1S4DA

Crystal structure analysis of the s-adenosyl-l-methionine dependent uroporphyrinogen-iii c-methyltransferase sumt
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
265
structure length
256
Chain Sequence
FAGLPALEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGPSPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDRINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRLRAALDWIGALDGRKLAADP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Uroporphyrin-III C-methyltransferase
publication title Structure/Function Studies on a S-Adenosyl-l-methionine-dependent Uroporphyrinogen III C Methyltransferase (SUMT), a Key Regulatory Enzyme of Tetrapyrrole Biosynthesis
pubmed doi rcsb
source organism Pseudomonas denitrificans
total genus 68
structure length 256
sequence length 265
chains with identical sequence B, D, E, F, G, H, I, J, K, L, M
ec nomenclature ec 2.1.1.107: Uroporphyrinogen-III C-methyltransferase.
pdb deposition date 2004-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 1s4dA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 1s4dA01
2ELEA 2ENIA 2DXWA 2E8SA 2EJZA 2EL2A 2EHLA 2EN5A 5HW4A 2EK2A 1VA0A 1VE2A 2YBOA 2ELDA 2E0KA 3NDCA 3I4TA 2PB5A 2EGSA 2PCMA 3FQ6A 2EL3A 3KWPA 2PB6A 2YBQA 2CBFA 2EL1A 2HUTA 2E0NA 2EJJA 2E8HA 3FFYA 2DXXA 1WNGA 2E4RA 2EMRA 2DV5A 2DSIA 1PJTA 2EJKA 2EK7A 2P9DA 2EMUA 2P6DA 1PJQA 2QBUA 2HUQA 2E16A 2EH4A 2OWVA 2DSHA 2DSGA 2EHCA 2PB4A 3NEIA 2P6LA 2EH5A 3HH1A 2P6IA 3NUTA 1VHVA 2P2XA 2E8QA 2OWUA 2PCHA 2E15A 1V9AA 2PCAA 1WYZA 2EL0A 1CBFA 1PJSA 2P5FA 2DV7A 2EKAA 2DXVA 2EEQA 4E16A 2DEKA 2Z6RA 3ND1A 2DV3A 2P6KA 2PCKA 2EGLA 2E7RA 2E17A 2DV4A 2ZVBA 2E8RA 2ED3A 2NPNA 2OWFA 2EK4A 1VCEA 2HR8A 2EK3A 2E4NA 1S4DA 2OWKA 2EGBA 2P5CA 2E07A 2OWGA 2HUVA 2ED5A 2E08A 2ZVCA 2BB3A 2EH2A 2PCGA 1WDEA 2HUXA 2PCIA
chains in the Genus database with same CATH superfamily
4H4EA 2ELEA 2ENIA 4N7BA 2DXWA 2E8SA 2EJZA 2EL2A 2EHLA 2EN5A 5HW4A 2EK2A 1VA0A 1VE2A 2YBOA 2ELDA 2E0KA 3NDCA 3I4TA 2PB5A 2EGSA 2PCMA 3FQ6A 2EL3A 3KWPA 2PB6A 2KYYA 2YBQA 3KEMA 2CBFA 2EL1A 4MUYA 2HUTA 2E0NA 3SZUA 2EJJA 2E8HA 3FFYA 2DXXA 1WNGA 2E4RA 3F7TA 2EMRA 3KEFA 2DV5A 3SZLA 2DSIA 1PJTA 2EJKA 2EK7A 2P9DA 2EMUA 4MUXA 2P6DA 4MV5A 1PJQA 2QBUA 2HUQA 4EB3A 2E16A 2EH4A 2OWVA 2DSHA 2DSGA 2EHCA 2PB4A 3NEIA 2P6LA 3KELA 3DNFA 3ZGLA 3T0FA 2EH5A 3KE8A 4H4CA 3HH1A 3UTDA 2P6IA 3NUTA 3TIXB 1VHVA 3UV6A 2P2XA 3UTCA 2E8QA 2OWUA 3KE9A 2PCHA 2E15A 1V9AA 2PCAA 1WYZA 2EL0A 1CBFA 1PJSA 2P5FA 2DV7A 2EKAA 2DXVA 3SZOA 2EEQA 4E16A 3T0GA 3LMMA 4H4DA 2DEKA 2Z6RA 3ND1A 2DV3A 2P6KA 4MV0A 2PCKA 2EGLA 2E7RA 2E17A 2DV4A 2ZVBA 2E8RA 2ED3A 3ZGNA 2NPNA 2OWFA 2EK4A 1VCEA 3UWMA 2HR8A 2EK3A 2E4NA 1S4DA 2OWKA 2EGBA 2P5CA 2E07A 2OWGA 2HUVA 2ED5A 2E08A 3URKA 2ZVCA 2BB3A 2EH2A 2PCGA 1WDEA 2HUXA 3UV3A 2PCIA 3UV7A
chains in the Genus database with same CATH topology
4H4EA 2ELEA 2ENIA 4N7BA 2DXWA 2E8SA 2EJZA 2EL2A 2EHLA 2EN5A 5HW4A 2EK2A 1VA0A 1VE2A 2YBOA 2ELDA 2E0KA 3NDCA 3I4TA 2PB5A 2EGSA 2PCMA 3FQ6A 2EL3A 3KWPA 2PB6A 2KYYA 2YBQA 3KEMA 2CBFA 2EL1A 4MUYA 2HUTA 2E0NA 3SZUA 2EJJA 2E8HA 3FFYA 2DXXA 1WNGA 2E4RA 3F7TA 2EMRA 3KEFA 2DV5A 3SZLA 2DSIA 1PJTA 2EJKA 2EK7A 2P9DA 2EMUA 4MUXA 2P6DA 4MV5A 1PJQA 2QBUA 2HUQA 4EB3A 2E16A 2EH4A 2OWVA 2DSHA 2DSGA 2EHCA 2PB4A 3NEIA 2P6LA 3KELA 3DNFA 3ZGLA 3T0FA 2EH5A 3KE8A 4H4CA 3HH1A 3UTDA 2P6IA 3NUTA 3TIXB 1VHVA 3UV6A 2P2XA 3UTCA 2E8QA 2OWUA 3KE9A 2PCHA 2E15A 1V9AA 2PCAA 1WYZA 2EL0A 1CBFA 1PJSA 2P5FA 2DV7A 2EKAA 2DXVA 3SZOA 2EEQA 4E16A 3T0GA 3LMMA 4H4DA 2DEKA 2Z6RA 3ND1A 2DV3A 2P6KA 4MV0A 2PCKA 2EGLA 2E7RA 2E17A 2DV4A 2ZVBA 2E8RA 2ED3A 3ZGNA 2NPNA 2OWFA 2EK4A 1VCEA 3UWMA 2HR8A 2EK3A 2E4NA 1S4DA 2OWKA 2EGBA 2P5CA 2E07A 2OWGA 2HUVA 2ED5A 2E08A 3URKA 2ZVCA 2BB3A 2EH2A 2PCGA 1WDEA 2HUXA 3UV3A 2PCIA 3UV7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ELE A;  2ENI A;  2DXW A;  2E8S A;  2EJZ A;  2EL2 A;  2EHL A;  2EN5 A;  5HW4 A;  2EK2 A;  1VA0 A;  1VE2 A;  2YBO A;  2ELD A;  2E0K A;  3NDC A;  3I4T A;  2PB5 A;  2EGS A;  2PCM A;  3FQ6 A;  2EL3 A;  3KWP A;  2PB6 A;  2YBQ A;  2CBF A;  2EL1 A;  2HUT A;  2E0N A;  2EJJ A;  2E8H A;  3FFY A;  2DXX A;  1WNG A;  2E4R A;  2EMR A;  2DV5 A;  2DSI A;  1PJT A;  2EJK A;  2EK7 A;  2P9D A;  2EMU A;  2P6D A;  1PJQ A;  2QBU A;  2HUQ A;  2E16 A;  2EH4 A;  2OWV A;  2DSH A;  2DSG A;  2EHC A;  2PB4 A;  3NEI A;  2P6L A;  2EH5 A;  3HH1 A;  2P6I A;  3NUT A;  1VHV A;  2P2X A;  2E8Q A;  2OWU A;  2PCH A;  2E15 A;  1V9A A;  2PCA A;  1WYZ A;  2EL0 A;  1CBF A;  1PJS A;  2P5F A;  2DV7 A;  2EKA A;  2DXV A;  2EEQ A;  4E16 A;  2DEK A;  2Z6R A;  3ND1 A;  2DV3 A;  2P6K A;  2PCK A;  2EGL A;  2E7R A;  2E17 A;  2DV4 A;  2ZVB A;  2E8R A;  2ED3 A;  2NPN A;  2OWF A;  2EK4 A;  1VCE A;  2HR8 A;  2EK3 A;  2E4N A;  1S4D A;  2OWK A;  2EGB A;  2P5C A;  2E07 A;  2OWG A;  2HUV A;  2ED5 A;  2E08 A;  2ZVC A;  2BB3 A;  2EH2 A;  2PCG A;  1WDE A;  2HUX A;  2PCI A; 
#chains in the Genus database with same CATH topology
 4H4E A;  2ELE A;  2ENI A;  4N7B A;  2DXW A;  2E8S A;  2EJZ A;  2EL2 A;  2EHL A;  2EN5 A;  5HW4 A;  2EK2 A;  1VA0 A;  1VE2 A;  2YBO A;  2ELD A;  2E0K A;  3NDC A;  3I4T A;  2PB5 A;  2EGS A;  2PCM A;  3FQ6 A;  2EL3 A;  3KWP A;  2PB6 A;  2KYY A;  2YBQ A;  3KEM A;  2CBF A;  2EL1 A;  4MUY A;  2HUT A;  2E0N A;  3SZU A;  2EJJ A;  2E8H A;  3FFY A;  2DXX A;  1WNG A;  2E4R A;  3F7T A;  2EMR A;  3KEF A;  2DV5 A;  3SZL A;  2DSI A;  1PJT A;  2EJK A;  2EK7 A;  2P9D A;  2EMU A;  4MUX A;  2P6D A;  4MV5 A;  1PJQ A;  2QBU A;  2HUQ A;  4EB3 A;  2E16 A;  2EH4 A;  2OWV A;  2DSH A;  2DSG A;  2EHC A;  2PB4 A;  3NEI A;  2P6L A;  3KEL A;  3DNF A;  3ZGL A;  3T0F A;  2EH5 A;  3KE8 A;  4H4C A;  3HH1 A;  3UTD A;  2P6I A;  3NUT A;  3TIX B;  1VHV A;  3UV6 A;  2P2X A;  3UTC A;  2E8Q A;  2OWU A;  3KE9 A;  2PCH A;  2E15 A;  1V9A A;  2PCA A;  1WYZ A;  2EL0 A;  1CBF A;  1PJS A;  2P5F A;  2DV7 A;  2EKA A;  2DXV A;  3SZO A;  2EEQ A;  4E16 A;  3T0G A;  3LMM A;  4H4D A;  2DEK A;  2Z6R A;  3ND1 A;  2DV3 A;  2P6K A;  4MV0 A;  2PCK A;  2EGL A;  2E7R A;  2E17 A;  2DV4 A;  2ZVB A;  2E8R A;  2ED3 A;  3ZGN A;  2NPN A;  2OWF A;  2EK4 A;  1VCE A;  3UWM A;  2HR8 A;  2EK3 A;  2E4N A;  1S4D A;  2OWK A;  2EGB A;  2P5C A;  2E07 A;  2OWG A;  2HUV A;  2ED5 A;  2E08 A;  3URK A;  2ZVC A;  2BB3 A;  2EH2 A;  2PCG A;  1WDE A;  2HUX A;  3UV3 A;  2PCI A;  3UV7 A; 
#chains in the Genus database with same CATH homology
 4H4E A;  2ELE A;  2ENI A;  4N7B A;  2DXW A;  2E8S A;  2EJZ A;  2EL2 A;  2EHL A;  2EN5 A;  5HW4 A;  2EK2 A;  1VA0 A;  1VE2 A;  2YBO A;  2ELD A;  2E0K A;  3NDC A;  3I4T A;  2PB5 A;  2EGS A;  2PCM A;  3FQ6 A;  2EL3 A;  3KWP A;  2PB6 A;  2KYY A;  2YBQ A;  3KEM A;  2CBF A;  2EL1 A;  4MUY A;  2HUT A;  2E0N A;  3SZU A;  2EJJ A;  2E8H A;  3FFY A;  2DXX A;  1WNG A;  2E4R A;  3F7T A;  2EMR A;  3KEF A;  2DV5 A;  3SZL A;  2DSI A;  1PJT A;  2EJK A;  2EK7 A;  2P9D A;  2EMU A;  4MUX A;  2P6D A;  4MV5 A;  1PJQ A;  2QBU A;  2HUQ A;  4EB3 A;  2E16 A;  2EH4 A;  2OWV A;  2DSH A;  2DSG A;  2EHC A;  2PB4 A;  3NEI A;  2P6L A;  3KEL A;  3DNF A;  3ZGL A;  3T0F A;  2EH5 A;  3KE8 A;  4H4C A;  3HH1 A;  3UTD A;  2P6I A;  3NUT A;  3TIX B;  1VHV A;  3UV6 A;  2P2X A;  3UTC A;  2E8Q A;  2OWU A;  3KE9 A;  2PCH A;  2E15 A;  1V9A A;  2PCA A;  1WYZ A;  2EL0 A;  1CBF A;  1PJS A;  2P5F A;  2DV7 A;  2EKA A;  2DXV A;  3SZO A;  2EEQ A;  4E16 A;  3T0G A;  3LMM A;  4H4D A;  2DEK A;  2Z6R A;  3ND1 A;  2DV3 A;  2P6K A;  4MV0 A;  2PCK A;  2EGL A;  2E7R A;  2E17 A;  2DV4 A;  2ZVB A;  2E8R A;  2ED3 A;  3ZGN A;  2NPN A;  2OWF A;  2EK4 A;  1VCE A;  3UWM A;  2HR8 A;  2EK3 A;  2E4N A;  1S4D A;  2OWK A;  2EGB A;  2P5C A;  2E07 A;  2OWG A;  2HUV A;  2ED5 A;  2E08 A;  3URK A;  2ZVC A;  2BB3 A;  2EH2 A;  2PCG A;  1WDE A;  2HUX A;  3UV3 A;  2PCI A;  3UV7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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