1S5LO

Architecture of the photosynthetic oxygen evolving center
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
246
structure length
246
Chain Sequence
b'AKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Architecture of the Photosynthetic Oxygen-Evolving Center
pubmed doi rcsb
molecule keywords Photosystem Q(B) protein
molecule tags Photosynthesis
total genus 27
structure length 246
sequence length 246
chains with identical sequence o
ec nomenclature
pdb deposition date 2004-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 1s5lO01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 1s5lO02
4UB6O 2AXTO 5H2FO 3JCUO 5G38A 4IL6O 5GTHO 4UB8O 5G3AA 3A0HO 5KAFO 5B5EO 1S5LO 4PJ0O 5GTIO 5KAIO 5TISO 5G39A 3A0BO 5E79O 3KZIO 3WU2O 5B66O
chains in the Genus database with same CATH superfamily
1MPFA 4UB6O 2O4VA 3T24A 2X9KA 1GFQA 4XNKA 2AXTO 3PGUA 3RBHA 2F1CX 3QRAA 4FRXA 5H2FO 1HXXA 1ZHWA 3A2SX 3JCUO 4FRTA 5G26A 2ZLDA 8PRNA 3WI5A 4RLBA 3VZUX 3POQA 2XTRA 3AA0A 2R89A 3JTYA 4LSIA 1G90A 3AA0B 2Y0LA 4G75A 1OSMA 3PQUA 4K3CA 5IYUA 1T16A 4AKRA 3O0EA 5KAFO 2Y7SA 4FOZA 4AKRB 2KZ7A 4PR7A 4RL9A 3VZWX 5PRNA 1S5LO 2WVPA 2JMMA 5ADXK 2WJRA 4B61A 4FUVA 3DA3A 4N59A 3AA1A 2J1NA 3A0BO 5AFUK 3NJTA 3DWNA 2GE4A 4GF4A 5B66O 5GV0A 2XTQA 4O49A 4E1SA 3PRNA 4KR8A 3KVDD 2XE1A 4FSPA 3LK41 3POXA 3NSGA 3SY9A 3DZMA 1E54A 4F4BA 4O3XB 2KXPA 4AKMA 2XE2A 1ZHXA 2K4TA 4FESA 2FGRA 3SYBA 5G3AA 4AUIA 4AYNA 4RJWA 3PGRA 5DL8A 2JQYA 2MHLA 4N75A 2R8AA 3VE2A 3T0SA 3DWOX 3SZVA 2YNKA 4O3ZA 2ODJA 3LK2A 4PUXA 2R4NA 4AFKA 4C4VA 4PJ0O 1PRNA 1YS5A 2KZ7B 3BRZA 3BRYA 3LK42 3SY7A 3HOLA 3PGSA 5G39A 4AYID 1GFOA 1BXWA 5T5FA 4C00A 3EMNX 2XE5A 2R4LA 1ZHYA 5JDPA 3PQSA 1ZHZA 3POUA 1H6S1 5DL6A 4O4XA 3AA1B 3AA7A 2X27X 3SZDA 4AYEC 2F1TA 4O4UA 3BS0A 4E1TA 1IZNA 1ORMA 1Q9FA 1THQA 2IWVA 2WJQA 4QQ1A 1QJPA 4D65A 4G76A 3G7GA 1HXUA 3HW9A 1GFPA 1BT9A 4O3WA 4UB8O 3VE1A 2YPVA 2N2MA 3AAEA 3VY9X 4AYDC 3UAQA 1QJ8A 3AAEB 3LK3A 1Q9GA 2KXPB 2Y0KA 4FZMA 3SYSA 1ZHTA 4U9CA 1QJ9A 4BUMX 4GCQA 2LHFA 3DA4A 4AZLA 2OMFA 1OPFA 4Z3TA 4KR4A 1BH3A 5B5EO 2M07A 5ADXL 4LSFA 5KAIO 2ZFGA 4RLCA 3LK2B 4GHBA 4FQEA 3K19A 4CTDA 5AFUL 3AAAA 2R4OA 3PORA 3TZGA 2XG6A 3QRCA 3WI4A 4LSHA 1GFMA 3HWBA 4D5UA 1P4TA 1MM4A 4FMSA 4GCSA 5FVNA 1PHOA 3AA7B 4FZLA 4JFBA 4FT6A 4JCHA 1HXTA 2Y2XA 2N2LA 3HOEA 4GCPA 4RJXA 3UU2A 2J4UP 1IZNB 2MNHA 3GP6A 3PF1A 4D64A 5EE2A 3T20A 4KRAA 2PRNA 4N74A 5G38A 4IL6O 2Y0HA 5GTHO 2M06A 5DL7A 4O3YA 2QTKA 2IWWA 6PRNA 3V8UA 3A0HO 3LK3B 4C4VB 2ERVA 2R4PA 1T1LA 4K3BA 2W81C 2XMXA 2W80C 2LFUA 2PORA 4LSEA 3VZTX 4AYMC 5DL5A 5GTIO 2F1VA 2FGQX 4XNLA 4C69X 3AA6A 5TISO 4N58A 3AA6B 3UPGA 2K0LA 2XE3A 1GFNA 2R88A 2KDYA 4FZNA 3FYXA 2KC0A 3C5OA 5D5DA 1MM5A 5E79O 3AAAB 3KZIO 3VY8X 4FSOA 3WU2O 7PRNA
chains in the Genus database with same CATH topology
4UB6O 2AXTO 5H2FO 3JCUO 5G38A 4IL6O 5GTHO 4UB8O 5G3AA 3A0HO 5KAFO 5B5EO 1S5LO 4PJ0O 5GTIO 5KAIO 5TISO 5G39A 3A0BO 5E79O 3KZIO 3WU2O 5B66O
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UB6 O;  2AXT O;  5H2F O;  3JCU O;  5G38 A;  4IL6 O;  5GTH O;  4UB8 O;  5G3A A;  3A0H O;  5KAF O;  5B5E O;  1S5L O;  4PJ0 O;  5GTI O;  5KAI O;  5TIS O;  5G39 A;  3A0B O;  5E79 O;  3KZI O;  3WU2 O;  5B66 O; 
#chains in the Genus database with same CATH topology
 1MPF A;  4UB6 O;  2O4V A;  3T24 A;  2X9K A;  1GFQ A;  4XNK A;  2AXT O;  3PGU A;  3RBH A;  2F1C X;  3QRA A;  4FRX A;  5H2F O;  1HXX A;  1ZHW A;  3A2S X;  3JCU O;  4FRT A;  5G26 A;  2ZLD A;  8PRN A;  3WI5 A;  4RLB A;  3VZU X;  3POQ A;  2XTR A;  3AA0 A;  2R89 A;  3JTY A;  4LSI A;  1G90 A;  3AA0 B;  2Y0L A;  4G75 A;  1OSM A;  3PQU A;  4K3C A;  5IYU A;  1T16 A;  4AKR A;  3O0E A;  5KAF O;  2Y7S A;  4FOZ A;  4AKR B;  2KZ7 A;  4PR7 A;  4RL9 A;  3VZW X;  5PRN A;  1S5L O;  2WVP A;  2JMM A;  5ADX K;  2WJR A;  4B61 A;  4FUV A;  3DA3 A;  4N59 A;  3AA1 A;  2J1N A;  3A0B O;  5AFU K;  3NJT A;  3DWN A;  2GE4 A;  4GF4 A;  5B66 O;  5GV0 A;  2XTQ A;  4O49 A;  4E1S A;  3PRN A;  4KR8 A;  3KVD D;  2XE1 A;  4FSP A;  3LK4 1;  3POX A;  3NSG A;  3SY9 A;  3DZM A;  1E54 A;  4F4B A;  4O3X B;  2KXP A;  4AKM A;  2XE2 A;  1ZHX A;  2K4T A;  4FES A;  2FGR A;  3SYB A;  5G3A A;  4AUI A;  4AYN A;  4RJW A;  3PGR A;  5DL8 A;  2JQY A;  2MHL A;  4N75 A;  2R8A A;  3VE2 A;  3T0S A;  3DWO X;  3SZV A;  2YNK A;  4O3Z A;  2ODJ A;  3LK2 A;  4PUX A;  2R4N A;  4AFK A;  4C4V A;  4PJ0 O;  1PRN A;  1YS5 A;  2KZ7 B;  3BRZ A;  3BRY A;  3LK4 2;  3SY7 A;  3HOL A;  3PGS A;  5G39 A;  4AYI D;  1GFO A;  1BXW A;  5T5F A;  4C00 A;  3EMN X;  2XE5 A;  2R4L A;  1ZHY A;  5JDP A;  3PQS A;  1ZHZ A;  3POU A;  1H6S 1;  5DL6 A;  4O4X A;  3AA1 B;  3AA7 A;  2X27 X;  3SZD A;  4AYE C;  2F1T A;  4O4U A;  3BS0 A;  4E1T A;  1IZN A;  1ORM A;  1Q9F A;  1THQ A;  2IWV A;  2WJQ A;  4QQ1 A;  1QJP A;  4D65 A;  4G76 A;  3G7G A;  1HXU A;  3HW9 A;  1GFP A;  1BT9 A;  4O3W A;  4UB8 O;  3VE1 A;  2YPV A;  2N2M A;  3AAE A;  3VY9 X;  4AYD C;  3UAQ A;  1QJ8 A;  3AAE B;  3LK3 A;  1Q9G A;  2KXP B;  2Y0K A;  4FZM A;  3SYS A;  1ZHT A;  4U9C A;  1QJ9 A;  4BUM X;  4GCQ A;  2LHF A;  3DA4 A;  4AZL A;  2OMF A;  1OPF A;  4Z3T A;  4KR4 A;  1BH3 A;  5B5E O;  2M07 A;  5ADX L;  4LSF A;  5KAI O;  2ZFG A;  4RLC A;  3LK2 B;  4GHB A;  4FQE A;  3K19 A;  4CTD A;  5AFU L;  3AAA A;  2R4O A;  3POR A;  3TZG A;  2XG6 A;  3QRC A;  3WI4 A;  4LSH A;  1GFM A;  3HWB A;  4D5U A;  1P4T A;  1MM4 A;  4FMS A;  4GCS A;  5FVN A;  1PHO A;  3AA7 B;  4FZL A;  4JFB A;  4FT6 A;  4JCH A;  1HXT A;  2Y2X A;  2N2L A;  3HOE A;  4GCP A;  4RJX A;  3UU2 A;  2J4U P;  1IZN B;  2MNH A;  3GP6 A;  3PF1 A;  4D64 A;  5EE2 A;  3T20 A;  4KRA A;  2PRN A;  4N74 A;  5G38 A;  4IL6 O;  2Y0H A;  5GTH O;  2M06 A;  5DL7 A;  4O3Y A;  2QTK A;  2IWW A;  6PRN A;  3V8U A;  3A0H O;  3LK3 B;  4C4V B;  2ERV A;  2R4P A;  1T1L A;  4K3B A;  2W81 C;  2XMX A;  2W80 C;  2LFU A;  2POR A;  4LSE A;  3VZT X;  4AYM C;  5DL5 A;  5GTI O;  2F1V A;  2FGQ X;  4XNL A;  4C69 X;  3AA6 A;  5TIS O;  4N58 A;  3AA6 B;  3UPG A;  2K0L A;  2XE3 A;  1GFN A;  2R88 A;  2KDY A;  4FZN A;  3FYX A;  2KC0 A;  3C5O A;  5D5D A;  1MM5 A;  5E79 O;  3AAA B;  3KZI O;  3VY8 X;  4FSO A;  3WU2 O;  7PRN A; 
#chains in the Genus database with same CATH homology
 4UB6 O;  2AXT O;  5H2F O;  3JCU O;  5G38 A;  4IL6 O;  5GTH O;  4UB8 O;  5G3A A;  3A0H O;  5KAF O;  5B5E O;  1S5L O;  4PJ0 O;  5GTI O;  5KAI O;  5TIS O;  5G39 A;  3A0B O;  5E79 O;  3KZI O;  3WU2 O;  5B66 O; 
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similar chains in the pdb database (?% sequence similarity)

 
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