1RUE4

Rhinovirus 14 site directed mutant n1219a complexed with antiviral compound win 52035
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
b'INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural studies on human rhinovirus 14 drug-resistant compensation mutants.
pubmed doi rcsb
molecule keywords RHINOVIRUS 14
source organism Human rhinovirus 14
molecule tags Virus
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1995-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1rue400
1RUG4 2RS14 1VRH4 1OOPD 1RUH4 1BEV4 1MQTD 2HWB4 1EV14 2RMU4 1NA1D 1RMU4 1ASJ4 1EAH4 1HXS4 1PIV4 1RUE4 1VBC4 4PDWD 4GB34 1AR74 1K5MD 1R094 1VBA4 1RHI4 2RS34 4RHV4 1AL24 1RVF4 1R084 1RUI4 1D4M4 2R074 3JBG4 3JD74 2PLV4 4Q4V4 1COV4 1RUF4 1POV0 1PVC4 2RM24 2X5ID 1PO14 1VBB4 2RR14 2HWC4 1AR94 2RS54 4Q4W4 1PO24 3J8F4 4Q4Y4 2R064 1RUC4 1AR84 1RUD4 1HRI4 1Z7S4 1VBE4 1RUJ4 1VBD4 1H8TD 1HRV4 1NCQD 2R044 1AR64 4Q4X4
chains in the Genus database with same CATH superfamily
2WU5A 1RUG4 2RS14 2H89A 1RMU4 3AEAA 1EAH4 1PIV4 4PDWD 4GB34 1AR74 3P4RA 2WU2A 2FBWA 3AECA 1L0VA 1ZOYA 3AE1A 3P4QA 2R7FA 2PY5A 4YSXA 1NENA 2RM24 1POV0 1PVC4 2ACZA 3AEBA 1AR94 4Q4W4 5C2TA 2WS3A 1NEKA 2R064 3J8F4 2WDRA 2WP9A 1VBD4 3AEDA 3VR8A 1YQ4A 1YQ3A 4YTPA 2PYLA 1RUH4 3VRAA 1MQTD 1EV14 2B76A 1VBC4 2H88A 1HXS4 1XHZA 3AE4A 1K5MD 1R094 3AEFA 1RVF4 1R084 3AE2A 2R074 1XI1A 3AE9A 2PLV4 2PYJA 1RUF4 3AE3A 2RR14 2HWC4 4YXDA 3VRBA 1AR84 1RUD4 1VRH4 1NCQD 2R044 2WQYA 2RS54 1AR64 3AE8A 4Q4X4 5C3JA 4YT0A 1OOPD 1BEV4 3AE6A 1RUE4 3CIRA 4YSZA 2EX3A 2WDVA 1VBA4 3AE5A 4YTMA 1RHI4 4YTNA 1AL24 2PW9A 3SFEA 3JD74 4KX6A 4Q4V4 1COV4 2X5ID 1VBB4 1KF6A 1PO24 4Q4Y4 1RUC4 1KFYA 1Z7S4 3GQHA 3AEGA 3VR9A 1H8TD 1ZP0A 3P4PA 3P4SA 2HWB4 2RMU4 1NA1D 1ASJ4 3GQKA 2PZSA 3SFDA 3FI7A 2RS34 4YSYA 4RHV4 1RUI4 3AEEA 1D4M4 3JBG4 1XHXA 3ABVA 3AE7A 1PO14 2WDQA 3SUCA 1HRI4 1VBE4 1RUJ4 1HRV4
chains in the Genus database with same CATH topology
1RUG4 2RS14 1VRH4 1OOPD 1RUH4 1BEV4 1MQTD 2HWB4 1EV14 2RMU4 1NA1D 1RMU4 1ASJ4 1EAH4 1HXS4 1PIV4 1RUE4 1VBC4 4PDWD 4GB34 1AR74 1K5MD 1R094 1VBA4 1RHI4 2RS34 4RHV4 1AL24 1RVF4 1R084 1RUI4 1D4M4 2R074 3JBG4 3JD74 2PLV4 4Q4V4 1COV4 1RUF4 1POV0 1PVC4 2RM24 2X5ID 1PO14 1VBB4 2RR14 2HWC4 1AR94 2RS54 4Q4W4 1PO24 3J8F4 4Q4Y4 2R064 1RUC4 1AR84 1RUD4 1HRI4 1Z7S4 1VBE4 1RUJ4 1VBD4 1H8TD 1HRV4 1NCQD 2R044 1AR64 4Q4X4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUG 4;  2RS1 4;  1VRH 4;  1OOP D;  1RUH 4;  1BEV 4;  1MQT D;  2HWB 4;  1EV1 4;  2RMU 4;  1NA1 D;  1RMU 4;  1ASJ 4;  1EAH 4;  1HXS 4;  1PIV 4;  1RUE 4;  1VBC 4;  4PDW D;  4GB3 4;  1AR7 4;  1K5M D;  1R09 4;  1VBA 4;  1RHI 4;  2RS3 4;  4RHV 4;  1AL2 4;  1RVF 4;  1R08 4;  1RUI 4;  1D4M 4;  2R07 4;  3JBG 4;  3JD7 4;  2PLV 4;  4Q4V 4;  1COV 4;  1RUF 4;  1POV 0;  1PVC 4;  2RM2 4;  2X5I D;  1PO1 4;  1VBB 4;  2RR1 4;  2HWC 4;  1AR9 4;  2RS5 4;  4Q4W 4;  1PO2 4;  3J8F 4;  4Q4Y 4;  2R06 4;  1RUC 4;  1AR8 4;  1RUD 4;  1HRI 4;  1Z7S 4;  1VBE 4;  1RUJ 4;  1VBD 4;  1H8T D;  1HRV 4;  1NCQ D;  2R04 4;  1AR6 4;  4Q4X 4; 
#chains in the Genus database with same CATH topology
 2WU5 A;  1RUG 4;  2RS1 4;  2H89 A;  1RMU 4;  3AEA A;  1EAH 4;  1PIV 4;  4PDW D;  4GB3 4;  1AR7 4;  3P4R A;  2WU2 A;  2FBW A;  3AEC A;  1L0V A;  1ZOY A;  3AE1 A;  3P4Q A;  2R7F A;  2PY5 A;  4YSX A;  1NEN A;  2RM2 4;  1POV 0;  1PVC 4;  2ACZ A;  3AEB A;  1AR9 4;  4Q4W 4;  5C2T A;  2WS3 A;  1NEK A;  2R06 4;  3J8F 4;  2WDR A;  2WP9 A;  1VBD 4;  3AED A;  3VR8 A;  1YQ4 A;  1YQ3 A;  4YTP A;  2PYL A;  1RUH 4;  3VRA A;  1MQT D;  1EV1 4;  2B76 A;  1VBC 4;  2H88 A;  1HXS 4;  1XHZ A;  3AE4 A;  1K5M D;  1R09 4;  3AEF A;  1RVF 4;  1R08 4;  3AE2 A;  2R07 4;  1XI1 A;  3AE9 A;  2PLV 4;  2PYJ A;  1RUF 4;  3AE3 A;  2RR1 4;  2HWC 4;  4YXD A;  3VRB A;  1AR8 4;  1RUD 4;  1VRH 4;  1NCQ D;  2R04 4;  2WQY A;  2RS5 4;  1AR6 4;  3AE8 A;  4Q4X 4;  5C3J A;  4YT0 A;  1OOP D;  1BEV 4;  3AE6 A;  1RUE 4;  3CIR A;  4YSZ A;  2EX3 A;  2WDV A;  1VBA 4;  3AE5 A;  4YTM A;  1RHI 4;  4YTN A;  1AL2 4;  2PW9 A;  3SFE A;  3JD7 4;  4KX6 A;  4Q4V 4;  1COV 4;  2X5I D;  1VBB 4;  1KF6 A;  1PO2 4;  4Q4Y 4;  1RUC 4;  1KFY A;  1Z7S 4;  3GQH A;  3AEG A;  3VR9 A;  1H8T D;  1ZP0 A;  3P4P A;  3P4S A;  2HWB 4;  2RMU 4;  1NA1 D;  1ASJ 4;  3GQK A;  2PZS A;  3SFD A;  3FI7 A;  2RS3 4;  4YSY A;  4RHV 4;  1RUI 4;  3AEE A;  1D4M 4;  3JBG 4;  1XHX A;  3ABV A;  3AE7 A;  1PO1 4;  2WDQ A;  3SUC A;  1HRI 4;  1VBE 4;  1RUJ 4;  1HRV 4; 
#chains in the Genus database with same CATH homology
 1RUG 4;  2RS1 4;  1VRH 4;  1OOP D;  1RUH 4;  1BEV 4;  1MQT D;  2HWB 4;  1EV1 4;  2RMU 4;  1NA1 D;  1RMU 4;  1ASJ 4;  1EAH 4;  1HXS 4;  1PIV 4;  1RUE 4;  1VBC 4;  4PDW D;  4GB3 4;  1AR7 4;  1K5M D;  1R09 4;  1VBA 4;  1RHI 4;  2RS3 4;  4RHV 4;  1AL2 4;  1RVF 4;  1R08 4;  1RUI 4;  1D4M 4;  2R07 4;  3JBG 4;  3JD7 4;  2PLV 4;  4Q4V 4;  1COV 4;  1RUF 4;  1POV 0;  1PVC 4;  2RM2 4;  2X5I D;  1PO1 4;  1VBB 4;  2RR1 4;  2HWC 4;  1AR9 4;  2RS5 4;  4Q4W 4;  1PO2 4;  3J8F 4;  4Q4Y 4;  2R06 4;  1RUC 4;  1AR8 4;  1RUD 4;  1HRI 4;  1Z7S 4;  1VBE 4;  1RUJ 4;  1VBD 4;  1H8T D;  1HRV 4;  1NCQ D;  2R04 4;  1AR6 4;  4Q4X 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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