1RY9A

Spa15, a type iii secretion chaperone from shigella flexneri
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
133
structure length
133
Chain Sequence
MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAINIALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEILNGVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords Surface presentation of antigens protein spaK
publication title Structure of Spa15, a type III secretion chaperone from Shigella flexneri with broad specificity.
pubmed doi rcsb
source organism Shigella flexneri
total genus 40
structure length 133
sequence length 133
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03519 Invas_SpaK Invasion protein B family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.10 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 1ry9A00
1XKPC 3TU3A 3EPUA 3CXJA 1JYAA 1S28A 1XKPB 2BSJA 4AKXA 1JYOA 1N5BA 4GF3A 1K3EA 3KXYA 1RY9A 2BHOA 4G6TA 4JMFB 1K3SA 2XGAA 2FM8A 2BSIA 2BSHA 1TTWA 1L2WA 2PLGA 1K6ZA
chains in the Genus database with same CATH superfamily
1XKPC 3TU3A 3ULEF 3EPUA 3CXJA 1JYAA 3UKUD 2P9PD 1S28A 1XKPB 2P9SD 2P9NF 2BSJA 2P9UF 3ULED 2LPUA 4XEIF 4EBRA 2KC5A 4AKXA 1JYOA 1N5BA 4GF3A 2P9ND 3VX7B 1TYQF 2P9UD 1K3EA 1U2VF 2DYTA 1K8KF 3DXMF 2P9IF 3KXYA 4XEID 1RY9A 2OD0A 2BHOA 2P9KF 3DXKF 4G6TA 4GSLC 1TYQD 2P9ID 1U2VD 3UKRF 1K8KD 2MQDA 3DXMD 2P9LF 2P9KD 3DWLF 3DXKD 4JMFB 1K3SA 2XGAA 4H5BA 2FM8A 3RSEF 3UKRD 2BSIA 2BSHA 1TTWA 2P9LD 4JD2F 1L2WA 3DWLD 2PLGA 3VX8B 1K6ZA 3UKUF 2P9PF 3RSED 2P9SF 4JD2D
chains in the Genus database with same CATH topology
1XKPC 3TU3A 3ULEF 3EPUA 3CXJA 1JYAA 3UKUD 2P9PD 1S28A 1XKPB 2P9SD 2P9NF 2BSJA 2P9UF 3ULED 2LPUA 4XEIF 4EBRA 2KC5A 4AKXA 1JYOA 1N5BA 4GF3A 2P9ND 3VX7B 1TYQF 2P9UD 1K3EA 1U2VF 2DYTA 1K8KF 3DXMF 2P9IF 3KXYA 4XEID 1RY9A 3DXKF 2BHOA 2P9KF 4G6TA 4GSLC 1TYQD 2P9ID 1U2VD 3UKRF 1K8KD 2MQDA 3DXMD 2P9LF 2P9KD 3DWLF 3DXKD 4JMFB 1K3SA 2XGAA 4H5BA 2FM8A 3RSEF 3UKRD 2BSIA 2BSHA 1TTWA 2P9LD 4JD2F 1L2WA 3DWLD 2PLGA 3VX8B 1K6ZA 3UKUF 2P9PF 3RSED 2P9SF 4JD2D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XKP C;  3TU3 A;  3EPU A;  3CXJ A;  1JYA A;  1S28 A;  1XKP B;  2BSJ A;  4AKX A;  1JYO A;  1N5B A;  4GF3 A;  1K3E A;  3KXY A;  1RY9 A;  2BHO A;  4G6T A;  4JMF B;  1K3S A;  2XGA A;  2FM8 A;  2BSI A;  2BSH A;  1TTW A;  1L2W A;  2PLG A;  1K6Z A; 
#chains in the Genus database with same CATH topology
 1XKP C;  3TU3 A;  3ULE F;  3EPU A;  3CXJ A;  1JYA A;  3UKU D;  2P9P D;  1S28 A;  1XKP B;  2P9S D;  2P9N F;  2BSJ A;  2P9U F;  3ULE D;  2LPU A;  4XEI F;  4EBR A;  2KC5 A;  4AKX A;  1JYO A;  1N5B A;  4GF3 A;  2P9N D;  3VX7 B;  1TYQ F;  2P9U D;  1K3E A;  1U2V F;  2DYT A;  1K8K F;  3DXM F;  2P9I F;  3KXY A;  4XEI D;  1RY9 A;  2OD0 A;  2BHO A;  2P9K F;  3DXK F;  4G6T A;  4GSL C;  1TYQ D;  2P9I D;  1U2V D;  3UKR F;  1K8K D;  2MQD A;  3DXM D;  2P9L F;  2P9K D;  3DWL F;  3DXK D;  4JMF B;  1K3S A;  2XGA A;  4H5B A;  2FM8 A;  3RSE F;  3UKR D;  2BSI A;  2BSH A;  1TTW A;  2P9L D;  4JD2 F;  1L2W A;  3DWL D;  2PLG A;  3VX8 B;  1K6Z A;  3UKU F;  2P9P F;  3RSE D;  2P9S F;  4JD2 D; 
#chains in the Genus database with same CATH homology
 1XKP C;  3TU3 A;  3ULE F;  3EPU A;  3CXJ A;  1JYA A;  3UKU D;  2P9P D;  1S28 A;  1XKP B;  2P9S D;  2P9N F;  2BSJ A;  2P9U F;  3ULE D;  2LPU A;  4XEI F;  4EBR A;  2KC5 A;  4AKX A;  1JYO A;  1N5B A;  4GF3 A;  2P9N D;  3VX7 B;  1TYQ F;  2P9U D;  1K3E A;  1U2V F;  2DYT A;  1K8K F;  3DXM F;  2P9I F;  3KXY A;  4XEI D;  1RY9 A;  3DXK F;  2BHO A;  2P9K F;  4G6T A;  4GSL C;  1TYQ D;  2P9I D;  1U2V D;  3UKR F;  1K8K D;  2MQD A;  3DXM D;  2P9L F;  2P9K D;  3DWL F;  3DXK D;  4JMF B;  1K3S A;  2XGA A;  4H5B A;  2FM8 A;  3RSE F;  3UKR D;  2BSI A;  2BSH A;  1TTW A;  2P9L D;  4JD2 F;  1L2W A;  3DWL D;  2PLG A;  3VX8 B;  1K6Z A;  3UKU F;  2P9P F;  3RSE D;  2P9S F;  4JD2 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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