1S5LO

Architecture of the photosynthetic oxygen evolving center
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
246
structure length
246
Chain Sequence
AKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
publication title Architecture of the Photosynthetic Oxygen-Evolving Center
pubmed doi rcsb
molecule keywords Photosystem Q(B) protein
total genus 27
structure length 246
sequence length 246
chains with identical sequence o
ec nomenclature
pdb deposition date 2004-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 1s5lO01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 1s5lO02
5B5EO 3KZIO 4UB6O 5KAIO 5KAFO 5H2FO 5G38A 3A0BO 5B66O 5TISO 5G3AA 3A0HO 4PJ0O 4UB8O 5E79O 5GTHO 2AXTO 5GTIO 5G39A 3JCUO 3WU2O 4IL6O 1S5LO
chains in the Genus database with same CATH superfamily
2ODJA 4FMSA 3A2SX 3KZIO 3SYSA 3SZDA 4O3WA 2N2LA 4PR7A 5KAIO 2Y0KA 4RLCA 3SZVA 2XTQA 2PRNA 4FRXA 2GE4A 3QRAA 3VY8X 4U9CA 4XNKA 5G26A 1P4TA 4AYMC 3UU2A 2XE3A 2R89A 4LSFA 1E54A 3PQUA 2WJQA 3VZTX 1BXWA 2IWVA 5DL8A 2JMMA 2X27X 4LSEA 3G7GA 3PGRA 3EMNX 2QTKA 4FUVA 4XNLA 3DWOX 1QJ9A 3PGUA 4K3CA 3WI5A 5ADXK 4O4XA 3LK2B 1MPFA 2Y7SA 3JCUO 4FSPA 3WU2O 2XE1A 3AAEA 4IL6O 4N74A 3AA6B 3DA4A 3T0SA 2FGQX 4AYNA 2R4PA 1ZHZA 3VZUX 2ZFGA 3K19A 4FQEA 1PRNA 4LSIA 4N59A 1IZNB 3PF1A 1GFNA 4QQ1A 2F1TA 2XE2A 4C4VA 2JQYA 2WJRA 4UB6O 3HOLA 4G75A 5KAFO 3TZGA 4RJXA 2N2MA 5DL7A 2LHFA 4FT6A 1G90A 2KZ7B 5ADXL 3UAQA 2WVPA 1GFQA 3RBHA 1PHOA 4AYEC 2ERVA 5GV0A 5JDPA 3AAAA 2MHLA 4O4UA 6PRNA 3AA7B 5G38A 2M07A 3AA1A 4AZLA 4AUIA 4O3YA 4RJWA 5FVNA 3POQA 3UPGA 3NSGA 2FGRA 3V8UA 2Y0LA 1BH3A 1ZHXA 2MNHA 2W80C 2M06A 2Y0HA 3A0HO 2R88A 4D64A 1YS5A 2OMFA 3LK3A 3PRNA 5E79O 2F1VA 3DZMA 5EE2A 2YPVA 2AXTO 2KC0A 4E1SA 3T20A 2R8AA 4K3BA 1BT9A 4E1TA 1S5LO 1ORMA 1QJ8A 2F1CX 3POUA 4D65A 2J4UP 3HW9A 3VE2A 4CTDA 2KXPB 2R4OA 2W81C 3AA0A 4JFBA 4AFKA 4AYID 4C4VB 5IYUA 1MM5A 4C69X 4N58A 5T5FA 4GHBA 1MM4A 7PRNA 3WI4A 1HXXA 3C5OA 1OSMA 3PGSA 5AFUL 3BRYA 5PRNA 4JCHA 4O49A 1GFOA 4O3XB 1Q9FA 1GFMA 4AKMA 3DA3A 4F4BA 3VE1A 2XMXA 2KDYA 3A0BO 4AKRA 5B66O 1OPFA 1GFPA 3VZWX 5TISO 5G3AA 3DWNA 4KRAA 3LK2A 3PORA 3BRZA 4KR8A 4UB8O 4RLBA 4D5UA 1Q9GA 5DL6A 5GTHO 5GTIO 1H6S1 1QJPA 2J1NA 5G39A 4O3ZA 5AFUK 4Z3TA 5DL5A 2R4NA 3JTYA 4B61A 1IZNA 3QRCA 2XE5A 2PORA 3AAEB 3LK42 2K0LA 2X9KA 3SY9A 4C00A 5B5EO 1THQA 3T24A 3POXA 2O4VA 3AA0B 4FOZA 3O0EA 4GCPA 4GF4A 4LSHA 3GP6A 3HWBA 4N75A 2KZ7A 1T16A 2Y2XA 4KR4A 8PRNA 3BS0A 5H2FO 3AA7A 4FSOA 4FESA 3LK41 2XG6A 3HOEA 3KVDD 4GCQA 2XTRA 2YNKA 3AAAB 1HXUA 2ZLDA 5D5DA 4AKRB 3AA1B 3FYXA 2LFUA 3VY9X 2R4LA 4PUXA 3PQSA 4G76A 4PJ0O 3SYBA 3SY7A 1ZHWA 4FRTA 4FZLA 4AYDC 4BUMX 2IWWA 4RL9A 4GCSA 3LK3B 2K4TA 3AA6A 3NJTA 1HXTA 1ZHYA 1ZHTA 4FZNA 2KXPA 4FZMA 1T1LA
chains in the Genus database with same CATH topology
5B5EO 3KZIO 4UB6O 5KAIO 5KAFO 5H2FO 5G38A 3A0BO 5B66O 5TISO 5G3AA 3A0HO 4PJ0O 4UB8O 5E79O 5GTHO 2AXTO 5GTIO 5G39A 3JCUO 3WU2O 4IL6O 1S5LO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5B5E O;  3KZI O;  4UB6 O;  5KAI O;  5KAF O;  5H2F O;  5G38 A;  3A0B O;  5B66 O;  5TIS O;  5G3A A;  3A0H O;  4PJ0 O;  4UB8 O;  5E79 O;  5GTH O;  2AXT O;  5GTI O;  5G39 A;  3JCU O;  3WU2 O;  4IL6 O;  1S5L O; 
#chains in the Genus database with same CATH topology
 2ODJ A;  4FMS A;  3A2S X;  3KZI O;  3SYS A;  3SZD A;  4O3W A;  2N2L A;  4PR7 A;  5KAI O;  2Y0K A;  4RLC A;  3SZV A;  2XTQ A;  2PRN A;  4FRX A;  2GE4 A;  3QRA A;  3VY8 X;  4U9C A;  4XNK A;  5G26 A;  1P4T A;  4AYM C;  3UU2 A;  2XE3 A;  2R89 A;  4LSF A;  1E54 A;  3PQU A;  2WJQ A;  3VZT X;  1BXW A;  2IWV A;  5DL8 A;  2JMM A;  2X27 X;  4LSE A;  3G7G A;  3PGR A;  3EMN X;  2QTK A;  4FUV A;  4XNL A;  3DWO X;  1QJ9 A;  3PGU A;  4K3C A;  3WI5 A;  5ADX K;  4O4X A;  3LK2 B;  1MPF A;  2Y7S A;  3JCU O;  4FSP A;  3WU2 O;  2XE1 A;  3AAE A;  4IL6 O;  4N74 A;  3AA6 B;  3DA4 A;  3T0S A;  2FGQ X;  4AYN A;  2R4P A;  1ZHZ A;  3VZU X;  2ZFG A;  3K19 A;  4FQE A;  1PRN A;  4LSI A;  4N59 A;  1IZN B;  3PF1 A;  1GFN A;  4QQ1 A;  2F1T A;  2XE2 A;  4C4V A;  2JQY A;  2WJR A;  4UB6 O;  3HOL A;  4G75 A;  5KAF O;  3TZG A;  4RJX A;  2N2M A;  5DL7 A;  2LHF A;  4FT6 A;  1G90 A;  2KZ7 B;  5ADX L;  3UAQ A;  2WVP A;  1GFQ A;  3RBH A;  1PHO A;  4AYE C;  2ERV A;  5GV0 A;  5JDP A;  3AAA A;  2MHL A;  4O4U A;  6PRN A;  3AA7 B;  5G38 A;  2M07 A;  3AA1 A;  4AZL A;  4AUI A;  4O3Y A;  4RJW A;  5FVN A;  3POQ A;  3UPG A;  3NSG A;  2FGR A;  3V8U A;  2Y0L A;  1BH3 A;  1ZHX A;  2MNH A;  2W80 C;  2M06 A;  2Y0H A;  3A0H O;  2R88 A;  4D64 A;  1YS5 A;  2OMF A;  3LK3 A;  3PRN A;  5E79 O;  2F1V A;  3DZM A;  5EE2 A;  2YPV A;  2AXT O;  2KC0 A;  4E1S A;  3T20 A;  2R8A A;  4K3B A;  1BT9 A;  4E1T A;  1S5L O;  1ORM A;  1QJ8 A;  2F1C X;  3POU A;  4D65 A;  2J4U P;  3HW9 A;  3VE2 A;  4CTD A;  2KXP B;  2R4O A;  2W81 C;  3AA0 A;  4JFB A;  4AFK A;  4AYI D;  4C4V B;  5IYU A;  1MM5 A;  4C69 X;  4N58 A;  5T5F A;  4GHB A;  1MM4 A;  7PRN A;  3WI4 A;  1HXX A;  3C5O A;  1OSM A;  3PGS A;  5AFU L;  3BRY A;  5PRN A;  4JCH A;  4O49 A;  1GFO A;  4O3X B;  1Q9F A;  1GFM A;  4AKM A;  3DA3 A;  4F4B A;  3VE1 A;  2XMX A;  2KDY A;  3A0B O;  4AKR A;  5B66 O;  1OPF A;  1GFP A;  3VZW X;  5TIS O;  5G3A A;  3DWN A;  4KRA A;  3LK2 A;  3POR A;  3BRZ A;  4KR8 A;  4UB8 O;  4RLB A;  4D5U A;  1Q9G A;  5DL6 A;  5GTH O;  5GTI O;  1H6S 1;  1QJP A;  2J1N A;  5G39 A;  4O3Z A;  5AFU K;  4Z3T A;  5DL5 A;  2R4N A;  3JTY A;  4B61 A;  1IZN A;  3QRC A;  2XE5 A;  2POR A;  3AAE B;  3LK4 2;  2K0L A;  2X9K A;  3SY9 A;  4C00 A;  5B5E O;  1THQ A;  3T24 A;  3POX A;  2O4V A;  3AA0 B;  4FOZ A;  3O0E A;  4GCP A;  4GF4 A;  4LSH A;  3GP6 A;  3HWB A;  4N75 A;  2KZ7 A;  1T16 A;  2Y2X A;  4KR4 A;  8PRN A;  3BS0 A;  5H2F O;  3AA7 A;  4FSO A;  4FES A;  3LK4 1;  2XG6 A;  3HOE A;  3KVD D;  4GCQ A;  2XTR A;  2YNK A;  3AAA B;  1HXU A;  2ZLD A;  5D5D A;  4AKR B;  3AA1 B;  3FYX A;  2LFU A;  3VY9 X;  2R4L A;  4PUX A;  3PQS A;  4G76 A;  4PJ0 O;  3SYB A;  3SY7 A;  1ZHW A;  4FRT A;  4FZL A;  4AYD C;  4BUM X;  2IWW A;  4RL9 A;  4GCS A;  3LK3 B;  2K4T A;  3AA6 A;  3NJT A;  1HXT A;  1ZHY A;  1ZHT A;  4FZN A;  2KXP A;  4FZM A;  1T1L A; 
#chains in the Genus database with same CATH homology
 5B5E O;  3KZI O;  4UB6 O;  5KAI O;  5KAF O;  5H2F O;  5G38 A;  3A0B O;  5B66 O;  5TIS O;  5G3A A;  3A0H O;  4PJ0 O;  4UB8 O;  5E79 O;  5GTH O;  2AXT O;  5GTI O;  5G39 A;  3JCU O;  3WU2 O;  4IL6 O;  1S5L O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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