The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
59
|
sequence length |
193
|
structure length |
193
|
Chain Sequence |
MATFYEVIVRVPFDVEEHLPGISDSFVDWVTGQIWELPPESDLNLTLVEQPQLTVADRIRRVFLYEWNKFSKQESKFFVQFEKGSEYFHLHTLVETSGISSMVLGRYVSQIRAQLVKVVFQGIEPQINDWVAITKVKKGGANKVVDSGYIPAYLLPKVQPELQWAWTNLDEYKLAALNLEERKRLVAQFLAES
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein/dna
|
| molecule keywords |
26-MER
|
| publication title |
The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces.
pubmed doi rcsb |
| source organism |
Adeno-associated virus - 5
|
| total genus |
59
|
| structure length |
193
|
| sequence length |
193
|
| chains with identical sequence |
B, C, D, E
|
| ec nomenclature | |
| pdb deposition date | 2003-12-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08724 | Rep_N | Rep protein catalytic domain like |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Replication Protein E1; Chain: A, | Replication Protein E1; Chain: A, |
#chains in the Genus database with same CATH superfamily 2ITJ A; 4LMD A; 5DCX A; 5D9I A; 1Z1D B; 4ZQ9 A; 2NL8 A; 4NBP A; 1L5I A; 1RZ9 A; 2HW0 A; 2IPR A; 1TBD A; 2FUF A; 4FGN A; 4FB3 A; 3QN2 A; 3QK2 A; 3QFQ A; 2TBD A; 5BYG A; 1L2M A; 2IF9 A; 2ITL A; 1UUT A; 2NTC A; 4ZO0 A; 5CYN A; 1M55 A; 4GDF A; 4LIF A; #chains in the Genus database with same CATH topology 2ITJ A; 4LMD A; 4KW3 A; 3DKX A; 4U87 A; 5DCX A; 5D9I A; 1F08 A; 1Z1D B; 4ZQ9 A; 2NL8 A; 4NBP A; 1L5I A; 1RZ9 A; 1R9W A; 2HW0 A; 2IPR A; 1TBD A; 1M55 A; 2FUF A; 4FGN A; 1KSY A; 4FB3 A; 3QN2 A; 3QK2 A; 3QFQ A; 5BYG A; 1L2M A; 2IF9 A; 2ITL A; 3DKY A; 1UUT A; 2NTC A; 4ZO0 A; 5CYN A; 2TBD A; 1KSX A; 4GDF A; 4LIF A; #chains in the Genus database with same CATH homology 2ITJ A; 4LMD A; 4KW3 A; 3DKX A; 4U87 A; 5DCX A; 5D9I A; 1F08 A; 1Z1D B; 4ZQ9 A; 2NL8 A; 4NBP A; 1L5I A; 1RZ9 A; 1R9W A; 2HW0 A; 2IPR A; 1TBD A; 1M55 A; 2FUF A; 4FGN A; 1KSY A; 4FB3 A; 3QN2 A; 3QK2 A; 3QFQ A; 5BYG A; 1L2M A; 2IF9 A; 2ITL A; 3DKY A; 1UUT A; 2NTC A; 4ZO0 A; 5CYN A; 2TBD A; 1KSX A; 4GDF A; 4LIF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
