1RWDA

Backbone nmr structure of a mutant p. furiosus rubredoxin using residual dipolar couplings
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
50
structure length
50
Chain Sequence
AKYVCKICGYIYDEDAGDPDNGVSPGTKFEEIPDDWVCPICGAPKSEFEK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Dipolar Coupling Based Strategy for Simultaneous Resonance Assignment and Structure Determination of Protein Backbones
pubmed doi rcsb
molecule tags Electron transport
source organism Pyrococcus furiosus
molecule keywords Rubredoxin
total genus 3
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2003-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1rwdA00
4ME3A 1R0JA 1VCXA 1QCVA 2LCQA 3PWFA 1JYBA 2PVXA 3MPSA 3SS2A 1DVBA 2M4YA 3KYXA 2K2DA 2QL0A 4YWMA 4YWLA 1IU5A 3RYGA 1FHMA 3KYWA 2MS3A 1B13A 4AR4A 4TPUA 5AI2A 1DX8A 2RDVA 3KYUA 1BFYA 1B2JA 1LTLA 1B2OA 2KKDA 3KYYA 1ZRPA 5IY0A 1SMWA 1RWDA 1YV1A 2PYAA 1SMMA 1LKOA 1RB9A 1BQ9A 3KYVA 8RXNA 1NNQA 1YK4A 1QYBA 1RYTA 2PVEA 4K9FA 1R0FA 1R0GA 1IROA 1FHHA 1BQ8A 4AR3A 2KN9A 5AI3A 1T9QA 2VL6A 4AR6A 1C09A 7RXNA 1T9OA 1B71A 3A44A 1YK5A 1BE7A 2HR5A 1R0HA 4POFA 1S2ZA 1SMUA 3RZTA 1LKPA 4RXNA 2GMGA 4AR5A 1RDGA 1T9PA 1BRFA 1YUZA 5RXNA 1LKMA 1S30A 1RDVA 1R0IA 3QVDA 1CADA 2V3BB 3RZ6A 3PZAA 1YUXA 1IU6A 1E8JA 4POGA 1CAAA 2DSXA 1S24A 1IRNA 6RXNA 1H7VA
chains in the Genus database with same CATH superfamily
3QQCE 1R0JA 2LCQA 3PWFA 2PVXA 4LHNA 3GTQL 3KYXA 3H99A 3GTJL 2AQCA 4YWMA 1Z92B 2J9UB 1RYQA 3HKZP 1IU5A 5M5XL 5C44L 3RYGA 3KYWA 4AR4A 5FJ8L 3GTML 1LTLA 3PO2L 1B2OA 3KYYA 2A68D 4A3ML 3GTLL 2V0FA 1SMWA 3PL5A 2YU9L 2PYAA 3S2HL 1BQ9A 2M6OA 3MQKB 2V0EA 5AN9H 3PIP1 1R0FA 2PVEA 4QIWP 2KN9A 4GS7D 1K83L 5MFPA 2VL6A 2XJPA 4AR6A 5EIOC 3J7Z1 3H97A 3LPEB 4JAGA 4U671 4BBRL 1R0HA 5JVH1 4POFA 5C3EL 5H1Sc 4Y52L 4A3JL 1LKPA 2PMZP 4BBSL 2NVTL 1T9PA 4TVMA 3RZDL 3S16L 1R0IA 3ZG6A 3B08B 3QVDA 3RZ6A 3M3YL 3LWOB 4C3JL 2NVXL 1E8JA 4AI2A 4A3CL 1S24A 1H7VA 3S14L 2ZIXA 3PKIA 1VCXA 1PFYA 1VZHA 2CKAA 4A3FL 3MPSA 3SS2A 5DM61 1DVBA 2JA5L 3M4OL 3HAXC 1TWCL 3K35A 3GTOL 5GAEc 2XJQA 2MS3A 1DX8A 4TPUA 1PFVA 5AI2A 5K2ME 2NVQL 2E2IL 3KYUA 1BFYA 1Y1VL 1ZRPA 4G6BA 5EINC 3K7AL 4AI1A 1SMMA 1LKOA 2R92L 3KYVA 3LNLA 2PPTA 3HOYL 3H9BA 5MFZA 4AI3A 1QYBA 1RYTA 2AYJA 4JADA 1BQ8A 2M6PA 1PFWA 5IYDL 4AR3A 5AI3A 3PIO1 1VZIA 3GTPL 1T9QA 3H0GL 4LHLA 2L0ZA 2RFKB 3GTKL 3A44A 1NXEA 3WWLA 3I4ML 4BY7L 3FDJA 5IP7L 2PSMC 2AUSB 3P8BA 3PKJA 2Y0SP 1F4LA 5GAHc 3NFPI 1TWGL 2A6HD 1BRFA 1LKMA 3HOWL 4ZN1B 4A3DL 4AYBP 1CADA 3P2AA 2CR8A 5M3ML 4BXXL 1YUXA 1WCML 1IRNA 6RXNA 2R7ZL 5GAGc 2H12A 1QCVA 3HJWB 3H9CA 1JYBA 2JA8L 4A3IL 4A3LL 2JA7L 4A3GL 2XJVA 3RZOL 2QL0A 2E2HL 1QQTA 4YWLA 3MSUA 1FHMA 1B13A 2XJUA 4AHWA 4V196 3HOVL 2Z3RB 4XGHA 5GADc 2VUML 5C4XL 2Z3QB 5IYBL 2C6BA 4AHZA 5MGNA 1RWDA 2C6AA 2EY4E 1NNQA 3CQZL 3HOUL 2A69D 4K9FA 1R0GA 1IROA 1TWHL 3PO3L 2B5ID 5IYCL 4Y7NL 3IU3I 5C4JL 1T9OA 1B71A 1YK5A 4A93L 1VZGA 3LWPB 3S1QL 3JR7A 3GTGL 2ERJA 4X6AL 3B0AB 1S2ZA 1I6HL 1SMUA 1R9TL 4RXNA 2GMGA 4AR5A 4XXBB 1P7PA 3I4NL 1YUZA 2B63L 5RXNA 1OWCA 1S30A 3VPBE 1RDVA 1I50L 2XJTA 2XJRA 3PZAA 4POGA 1CAAA 4B8CD 2JI3A 2NVYL 1PZXA 1WJVA 4AHYA 4C3IL 1Y1WL 1TWAL 4ME3A 3FKIL 5MF6A 4AI0A 3J7Y1 4C2M1 4A3BL 2M4YA 2K2DA 2JA6L 5FLML 4JAEA 3S1RL 5IP9L 3HOXL 5MLC3 3S1ML 3LWQB 2RDVA 2E2JL 2XJSA 4C3HL 1B2JA 2JI2A 3LWVB 2KKDA 3LWRB 5DM71 5IY0A 4A3KL 2NYDA 2WAQP 1YV1A 1RB9A 8RXNA 2ERSA 5M5WL 1YK4A 1FHHA 3H3VM 2BE5D 1OWBA 5JVG1 3HJYB 1NXGA 2O5JD 3S1NL 2HVYC 1C09A 7RXNA 3S17L 3S15L 4E6YA 1BE7A 1SFOL 4A3EL 2HR5A 1IW7D 2R93L 4BY1L 2APOB 1TWFL 3S2DL 2A6ED 2WB1P 3RZTA 5M5YL 4UY81 1RDGA 4ZN3B 2M4VA 2CKCA 4WFN1 3HOZL 4JAFA 4AHXA 2JI1A 1I3QL 2V3BB 1IU6A 2DSXA 1PFUA 3WWNB 5M3FL 1ODHA
chains in the Genus database with same CATH topology
3PKIA 3QQCE 4ME3A 1R0JA 5MF6A 1VCXA 1QCVA 1VZHA 2CKAA 3PWFA 2LCQA 4AI0A 1JYBA 2PVXA 3MPSA 3J7Y1 3SS2A 5DM61 2XJVA 1DVBA 2M4YA 3KYXA 4LHNA 2K2DA 2QL0A 4YWMA 1Z92B 2J9UB 4YWLA 1RYQA 4JAEA 3K35A 3MSUA 1IU5A 5GAEc 3RYGA 1FHMA 2XJQA 3KYWA 2MS3A 1B13A 2XJUA 4AHWA 4AR4A 4TPUA 5AI2A 5K2ME 5MLC3 2Z3RB 4V196 1DX8A 2RDVA 4XGHA 3KYUA 1BFYA 2XJSA 5GADc 1B2JA 2JI2A 1LTLA 1B2OA 2KKDA 3KYYA 1ZRPA 2A68D 2Z3QB 4G6BA 2C6BA 2V0FA 4AHZA 5IY0A 5DM71 1SMWA 5EINC 1RWDA 5MGNA 2C6AA 2NYDA 4AI1A 1YV1A 2PYAA 1SMMA 1LKOA 1RB9A 1BQ9A 3KYVA 2ERSA 8RXNA 3LNLA 1NNQA 2M6OA 2PPTA 5MFZA 2V0EA 5AN9H 3PIP1 1YK4A 1QYBA 1RYTA 2A69D 2PVEA 4K9FA 1R0FA 2AYJA 4JADA 1IROA 1FHHA 1BQ8A 2M6PA 1R0GA 2BE5D 4AR3A 2KN9A 4GS7D 5AI3A 1OWBA 5JVG1 3PIO1 2B5ID 1VZIA 1T9QA 1NXGA 2O5JD 5MFPA 3IU3I 2VL6A 2XJPA 4AR6A 1C09A 2L0ZA 4LHLA 5EIOC 7RXNA 3J7Z1 1T9OA 1B71A 3A44A 1NXEA 1YK5A 4E6YA 3LPEB 1VZGA 1BE7A 3WWLA 4JAGA 4U671 2HR5A 1R0HA 2ERJA 1IW7D 5JVH1 4POFA 2PSMC 3B0AB 1S2ZA 5H1Sc 1SMUA 2A6ED 3RZTA 3P8BA 1LKPA 3PKJA 4RXNA 2GMGA 5GAHc 4AR5A 4UY81 3NFPI 1RDGA 4XXBB 1T9PA 2A6HD 4ZN3B 4TVMA 2M4VA 1BRFA 1YUZA 2CKCA 5RXNA 4WFN1 4JAFA 4AHXA 1OWCA 1LKMA 1S30A 3VPBE 1RDVA 4ZN1B 1R0IA 2XJTA 2JI1A 3ZG6A 2XJRA 3B08B 3QVDA 1CADA 2V3BB 3P2AA 2CR8A 3RZ6A 3PZAA 1YUXA 1IU6A 1E8JA 4AI2A 1CAAA 4POGA 2DSXA 4B8CD 1S24A 2JI3A 4AI3A 3WWNB 1IRNA 6RXNA 1H7VA 5GAGc 1WJVA 4AHYA 2H12A 1ODHA 2ZIXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ME3 A;  1R0J A;  1VCX A;  1QCV A;  2LCQ A;  3PWF A;  1JYB A;  2PVX A;  3MPS A;  3SS2 A;  1DVB A;  2M4Y A;  3KYX A;  2K2D A;  2QL0 A;  4YWM A;  4YWL A;  1IU5 A;  3RYG A;  1FHM A;  3KYW A;  2MS3 A;  1B13 A;  4AR4 A;  4TPU A;  5AI2 A;  1DX8 A;  2RDV A;  3KYU A;  1BFY A;  1B2J A;  1LTL A;  1B2O A;  2KKD A;  3KYY A;  1ZRP A;  5IY0 A;  1SMW A;  1RWD A;  1YV1 A;  2PYA A;  1SMM A;  1LKO A;  1RB9 A;  1BQ9 A;  3KYV A;  8RXN A;  1NNQ A;  1YK4 A;  1QYB A;  1RYT A;  2PVE A;  4K9F A;  1R0F A;  1R0G A;  1IRO A;  1FHH A;  1BQ8 A;  4AR3 A;  2KN9 A;  5AI3 A;  1T9Q A;  2VL6 A;  4AR6 A;  1C09 A;  7RXN A;  1T9O A;  1B71 A;  3A44 A;  1YK5 A;  1BE7 A;  2HR5 A;  1R0H A;  4POF A;  1S2Z A;  1SMU A;  3RZT A;  1LKP A;  4RXN A;  2GMG A;  4AR5 A;  1RDG A;  1T9P A;  1BRF A;  1YUZ A;  5RXN A;  1LKM A;  1S30 A;  1RDV A;  1R0I A;  3QVD A;  1CAD A;  2V3B B;  3RZ6 A;  3PZA A;  1YUX A;  1IU6 A;  1E8J A;  4POG A;  1CAA A;  2DSX A;  1S24 A;  1IRN A;  6RXN A;  1H7V A; 
#chains in the Genus database with same CATH topology
 3QQC E;  1R0J A;  2LCQ A;  3PWF A;  2PVX A;  4LHN A;  3GTQ L;  3KYX A;  3H99 A;  3GTJ L;  2AQC A;  4YWM A;  1Z92 B;  2J9U B;  1RYQ A;  3HKZ P;  1IU5 A;  5M5X L;  5C44 L;  3RYG A;  3KYW A;  4AR4 A;  5FJ8 L;  3GTM L;  1LTL A;  3PO2 L;  1B2O A;  3KYY A;  2A68 D;  4A3M L;  3GTL L;  2V0F A;  1SMW A;  3PL5 A;  2YU9 L;  2PYA A;  3S2H L;  1BQ9 A;  2M6O A;  3MQK B;  2V0E A;  5AN9 H;  3PIP 1;  1R0F A;  2PVE A;  4QIW P;  2KN9 A;  4GS7 D;  1K83 L;  5MFP A;  2VL6 A;  2XJP A;  4AR6 A;  5EIO C;  3J7Z 1;  3H97 A;  3LPE B;  4JAG A;  4U67 1;  4BBR L;  1R0H A;  5JVH 1;  4POF A;  5C3E L;  5H1S c;  4Y52 L;  4A3J L;  1LKP A;  2PMZ P;  4BBS L;  2NVT L;  1T9P A;  4TVM A;  3RZD L;  3S16 L;  1R0I A;  3ZG6 A;  3B08 B;  3QVD A;  3RZ6 A;  3M3Y L;  3LWO B;  4C3J L;  2NVX L;  1E8J A;  4AI2 A;  4A3C L;  1S24 A;  1H7V A;  3S14 L;  2ZIX A;  3PKI A;  1VCX A;  1PFY A;  1VZH A;  2CKA A;  4A3F L;  3MPS A;  3SS2 A;  5DM6 1;  1DVB A;  2JA5 L;  3M4O L;  3HAX C;  1TWC L;  3K35 A;  3GTO L;  5GAE c;  2XJQ A;  2MS3 A;  1DX8 A;  4TPU A;  1PFV A;  5AI2 A;  5K2M E;  2NVQ L;  2E2I L;  3KYU A;  1BFY A;  1Y1V L;  1ZRP A;  4G6B A;  5EIN C;  3K7A L;  4AI1 A;  1SMM A;  1LKO A;  2R92 L;  3KYV A;  3LNL A;  2PPT A;  3HOY L;  3H9B A;  5MFZ A;  4AI3 A;  1QYB A;  1RYT A;  2AYJ A;  4JAD A;  1BQ8 A;  2M6P A;  1PFW A;  5IYD L;  4AR3 A;  5AI3 A;  3PIO 1;  1VZI A;  3GTP L;  1T9Q A;  3H0G L;  4LHL A;  2L0Z A;  2RFK B;  3GTK L;  3A44 A;  1NXE A;  3WWL A;  3I4M L;  4BY7 L;  3FDJ A;  5IP7 L;  2PSM C;  2AUS B;  3P8B A;  3PKJ A;  2Y0S P;  1F4L A;  5GAH c;  3NFP I;  1TWG L;  2A6H D;  1BRF A;  1LKM A;  3HOW L;  4ZN1 B;  4A3D L;  4AYB P;  1CAD A;  3P2A A;  2CR8 A;  5M3M L;  4BXX L;  1YUX A;  1WCM L;  1IRN A;  6RXN A;  2R7Z L;  5GAG c;  2H12 A;  1QCV A;  3HJW B;  3H9C A;  1JYB A;  2JA8 L;  4A3I L;  4A3L L;  2JA7 L;  4A3G L;  2XJV A;  3RZO L;  2QL0 A;  2E2H L;  1QQT A;  4YWL A;  3MSU A;  1FHM A;  1B13 A;  2XJU A;  4AHW A;  4V19 6;  3HOV L;  2Z3R B;  4XGH A;  5GAD c;  2VUM L;  5C4X L;  2Z3Q B;  5IYB L;  2C6B A;  4AHZ A;  5MGN A;  1RWD A;  2C6A A;  2EY4 E;  1NNQ A;  3CQZ L;  3HOU L;  2A69 D;  4K9F A;  1R0G A;  1IRO A;  1TWH L;  3PO3 L;  2B5I D;  5IYC L;  4Y7N L;  3IU3 I;  5C4J L;  1T9O A;  1B71 A;  1YK5 A;  4A93 L;  1VZG A;  3LWP B;  3S1Q L;  3JR7 A;  3GTG L;  2ERJ A;  4X6A L;  3B0A B;  1S2Z A;  1I6H L;  1SMU A;  1R9T L;  4RXN A;  2GMG A;  4AR5 A;  4XXB B;  1P7P A;  3I4N L;  1YUZ A;  2B63 L;  5RXN A;  1OWC A;  1S30 A;  3VPB E;  1RDV A;  1I50 L;  2XJT A;  2XJR A;  3PZA A;  4POG A;  1CAA A;  4B8C D;  2JI3 A;  2NVY L;  1PZX A;  1WJV A;  4AHY A;  4C3I L;  1Y1W L;  1TWA L;  4ME3 A;  3FKI L;  5MF6 A;  4AI0 A;  3J7Y 1;  4C2M 1;  4A3B L;  2M4Y A;  2K2D A;  2JA6 L;  5FLM L;  4JAE A;  3S1R L;  5IP9 L;  3HOX L;  5MLC 3;  3S1M L;  3LWQ B;  2RDV A;  2E2J L;  2XJS A;  4C3H L;  1B2J A;  2JI2 A;  3LWV B;  2KKD A;  3LWR B;  5DM7 1;  5IY0 A;  4A3K L;  2NYD A;  2WAQ P;  1YV1 A;  1RB9 A;  8RXN A;  2ERS A;  5M5W L;  1YK4 A;  1FHH A;  3H3V M;  2BE5 D;  1OWB A;  5JVG 1;  3HJY B;  1NXG A;  2O5J D;  3S1N L;  2HVY C;  1C09 A;  7RXN A;  3S17 L;  3S15 L;  4E6Y A;  1BE7 A;  1SFO L;  4A3E L;  2HR5 A;  1IW7 D;  2R93 L;  4BY1 L;  2APO B;  1TWF L;  3S2D L;  2A6E D;  2WB1 P;  3RZT A;  5M5Y L;  4UY8 1;  1RDG A;  4ZN3 B;  2M4V A;  2CKC A;  4WFN 1;  3HOZ L;  4JAF A;  4AHX A;  2JI1 A;  1I3Q L;  2V3B B;  1IU6 A;  2DSX A;  1PFU A;  3WWN B;  5M3F L;  1ODH A; 
#chains in the Genus database with same CATH homology
 3PKI A;  3QQC E;  4ME3 A;  1R0J A;  5MF6 A;  1VCX A;  1QCV A;  1VZH A;  2CKA A;  3PWF A;  2LCQ A;  4AI0 A;  1JYB A;  2PVX A;  3MPS A;  3J7Y 1;  3SS2 A;  5DM6 1;  2XJV A;  1DVB A;  2M4Y A;  3KYX A;  4LHN A;  2K2D A;  2QL0 A;  4YWM A;  1Z92 B;  2J9U B;  4YWL A;  1RYQ A;  4JAE A;  3K35 A;  3MSU A;  1IU5 A;  5GAE c;  3RYG A;  1FHM A;  2XJQ A;  3KYW A;  2MS3 A;  1B13 A;  2XJU A;  4AHW A;  4AR4 A;  4TPU A;  5AI2 A;  5K2M E;  5MLC 3;  2Z3R B;  4V19 6;  1DX8 A;  2RDV A;  4XGH A;  3KYU A;  1BFY A;  2XJS A;  5GAD c;  1B2J A;  2JI2 A;  1LTL A;  1B2O A;  2KKD A;  3KYY A;  1ZRP A;  2A68 D;  2Z3Q B;  4G6B A;  2C6B A;  2V0F A;  4AHZ A;  5IY0 A;  5DM7 1;  1SMW A;  5EIN C;  1RWD A;  5MGN A;  2C6A A;  2NYD A;  4AI1 A;  1YV1 A;  2PYA A;  1SMM A;  1LKO A;  1RB9 A;  1BQ9 A;  3KYV A;  2ERS A;  8RXN A;  3LNL A;  1NNQ A;  2M6O A;  2PPT A;  5MFZ A;  2V0E A;  5AN9 H;  3PIP 1;  1YK4 A;  1QYB A;  1RYT A;  2A69 D;  2PVE A;  4K9F A;  1R0F A;  2AYJ A;  4JAD A;  1IRO A;  1FHH A;  1BQ8 A;  2M6P A;  1R0G A;  2BE5 D;  4AR3 A;  2KN9 A;  4GS7 D;  5AI3 A;  1OWB A;  5JVG 1;  3PIO 1;  2B5I D;  1VZI A;  1T9Q A;  1NXG A;  2O5J D;  5MFP A;  3IU3 I;  2VL6 A;  2XJP A;  4AR6 A;  1C09 A;  2L0Z A;  4LHL A;  5EIO C;  7RXN A;  3J7Z 1;  1T9O A;  1B71 A;  3A44 A;  1NXE A;  1YK5 A;  4E6Y A;  3LPE B;  1VZG A;  1BE7 A;  3WWL A;  4JAG A;  4U67 1;  2HR5 A;  1R0H A;  2ERJ A;  1IW7 D;  5JVH 1;  4POF A;  2PSM C;  3B0A B;  1S2Z A;  5H1S c;  1SMU A;  2A6E D;  3RZT A;  3P8B A;  1LKP A;  3PKJ A;  4RXN A;  2GMG A;  5GAH c;  4AR5 A;  4UY8 1;  3NFP I;  1RDG A;  4XXB B;  1T9P A;  2A6H D;  4ZN3 B;  4TVM A;  2M4V A;  1BRF A;  1YUZ A;  2CKC A;  5RXN A;  4WFN 1;  4JAF A;  4AHX A;  1OWC A;  1LKM A;  1S30 A;  3VPB E;  1RDV A;  4ZN1 B;  1R0I A;  2XJT A;  2JI1 A;  3ZG6 A;  2XJR A;  3B08 B;  3QVD A;  1CAD A;  2V3B B;  3P2A A;  2CR8 A;  3RZ6 A;  3PZA A;  1YUX A;  1IU6 A;  1E8J A;  4AI2 A;  1CAA A;  4POG A;  2DSX A;  4B8C D;  1S24 A;  2JI3 A;  4AI3 A;  3WWN B;  1IRN A;  6RXN A;  1H7V A;  5GAG c;  1WJV A;  4AHY A;  2H12 A;  1ODH A;  2ZIX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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