1S04A

Solution nmr structure of protein pf0455 from pyrococcus furiosus. northeast structural genomics consortium target pfr13
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
110
structure length
110
Chain Sequence
MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSFREMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYGVVAIEIEPLEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein PF0455
publication title Solution Structure Of The Hypothetical Protein PF0455 From Pyrococcus furiosus: Northeast Structural Genomics Consortium Target PfR13
rcsb
source organism Pyrococcus furiosus
total genus 17
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2003-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04266 ASCH ASCH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 1s04A00
1TE7A 1WK2A 2E5OA 2DP9A 2Z0TA 2KKUA 1S04A 1XNEA 3IUWA
chains in the Genus database with same CATH superfamily
3LWRA 3LWOA 2P38A 1IT8A 3M6XA 3M4XA 1T5YA 1K8WA 2Q07A 3M6VA 1R3EA 3M6UA 2ANEA 3C0KA 3D79A 2AS0A 3LDFA 2B78A 1ZS7A 1ZE2A 1TE7A 1R3FA 2DP9A 1J2BA 2CX1A 3LJCA 1IQ8A 2AUSA 2KKUA 3ZV0C 1S04A 1SQWA 4CI1B 3LWQA 2EY4A 2J5TA 2HVYA 4Q1TA 1XNEA 1UOYA 3UAIA 3HAXA 2APOA 2FRXA 3HJYA 4DMGA 1WXWA 1WK2A 2E5OA 3M65A 2Z0TA 3M6WA 3LWPA 3MQKA 3VSEA 1IT7A 2AB4A 4CI2B 3LWVA 1Q7HA 4CI3B 2CX0A 2CWWA 1ZBOA 1ZL3A 1ZE1A 2J5VA 4TZ4C 3HJWA 1WXXA 3U28A 2RFKA 1SGVA 3IUWA
chains in the Genus database with same CATH topology
1TE7A 4P78C 1WK2A 2E5OA 2DP9A 2Z0TA 4C26A 1WHZA 2KKUA 1S04A 1XNEA 3IUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TE7 A;  1WK2 A;  2E5O A;  2DP9 A;  2Z0T A;  2KKU A;  1S04 A;  1XNE A;  3IUW A; 
#chains in the Genus database with same CATH topology
 3LWR A;  3LWO A;  2P38 A;  1IT8 A;  3M6X A;  3M4X A;  1T5Y A;  1K8W A;  2Q07 A;  3M6V A;  1R3E A;  3M6U A;  2ANE A;  3C0K A;  3D79 A;  2AS0 A;  3LDF A;  2B78 A;  1ZS7 A;  1ZE2 A;  1TE7 A;  1R3F A;  2DP9 A;  1J2B A;  2CX1 A;  3LJC A;  1IQ8 A;  2AUS A;  2KKU A;  3ZV0 C;  1S04 A;  1SQW A;  4CI1 B;  3LWQ A;  2EY4 A;  2J5T A;  2HVY A;  4Q1T A;  1XNE A;  1UOY A;  3UAI A;  3HAX A;  2APO A;  2FRX A;  3HJY A;  4DMG A;  1WXW A;  1WK2 A;  2E5O A;  3M65 A;  2Z0T A;  3M6W A;  3LWP A;  3MQK A;  3VSE A;  1IT7 A;  2AB4 A;  4CI2 B;  3LWV A;  1Q7H A;  4CI3 B;  2CX0 A;  2CWW A;  1ZBO A;  1ZL3 A;  1ZE1 A;  2J5V A;  4TZ4 C;  3HJW A;  1WXX A;  3U28 A;  2RFK A;  1SGV A;  3IUW A; 
#chains in the Genus database with same CATH homology
 1TE7 A;  4P78 C;  1WK2 A;  2E5O A;  2DP9 A;  2Z0T A;  4C26 A;  1WHZ A;  2KKU A;  1S04 A;  1XNE A;  3IUW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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