1S5RB

Solution structure of hbp1 sid-msin3a pah2 complex
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
89
structure length
89
Chain Sequence
SLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords high mobility group box transcription factor 1
publication title HBP1 and Mad1 repressors bind the Sin3 corepressor PAH2 domain with opposite helical orientations.
pubmed doi rcsb
source organism Mus musculus
total genus 22
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2004-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02671 PAH Paired amphipathic helix repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1160.11 Mainly Alpha Up-down Bundle Paired amphipathic helix 2 (pah2 repeat) Paired amphipathic helix 1s5rB00
2F05A 1G1EB 2CZYA 2RMSA 1S5RB 1E91A 1S5QB 2RMRA 2LD7B 1PD7A 2L9SB 2CR7A
chains in the Genus database with same CATH superfamily
2F05A 4YL6A 1S5QB 4YKDA 2L9SB 5F3XA 4YKCA 1PD7A 2RMSA 4Y5OA 1E91A 4FQNA 2RMRA 2LD7B 2CR7A 1G1EB 2CZYA 1S5RB 2KBQA 3K1RA 2LSRA 2KBRA
chains in the Genus database with same CATH topology
2F05A 1G1EB 2CZYA 2RMSA 1S5RB 1E91A 1S5QB 2RMRA 2LD7B 1PD7A 2L9SB 2CR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F05 A;  1G1E B;  2CZY A;  2RMS A;  1S5R B;  1E91 A;  1S5Q B;  2RMR A;  2LD7 B;  1PD7 A;  2L9S B;  2CR7 A; 
#chains in the Genus database with same CATH topology
 2F05 A;  4YL6 A;  1S5Q B;  4YKD A;  2L9S B;  5F3X A;  4YKC A;  1PD7 A;  2RMS A;  4Y5O A;  1E91 A;  4FQN A;  2RMR A;  2LD7 B;  2CR7 A;  1G1E B;  2CZY A;  1S5R B;  2KBQ A;  3K1R A;  2LSR A;  2KBR A; 
#chains in the Genus database with same CATH homology
 2F05 A;  1G1E B;  2CZY A;  2RMS A;  1S5R B;  1E91 A;  1S5Q B;  2RMR A;  2LD7 B;  1PD7 A;  2L9S B;  2CR7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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