1S3LA

Structural and functional characterization of a novel archaeal phosphodiesterase
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
165
structure length
165
Chain Sequence
MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Phosphodiesterase
molecule keywords Hypothetical protein MJ0936
total genus 51
structure length 165
sequence length 165
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1s3lA00
2USHA 3ZTVA 4NZVA 3H66A 2WDCA 5B8IA 1S70A 3HVQA 4XPNA 2Z72A 3IB7A 3IB8A 1OIDA 3E7BA 3TGHA 4H1YP 5JJTA 4FBWA 4MOVA 2GJUA 2QFPA 4H2IA 2A22A 2CV9A 5HPEA 4KKZA 4LACC 2IE4C 1FJMA 3C9FA 3DSCA 1WAO1 2BQ8X 1XZWA 4H2FA 4UT2A 4MOYA 1S3MA 4ZVZA 1AUIA 4DSYA 4UT3A 1W24A 3H67A 3PSOA 4DHLA 4H1SA 3EGHA 2O8GA 2HYPA 5DNYA 2NXFA 4F0ZA 1S3LA 5EQVA 4HD0A 3QFNA 1S8EA 2BCDA 3RQZA 2HYOA 4ZX2A 1T71A 2Q8UA 4LU9A 4M0VA 4O24A 1USHA 3N5UA 3THOB 2QJCA 4FBQA 1T70A 1Z2XA 4Q7FA 4MP0A 2WDDA 5JPFA 1HP1A 1G5BA 2NPPC 3PSNA 4LTYA 4O4KA 4WWLA 2WDFA 1QFCA 3DW8C 3AV0A 3H60A 5JPEA 1QHWA 4KBPA 4I5LC 3IVEA 2IE3C 4FCXA 3K7VC 2JOGA 3H68A 3ICFA 3C5WC 5F3WA 4J6OA 3H61A 3EGGA 1KBPA 2YVTA 2HY1A 2O8AA 4IYPC 1V73A 3DSDA 2NYLC 1HPUA 3P71C 2ZBMA 4I5NC 2DFJA 3H63A 4UT3B 2XMOA 5IOHA 5C1VA 1UF3A 2P6BA 3KBPA 1II7A 4V0VA 3THNA 3QFOA 2R17A 1IT6A 3AUZA 3GVEA 4ORBA 4OR9A 3T1IA 3CK2A 4H2GA 1UTEA 1SU1A 3E7AA 4H2BA 3RL5A 2Z06A 2BDXA 3RL3A 1HO5A 3IVDA 1S95A 4JA9A 3H64A 2QFRA 5INBA 1Z2WA 1NNWA 1U32A 3QG5C 1OIEA 4ORCA 4ORAA 4V0XA 4UWQA 3K7WC 2KKNA 4G9JA 1TCOA 3QFKA 3RL4A 3ZU0A 1JK7A 4DT2A 4FBKA 1M63A 4O43A 3JYFA 2Z1AA 4TUIA 3QFMA 4IL1A 5J28A 1OI8A 4O5GA 3LL8A 3H62B 2IAEC 4V0WA 4YKEA 5GTUA 1WARA 2NYMC 4JA7A 1MF8A 1S3NA 2WDEA 3FGAC 2AHDA 4B2OA 3H69A 4TUGA 1XM7A 3V4YA
chains in the Genus database with same CATH superfamily
2USHA 3ZTVA 4NZVA 3H66A 2WDCA 5B8IA 1S70A 3HVQA 4XPNA 2Z72A 3IB7A 3IB8A 1OIDA 3E7BA 3TGHA 4H1YP 5JJTA 4FBWA 4MOVA 2GJUA 2QFPA 4H2IA 2A22A 2CV9A 5HPEA 4KKZA 4LACC 2IE4C 1FJMA 3C9FA 3DSCA 1WAO1 2BQ8X 1XZWA 4H2FA 4UT2A 4MOYA 1S3MA 4ZVZA 1AUIA 4DSYA 4UT3A 1W24A 3H67A 3PSOA 4DHLA 4H1SA 3EGHA 3E0JA 2O8GA 2HYPA 5DNYA 2NXFA 4F0ZA 1S3LA 5EQVA 4HD0A 3QFNA 1S8EA 2BCDA 3RQZA 2HYOA 4ZX2A 3D03A 1T71A 2Q8UA 2DXLA 4LU9A 4M0VA 4O24A 1USHA 3N5UA 3THOB 2QJCA 4FBQA 1T70A 1Z2XA 4Q7FA 4MP0A 2WDDA 5JPFA 1HP1A 1G5BA 2NPPC 3PSNA 4LTYA 4O4KA 4WWLA 2WDFA 1QFCA 3DW8C 3AV0A 3FLOA 3H60A 5JPEA 1QHWA 4KBPA 4I5LC 3IVEA 2IE3C 4FCXA 3K7VC 2JOGA 3H68A 3ICFA 3C5WC 5F3WA 4J6OA 3H61A 3EGGA 1KBPA 2YVTA 2HY1A 2O8AA 4IYPC 1V73A 3DSDA 2NYLC 1HPUA 3P71C 2ZBMA 4I5NC 2DFJA 3H63A 4UT3B 2XMOA 2YEQA 5IOHA 5C1VA 1UF3A 2P6BA 3KBPA 1II7A 4V0VA 3THNA 3QFOA 2R17A 1IT6A 3AUZA 3GVEA 4ORBA 4OR9A 2DXNA 3T1IA 3CK2A 4H2GA 1UTEA 1SU1A 3E7AA 4H2BA 3RL5A 2Z06A 2BDXA 3RL3A 1HO5A 3IVDA 1S95A 4JA9A 3H64A 2QFRA 5INBA 1Z2WA 1NNWA 1U32A 3QG5C 1OIEA 4ORCA 4ORAA 4V0XA 4UWQA 3K7WC 2KKNA 4G9JA 1TCOA 2ZOAA 3QFKA 3RL4A 3ZU0A 2ZO9B 1JK7A 4DT2A 4FBKA 1M63A 4O43A 3JYFA 2Z1AA 4TUIA 3QFMA 4IL1A 5J28A 1OI8A 4O5GA 3LL8A 3H62B 2IAEC 4V0WA 4YKEA 5GTUA 1WARA 2NYMC 4JA7A 1MF8A 1S3NA 2WDEA 3FGAC 2AHDA 4B2OA 3H69A 4TUGA 1XM7A 3V4YA
chains in the Genus database with same CATH topology
2USHA 3ZTVA 4NZVA 3H66A 2WDCA 5B8IA 1S70A 3HVQA 4XPNA 2Z72A 3IB7A 3IB8A 1OIDA 3E7BA 3TGHA 4H1YP 5JJTA 4FBWA 4MOVA 2GJUA 2QFPA 4H2IA 2A22A 2CV9A 5HPEA 4KKZA 4LACC 2IE4C 1FJMA 3C9FA 3DSCA 1WAO1 2BQ8X 1XZWA 4H2FA 4UT2A 4MOYA 1S3MA 4ZVZA 1AUIA 4DSYA 4UT3A 1W24A 3H67A 3PSOA 4DHLA 4H1SA 3EGHA 3E0JA 2O8GA 2HYPA 5DNYA 2NXFA 4F0ZA 1S3LA 5EQVA 4HD0A 3QFNA 1S8EA 2BCDA 3RQZA 2HYOA 4ZX2A 3D03A 1T71A 2Q8UA 2DXLA 4LU9A 4M0VA 4O24A 1USHA 3N5UA 3THOB 2QJCA 4FBQA 1T70A 1Z2XA 4Q7FA 4MP0A 2WDDA 5JPFA 1HP1A 1G5BA 2NPPC 3PSNA 4LTYA 4O4KA 4WWLA 2WDFA 1QFCA 3DW8C 3AV0A 3FLOA 3H60A 5JPEA 1QHWA 4KBPA 4I5LC 3IVEA 2IE3C 4FCXA 3K7VC 2JOGA 3H68A 3ICFA 3C5WC 5F3WA 4J6OA 3H61A 3EGGA 1KBPA 2YVTA 2HY1A 2O8AA 4IYPC 1V73A 3DSDA 2NYLC 1HPUA 3P71C 2ZBMA 4I5NC 2DFJA 3H63A 4UT3B 2XMOA 2YEQA 5IOHA 5C1VA 1UF3A 2P6BA 3KBPA 1II7A 4V0VA 3THNA 3QFOA 2R17A 1IT6A 3AUZA 3GVEA 4ORBA 4OR9A 2DXNA 3T1IA 3CK2A 4H2GA 1UTEA 1SU1A 3E7AA 4H2BA 3RL5A 2Z06A 2BDXA 3RL3A 1HO5A 3IVDA 1S95A 4JA9A 3H64A 2QFRA 5INBA 1Z2WA 1NNWA 1U32A 3QG5C 1OIEA 4ORCA 4ORAA 4V0XA 4UWQA 3K7WC 2KKNA 4G9JA 1TCOA 2ZOAA 3QFKA 3RL4A 3ZU0A 2ZO9B 1JK7A 4DT2A 4FBKA 1M63A 4O43A 3JYFA 2Z1AA 4TUIA 3QFMA 4IL1A 5J28A 1OI8A 4O5GA 3LL8A 3H62B 2IAEC 4V0WA 4YKEA 5GTUA 1WARA 2NYMC 4JA7A 1MF8A 1S3NA 2WDEA 3FGAC 2AHDA 4B2OA 3H69A 4TUGA 1XM7A 3V4YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2USH A;  3ZTV A;  4NZV A;  3H66 A;  2WDC A;  5B8I A;  1S70 A;  3HVQ A;  4XPN A;  2Z72 A;  3IB7 A;  3IB8 A;  1OID A;  3E7B A;  3TGH A;  4H1Y P;  5JJT A;  4FBW A;  4MOV A;  2GJU A;  2QFP A;  4H2I A;  2A22 A;  2CV9 A;  5HPE A;  4KKZ A;  4LAC C;  2IE4 C;  1FJM A;  3C9F A;  3DSC A;  1WAO 1;  2BQ8 X;  1XZW A;  4H2F A;  4UT2 A;  4MOY A;  1S3M A;  4ZVZ A;  1AUI A;  4DSY A;  4UT3 A;  1W24 A;  3H67 A;  3PSO A;  4DHL A;  4H1S A;  3EGH A;  2O8G A;  2HYP A;  5DNY A;  2NXF A;  4F0Z A;  1S3L A;  5EQV A;  4HD0 A;  3QFN A;  1S8E A;  2BCD A;  3RQZ A;  2HYO A;  4ZX2 A;  1T71 A;  2Q8U A;  4LU9 A;  4M0V A;  4O24 A;  1USH A;  3N5U A;  3THO B;  2QJC A;  4FBQ A;  1T70 A;  1Z2X A;  4Q7F A;  4MP0 A;  2WDD A;  5JPF A;  1HP1 A;  1G5B A;  2NPP C;  3PSN A;  4LTY A;  4O4K A;  4WWL A;  2WDF A;  1QFC A;  3DW8 C;  3AV0 A;  3H60 A;  5JPE A;  1QHW A;  4KBP A;  4I5L C;  3IVE A;  2IE3 C;  4FCX A;  3K7V C;  2JOG A;  3H68 A;  3ICF A;  3C5W C;  5F3W A;  4J6O A;  3H61 A;  3EGG A;  1KBP A;  2YVT A;  2HY1 A;  2O8A A;  4IYP C;  1V73 A;  3DSD A;  2NYL C;  1HPU A;  3P71 C;  2ZBM A;  4I5N C;  2DFJ A;  3H63 A;  4UT3 B;  2XMO A;  5IOH A;  5C1V A;  1UF3 A;  2P6B A;  3KBP A;  1II7 A;  4V0V A;  3THN A;  3QFO A;  2R17 A;  1IT6 A;  3AUZ A;  3GVE A;  4ORB A;  4OR9 A;  3T1I A;  3CK2 A;  4H2G A;  1UTE A;  1SU1 A;  3E7A A;  4H2B A;  3RL5 A;  2Z06 A;  2BDX A;  3RL3 A;  1HO5 A;  3IVD A;  1S95 A;  4JA9 A;  3H64 A;  2QFR A;  5INB A;  1Z2W A;  1NNW A;  1U32 A;  3QG5 C;  1OIE A;  4ORC A;  4ORA A;  4V0X A;  4UWQ A;  3K7W C;  2KKN A;  4G9J A;  1TCO A;  3QFK A;  3RL4 A;  3ZU0 A;  1JK7 A;  4DT2 A;  4FBK A;  1M63 A;  4O43 A;  3JYF A;  2Z1A A;  4TUI A;  3QFM A;  4IL1 A;  5J28 A;  1OI8 A;  4O5G A;  3LL8 A;  3H62 B;  2IAE C;  4V0W A;  4YKE A;  5GTU A;  1WAR A;  2NYM C;  4JA7 A;  1MF8 A;  1S3N A;  2WDE A;  3FGA C;  2AHD A;  4B2O A;  3H69 A;  4TUG A;  1XM7 A;  3V4Y A; 
#chains in the Genus database with same CATH topology
 2USH A;  3ZTV A;  4NZV A;  3H66 A;  2WDC A;  5B8I A;  1S70 A;  3HVQ A;  4XPN A;  2Z72 A;  3IB7 A;  3IB8 A;  1OID A;  3E7B A;  3TGH A;  4H1Y P;  5JJT A;  4FBW A;  4MOV A;  2GJU A;  2QFP A;  4H2I A;  2A22 A;  2CV9 A;  5HPE A;  4KKZ A;  4LAC C;  2IE4 C;  1FJM A;  3C9F A;  3DSC A;  1WAO 1;  2BQ8 X;  1XZW A;  4H2F A;  4UT2 A;  4MOY A;  1S3M A;  4ZVZ A;  1AUI A;  4DSY A;  4UT3 A;  1W24 A;  3H67 A;  3PSO A;  4DHL A;  4H1S A;  3EGH A;  3E0J A;  2O8G A;  2HYP A;  5DNY A;  2NXF A;  4F0Z A;  1S3L A;  5EQV A;  4HD0 A;  3QFN A;  1S8E A;  2BCD A;  3RQZ A;  2HYO A;  4ZX2 A;  3D03 A;  1T71 A;  2Q8U A;  2DXL A;  4LU9 A;  4M0V A;  4O24 A;  1USH A;  3N5U A;  3THO B;  2QJC A;  4FBQ A;  1T70 A;  1Z2X A;  4Q7F A;  4MP0 A;  2WDD A;  5JPF A;  1HP1 A;  1G5B A;  2NPP C;  3PSN A;  4LTY A;  4O4K A;  4WWL A;  2WDF A;  1QFC A;  3DW8 C;  3AV0 A;  3FLO A;  3H60 A;  5JPE A;  1QHW A;  4KBP A;  4I5L C;  3IVE A;  2IE3 C;  4FCX A;  3K7V C;  2JOG A;  3H68 A;  3ICF A;  3C5W C;  5F3W A;  4J6O A;  3H61 A;  3EGG A;  1KBP A;  2YVT A;  2HY1 A;  2O8A A;  4IYP C;  1V73 A;  3DSD A;  2NYL C;  1HPU A;  3P71 C;  2ZBM A;  4I5N C;  2DFJ A;  3H63 A;  4UT3 B;  2XMO A;  2YEQ A;  5IOH A;  5C1V A;  1UF3 A;  2P6B A;  3KBP A;  1II7 A;  4V0V A;  3THN A;  3QFO A;  2R17 A;  1IT6 A;  3AUZ A;  3GVE A;  4ORB A;  4OR9 A;  2DXN A;  3T1I A;  3CK2 A;  4H2G A;  1UTE A;  1SU1 A;  3E7A A;  4H2B A;  3RL5 A;  2Z06 A;  2BDX A;  3RL3 A;  1HO5 A;  3IVD A;  1S95 A;  4JA9 A;  3H64 A;  2QFR A;  5INB A;  1Z2W A;  1NNW A;  1U32 A;  3QG5 C;  1OIE A;  4ORC A;  4ORA A;  4V0X A;  4UWQ A;  3K7W C;  2KKN A;  4G9J A;  1TCO A;  2ZOA A;  3QFK A;  3RL4 A;  3ZU0 A;  2ZO9 B;  1JK7 A;  4DT2 A;  4FBK A;  1M63 A;  4O43 A;  3JYF A;  2Z1A A;  4TUI A;  3QFM A;  4IL1 A;  5J28 A;  1OI8 A;  4O5G A;  3LL8 A;  3H62 B;  2IAE C;  4V0W A;  4YKE A;  5GTU A;  1WAR A;  2NYM C;  4JA7 A;  1MF8 A;  1S3N A;  2WDE A;  3FGA C;  2AHD A;  4B2O A;  3H69 A;  4TUG A;  1XM7 A;  3V4Y A; 
#chains in the Genus database with same CATH homology
 2USH A;  3ZTV A;  4NZV A;  3H66 A;  2WDC A;  5B8I A;  1S70 A;  3HVQ A;  4XPN A;  2Z72 A;  3IB7 A;  3IB8 A;  1OID A;  3E7B A;  3TGH A;  4H1Y P;  5JJT A;  4FBW A;  4MOV A;  2GJU A;  2QFP A;  4H2I A;  2A22 A;  2CV9 A;  5HPE A;  4KKZ A;  4LAC C;  2IE4 C;  1FJM A;  3C9F A;  3DSC A;  1WAO 1;  2BQ8 X;  1XZW A;  4H2F A;  4UT2 A;  4MOY A;  1S3M A;  4ZVZ A;  1AUI A;  4DSY A;  4UT3 A;  1W24 A;  3H67 A;  3PSO A;  4DHL A;  4H1S A;  3EGH A;  3E0J A;  2O8G A;  2HYP A;  5DNY A;  2NXF A;  4F0Z A;  1S3L A;  5EQV A;  4HD0 A;  3QFN A;  1S8E A;  2BCD A;  3RQZ A;  2HYO A;  4ZX2 A;  3D03 A;  1T71 A;  2Q8U A;  2DXL A;  4LU9 A;  4M0V A;  4O24 A;  1USH A;  3N5U A;  3THO B;  2QJC A;  4FBQ A;  1T70 A;  1Z2X A;  4Q7F A;  4MP0 A;  2WDD A;  5JPF A;  1HP1 A;  1G5B A;  2NPP C;  3PSN A;  4LTY A;  4O4K A;  4WWL A;  2WDF A;  1QFC A;  3DW8 C;  3AV0 A;  3FLO A;  3H60 A;  5JPE A;  1QHW A;  4KBP A;  4I5L C;  3IVE A;  2IE3 C;  4FCX A;  3K7V C;  2JOG A;  3H68 A;  3ICF A;  3C5W C;  5F3W A;  4J6O A;  3H61 A;  3EGG A;  1KBP A;  2YVT A;  2HY1 A;  2O8A A;  4IYP C;  1V73 A;  3DSD A;  2NYL C;  1HPU A;  3P71 C;  2ZBM A;  4I5N C;  2DFJ A;  3H63 A;  4UT3 B;  2XMO A;  2YEQ A;  5IOH A;  5C1V A;  1UF3 A;  2P6B A;  3KBP A;  1II7 A;  4V0V A;  3THN A;  3QFO A;  2R17 A;  1IT6 A;  3AUZ A;  3GVE A;  4ORB A;  4OR9 A;  2DXN A;  3T1I A;  3CK2 A;  4H2G A;  1UTE A;  1SU1 A;  3E7A A;  4H2B A;  3RL5 A;  2Z06 A;  2BDX A;  3RL3 A;  1HO5 A;  3IVD A;  1S95 A;  4JA9 A;  3H64 A;  2QFR A;  5INB A;  1Z2W A;  1NNW A;  1U32 A;  3QG5 C;  1OIE A;  4ORC A;  4ORA A;  4V0X A;  4UWQ A;  3K7W C;  2KKN A;  4G9J A;  1TCO A;  2ZOA A;  3QFK A;  3RL4 A;  3ZU0 A;  2ZO9 B;  1JK7 A;  4DT2 A;  4FBK A;  1M63 A;  4O43 A;  3JYF A;  2Z1A A;  4TUI A;  3QFM A;  4IL1 A;  5J28 A;  1OI8 A;  4O5G A;  3LL8 A;  3H62 B;  2IAE C;  4V0W A;  4YKE A;  5GTU A;  1WAR A;  2NYM C;  4JA7 A;  1MF8 A;  1S3N A;  2WDE A;  3FGA C;  2AHD A;  4B2O A;  3H69 A;  4TUG A;  1XM7 A;  3V4Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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