1RUE4

Rhinovirus 14 site directed mutant n1219a complexed with antiviral compound win 52035
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
source organism Human rhinovirus 14
publication title Structural studies on human rhinovirus 14 drug-resistant compensation mutants.
pubmed doi rcsb
molecule keywords RHINOVIRUS 14
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1995-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1rue400
1RUE4 1Z7S4 1RVF4 1NA1D 1RUG4 1VBD4 1RUH4 1COV4 3JD74 2R074 1VBC4 1EAH4 1AR74 1RUJ4 4GB34 1AR94 2RM24 2RR14 1PO14 2PLV4 2RMU4 3J8F4 1R094 1BEV4 1OOPD 1D4M4 1VRH4 1HRV4 1RUD4 1AR64 2X5ID 1AL24 2HWB4 1PIV4 2RS14 1RUC4 4Q4Y4 2RS34 1POV0 1EV14 3JBG4 2HWC4 1H8TD 1R084 1MQTD 2R064 1PO24 1ASJ4 4PDWD 1HRI4 4RHV4 1HXS4 1VBB4 2RS54 4Q4V4 1K5MD 2R044 1VBE4 1RUF4 1AR84 1RUI4 4Q4W4 1RMU4 1VBA4 1PVC4 4Q4X4 1NCQD 1RHI4
chains in the Genus database with same CATH superfamily
2WS3A 3SFDA 1NA1D 3VR8A 3P4RA 1L0VA 3AEGA 3JD74 1XI1A 1AR74 3AE8A 2RR14 2RM24 4YT0A 4YSXA 1BEV4 1VRH4 1D4M4 1RUD4 2X5ID 5C3JA 1AL24 1XHZA 4Q4Y4 1EV14 4YSYA 2HWC4 2PW9A 3AEBA 1ZP0A 3AEFA 3AE6A 2RS54 3P4SA 3VRAA 3CIRA 3AEEA 3AE5A 1AR84 4Q4W4 1RMU4 2PYLA 1NCQD 1Z7S4 3AEDA 1NEKA 2R074 1VBC4 1YQ3A 1AR94 1PO14 1HRV4 2WP9A 4YTNA 1RUC4 2RS34 1H8TD 2H89A 3SFEA 1R084 4KX6A 1KFYA 1ASJ4 1YQ4A 1HRI4 3ABVA 4PDWD 1VBB4 3VR9A 3AE1A 1RUF4 2WU5A 2EX3A 2PY5A 2WDRA 1RVF4 3AEAA 1RUH4 1EAH4 4GB34 3SUCA 2PYJA 3AE2A 2PZSA 2WDVA 1OOPD 3AE7A 2RS14 2H88A 1NENA 1POV0 3JBG4 4YTPA 1MQTD 2R064 1PO24 4RHV4 1XHXA 1HXS4 2ACZA 1K5MD 2R044 2FBWA 1VBE4 2WDQA 3FI7A 3P4PA 4Q4X4 2B76A 1COV4 1RUE4 2WQYA 5C2TA 1RUG4 3P4QA 1VBD4 2WU2A 1RUJ4 4YXDA 4YSZA 3AECA 1KF6A 2PLV4 2RMU4 3J8F4 1R094 3AE3A 3AE9A 1AR64 4YTMA 1ZOYA 2HWB4 1PIV4 3GQHA 3VRBA 3AE4A 3GQKA 4Q4V4 2R7FA 1RUI4 1VBA4 1PVC4 1RHI4
chains in the Genus database with same CATH topology
1RUE4 1Z7S4 1RVF4 1NA1D 1RUG4 1VBD4 1RUH4 1COV4 3JD74 2R074 1VBC4 1EAH4 1AR74 1RUJ4 4GB34 1AR94 2RM24 2RR14 1PO14 2PLV4 2RMU4 3J8F4 1R094 1BEV4 1OOPD 1D4M4 1VRH4 1HRV4 1RUD4 1AR64 2X5ID 1AL24 2HWB4 1PIV4 2RS14 1RUC4 4Q4Y4 2RS34 1POV0 1EV14 3JBG4 2HWC4 1H8TD 1R084 1MQTD 2R064 1PO24 1ASJ4 4PDWD 1HRI4 4RHV4 1HXS4 1VBB4 2RS54 4Q4V4 1K5MD 2R044 1VBE4 1RUF4 1AR84 1RUI4 4Q4W4 1RMU4 1VBA4 1PVC4 4Q4X4 1NCQD 1RHI4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUE 4;  1Z7S 4;  1RVF 4;  1NA1 D;  1RUG 4;  1VBD 4;  1RUH 4;  1COV 4;  3JD7 4;  2R07 4;  1VBC 4;  1EAH 4;  1AR7 4;  1RUJ 4;  4GB3 4;  1AR9 4;  2RM2 4;  2RR1 4;  1PO1 4;  2PLV 4;  2RMU 4;  3J8F 4;  1R09 4;  1BEV 4;  1OOP D;  1D4M 4;  1VRH 4;  1HRV 4;  1RUD 4;  1AR6 4;  2X5I D;  1AL2 4;  2HWB 4;  1PIV 4;  2RS1 4;  1RUC 4;  4Q4Y 4;  2RS3 4;  1POV 0;  1EV1 4;  3JBG 4;  2HWC 4;  1H8T D;  1R08 4;  1MQT D;  2R06 4;  1PO2 4;  1ASJ 4;  4PDW D;  1HRI 4;  4RHV 4;  1HXS 4;  1VBB 4;  2RS5 4;  4Q4V 4;  1K5M D;  2R04 4;  1VBE 4;  1RUF 4;  1AR8 4;  1RUI 4;  4Q4W 4;  1RMU 4;  1VBA 4;  1PVC 4;  4Q4X 4;  1NCQ D;  1RHI 4; 
#chains in the Genus database with same CATH topology
 2WS3 A;  3SFD A;  1NA1 D;  3VR8 A;  3P4R A;  1L0V A;  3AEG A;  3JD7 4;  1XI1 A;  1AR7 4;  3AE8 A;  2RR1 4;  2RM2 4;  4YT0 A;  4YSX A;  1BEV 4;  1VRH 4;  1D4M 4;  1RUD 4;  2X5I D;  5C3J A;  1AL2 4;  1XHZ A;  4Q4Y 4;  1EV1 4;  4YSY A;  2HWC 4;  2PW9 A;  3AEB A;  1ZP0 A;  3AEF A;  3AE6 A;  2RS5 4;  3P4S A;  3VRA A;  3CIR A;  3AEE A;  3AE5 A;  1AR8 4;  4Q4W 4;  1RMU 4;  2PYL A;  1NCQ D;  1Z7S 4;  3AED A;  1NEK A;  2R07 4;  1VBC 4;  1YQ3 A;  1AR9 4;  1PO1 4;  1HRV 4;  2WP9 A;  4YTN A;  1RUC 4;  2RS3 4;  1H8T D;  2H89 A;  3SFE A;  1R08 4;  4KX6 A;  1KFY A;  1ASJ 4;  1YQ4 A;  1HRI 4;  3ABV A;  4PDW D;  1VBB 4;  3VR9 A;  3AE1 A;  1RUF 4;  2WU5 A;  2EX3 A;  2PY5 A;  2WDR A;  1RVF 4;  3AEA A;  1RUH 4;  1EAH 4;  4GB3 4;  3SUC A;  2PYJ A;  3AE2 A;  2PZS A;  2WDV A;  1OOP D;  3AE7 A;  2RS1 4;  2H88 A;  1NEN A;  1POV 0;  3JBG 4;  4YTP A;  1MQT D;  2R06 4;  1PO2 4;  4RHV 4;  1XHX A;  1HXS 4;  2ACZ A;  1K5M D;  2R04 4;  2FBW A;  1VBE 4;  2WDQ A;  3FI7 A;  3P4P A;  4Q4X 4;  2B76 A;  1COV 4;  1RUE 4;  2WQY A;  5C2T A;  1RUG 4;  3P4Q A;  1VBD 4;  2WU2 A;  1RUJ 4;  4YXD A;  4YSZ A;  3AEC A;  1KF6 A;  2PLV 4;  2RMU 4;  3J8F 4;  1R09 4;  3AE3 A;  3AE9 A;  1AR6 4;  4YTM A;  1ZOY A;  2HWB 4;  1PIV 4;  3GQH A;  3VRB A;  3AE4 A;  3GQK A;  4Q4V 4;  2R7F A;  1RUI 4;  1VBA 4;  1PVC 4;  1RHI 4; 
#chains in the Genus database with same CATH homology
 1RUE 4;  1Z7S 4;  1RVF 4;  1NA1 D;  1RUG 4;  1VBD 4;  1RUH 4;  1COV 4;  3JD7 4;  2R07 4;  1VBC 4;  1EAH 4;  1AR7 4;  1RUJ 4;  4GB3 4;  1AR9 4;  2RM2 4;  2RR1 4;  1PO1 4;  2PLV 4;  2RMU 4;  3J8F 4;  1R09 4;  1BEV 4;  1OOP D;  1D4M 4;  1VRH 4;  1HRV 4;  1RUD 4;  1AR6 4;  2X5I D;  1AL2 4;  2HWB 4;  1PIV 4;  2RS1 4;  1RUC 4;  4Q4Y 4;  2RS3 4;  1POV 0;  1EV1 4;  3JBG 4;  2HWC 4;  1H8T D;  1R08 4;  1MQT D;  2R06 4;  1PO2 4;  1ASJ 4;  4PDW D;  1HRI 4;  4RHV 4;  1HXS 4;  1VBB 4;  2RS5 4;  4Q4V 4;  1K5M D;  2R04 4;  1VBE 4;  1RUF 4;  1AR8 4;  1RUI 4;  4Q4W 4;  1RMU 4;  1VBA 4;  1PVC 4;  4Q4X 4;  1NCQ D;  1RHI 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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