  3GQA A;  4MR0 A;  4XOR A;  5C1E A;  1IA5 A;  1H80 A;  2NSP A;  4XLE A;  3KRG A;  4OJ5 A;  4W8R A;  4XON A;  4YZA A;  3JUR A;  4OZZ A;  1RMG A;  4XMY A;  4XM3 A;  3T9G A;  4XR6 A;  5C1C A;  5AMV A;  2O0V A;  1QJV A;  1O88 A;  2NTQ A;  1O8K A;  1QCX A;  1RWR A;  2X6W A;  1K5C A;  1OFL A;  3GRH A;  3VSV A;  4XL9 A;  3ZPP A;  1KCD A;  2VJJ A;  2UVE A;  4I84 A;  4XQF A;  2X85 A;  4OJ6 A;  1PE9 A;  4Z06 A;  4EW9 A;  4YZ0 A;  2O04 A;  2ODL A;  1O8J A;  4XLH A;  2UVF A;  3LMW A;  1RU4 A;  4OJO A;  4URR A;  2X6Y A;  3GQ8 A;  2VBM A;  4C2L A;  2VJI A;  4XLC A;  1AIR A;  2PYH A;  3VMW A;  1O8H A;  1O8M A;  2O17 A;  2O0W A;  1GQ8 A;  3EQN A;  3GQ9 A;  1DBO A;  4XN3 A;  3B90 A;  1BN8 A;  4XKV A;  1O8D A;  2NZM A;  1IDJ A;  1O8L A;  4PMH A;  1PLU A;  3VST A;  4YZQ A;  3EQO A;  1IB4 A;  1JTA A;  1X0C A;  2PEC A;  4HWV A;  4Z05 A;  4YEJ A;  4YZX A;  2Z8G A;  4XN0 A;  4XOT A;  2QY1 A;  2VBK A;  1O8E A;  1CZF A;  4W8Q A;  2EWE A;  2QX3 A;  1OGM X;  2IQ7 A;  4XNF A;  1KCC A;  2X3H A;  4W8T A;  1O8G A;  1HG8 A;  1IDK A;  1JRG A;  2NT9 A;  3VSU A;  2NTP A;  3UW0 A;  3WWG A;  4MXN A;  1OGO X;  4U49 A;  2BSP A;  4W8S A;  1KTW A;  1OFM A;  2INU A;  4U4B A;  3VMV A;  3B8Y A;  3ZSC A;  4XOP A;  1WMR A;  4OJP A;  4XKW A;  4Z03 A;  4NK8 A;  4OZY A;  1DBG A;  2PYG A;  1XG2 A;  4NK6 A;  4AVZ A;  3SUC A;  2NTB A;  2NST A;  1NHC A;  4XLA A;  4OJL A;  1VBL A;  1BHE A;  4XLF A;  1PXZ A;  2X6X A;  1O8I A;  3B4N A;  1OOC A;  2O1D A; 
#chains in the Genus database with same CATH topology
 2INV A;  1EE6 A;  1KQ5 A;  1O8F A;  2QXZ A;  3GQ7 A;  4YDT A;  4YEL A;  2NT6 A;  2G0Y A;  2VBE A;  3FY3 A;  3GQA A;  4MR0 A;  1TSP A;  4XOR A;  5C1E A;  2YUH A;  1IA5 A;  1H80 A;  2NSP A;  4XLE A;  2J8K A;  3KRG A;  4OJ5 A;  4W8R A;  4XON A;  1EZG A;  4YZA A;  3JUR A;  4OZZ A;  1RMG A;  4XMY A;  4XM3 A;  3T9G A;  4XR6 A;  5C1C A;  5AMV A;  2O0V A;  3NAW A;  1QJV A;  1QA3 A;  1O88 A;  2NTQ A;  1O8K A;  1QCX A;  1RWR A;  5JMC B;  2X6W A;  1K5C A;  1OFL A;  2O6W A;  3GRH A;  3SYJ A;  2XC1 A;  4OPW A;  1TYX A;  3VSV A;  4XL9 A;  1K8F A;  3ZPP A;  2VJJ A;  1KCD A;  2UVE A;  1QRC A;  4I84 A;  4YC5 A;  4XQF A;  1WXR A;  2J8I A;  2X85 A;  4OJ6 A;  4YEI A;  1PE9 A;  3JX8 A;  2VFP A;  4Z06 A;  3NB2 A;  4JRA C;  2VFO A;  4EW9 A;  4YZ0 A;  4OM9 A;  2O04 A;  2ODL A;  1O8J A;  4XLH A;  2IOU G;  1QQ1 A;  1OFE A;  2BM6 A;  2UVF A;  2XTX A;  3LMW A;  2BX6 A;  1RU4 A;  4OJO A;  4URR A;  3ML3 A;  2X6Y A;  3TH0 A;  3GQ8 A;  2VBM A;  4C2L A;  2VJI A;  3BH7 B;  1LLZ A;  4XLC A;  3SZE A;  1AIR A;  2PYH A;  1LM1 A;  3VMW A;  1O8H A;  1O8M A;  2XTY A;  2O17 A;  2O0W A;  1GQ8 A;  3EQN A;  3GQ9 A;  3DU1 X;  1DBO A;  4XN3 A;  3B90 A;  1BN8 A;  1TYW A;  3N6Z A;  2BM7 A;  1TYU A;  4XKV A;  1O8D A;  1OFD A;  2VFQ A;  2NZM A;  1IDJ A;  1O8L A;  4PMH A;  1PLU A;  4YFO A;  3PET A;  3VST A;  2V5I A;  1L1I A;  4YZQ A;  5JLV C;  3EQO A;  1IB4 A;  1JTA A;  1X0C A;  2PEC A;  4HWV A;  1QA1 A;  4Z05 A;  3AK5 A;  4YEJ A;  1QRB A;  4YZX A;  2Z8G A;  4XN0 A;  4XOT A;  3BH6 B;  2BM4 A;  1QA2 A;  5DNS A;  2QY1 A;  2VBK A;  2XT4 A;  1O8E A;  1CZF A;  4W8Q A;  3B4N A;  2EWE A;  2QX3 A;  1OGM X;  2IQ7 A;  4XNF A;  3SQV A;  1KCC A;  2X3H A;  4W8T A;  1O8G A;  1HG8 A;  1IDK A;  2QZA A;  1JRG A;  2NT9 A;  3VSU A;  1TYV A;  2BM5 A;  2NTP A;  3UW0 A;  3PSS A;  3WWG A;  3N90 A;  4YCQ A;  3RIQ A;  4MXN A;  1OGO X;  2XTW A;  4U49 A;  2BSP A;  4W8S A;  1KTW A;  1OFM A;  2INU A;  3H09 A;  4U4B A;  1CLW A;  3VMV A;  3B8Y A;  2F3L A;  3ZSC A;  4XOP A;  3P4G A;  1WMR A;  4OJP A;  4XKW A;  4Z03 A;  2B0R A;  4KH3 A;  4NK8 A;  4OZY A;  1DBG A;  1DAB A;  2PYG A;  1EA0 A;  3LJY A;  3SY2 A;  1XG2 A;  4NK6 A;  4V02 C;  4AVZ A;  3SUC A;  2XT2 A;  1HF2 A;  2NTB A;  2NST A;  1NHC A;  1LLW A;  4XLA A;  4OJL A;  3LYC A;  1VBL A;  1BHE A;  2VFM A;  4XLF A;  2W7Z A;  1PXZ A;  1K4Z A;  1O8I A;  2QYU A;  2VFN A;  1OOC A;  2X6X A;  2O1D A;  3PSZ A; 
#chains in the Genus database with same CATH homology
 2INV A;  1EE6 A;  1O8F A;  2QXZ A;  3GQ7 A;  4YEL A;  2NT6 A;  2VBE A;  3FY3 A;  3GQA A;  4MR0 A;  4XOR A;  5C1E A;  1IA5 A;  1H80 A;  2NSP A;  4XLE A;  3KRG A;  4OJ5 A;  4W8R A;  4XON A;  4YZA A;  3JUR A;  4OZZ A;  1RMG A;  4XMY A;  4XM3 A;  3T9G A;  4XR6 A;  5C1C A;  5AMV A;  2O0V A;  1QJV A;  1O88 A;  2NTQ A;  1O8K A;  1QCX A;  1RWR A;  2X6W A;  1K5C A;  1OFL A;  3GRH A;  3VSV A;  4XL9 A;  3ZPP A;  1KCD A;  2VJJ A;  2UVE A;  4I84 A;  4XQF A;  2X85 A;  4OJ6 A;  1PE9 A;  4Z06 A;  4EW9 A;  4YZ0 A;  2O04 A;  2ODL A;  1O8J A;  4XLH A;  2UVF A;  3LMW A;  1RU4 A;  4OJO A;  4URR A;  2X6Y A;  3GQ8 A;  2VBM A;  4C2L A;  2VJI A;  4XLC A;  1AIR A;  2PYH A;  3VMW A;  1O8H A;  1O8M A;  2O17 A;  2O0W A;  1GQ8 A;  3EQN A;  3GQ9 A;  1DBO A;  4XN3 A;  3B90 A;  1BN8 A;  4XKV A;  1O8D A;  2NZM A;  1IDJ A;  1O8L A;  4PMH A;  1PLU A;  3VST A;  4YZQ A;  3EQO A;  1IB4 A;  1JTA A;  1X0C A;  2PEC A;  4HWV A;  4Z05 A;  4YEJ A;  4YZX A;  2Z8G A;  4XN0 A;  4XOT A;  2QY1 A;  2VBK A;  1O8E A;  1CZF A;  4W8Q A;  2EWE A;  2QX3 A;  1OGM X;  2IQ7 A;  4XNF A;  1KCC A;  2X3H A;  4W8T A;  1O8G A;  1HG8 A;  1IDK A;  1JRG A;  2NT9 A;  3VSU A;  2NTP A;  3UW0 A;  3WWG A;  4MXN A;  1OGO X;  4U49 A;  2BSP A;  4W8S A;  1KTW A;  1OFM A;  2INU A;  4U4B A;  3VMV A;  3B8Y A;  3ZSC A;  4XOP A;  1WMR A;  4OJP A;  4XKW A;  4Z03 A;  4NK8 A;  4OZY A;  1DBG A;  2PYG A;  1XG2 A;  4NK6 A;  4AVZ A;  3SUC A;  2NTB A;  2NST A;  1NHC A;  4XLA A;  4OJL A;  1VBL A;  1BHE A;  4XLF A;  1PXZ A;  2X6X A;  1O8I A;  3B4N A;  1OOC A;  2O1D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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