1S72E

Refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
Total Genus 37
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Roles of Ribosomal Proteins in the Structure, Assembly and Evolution of the Large Ribosomal Subunit
pubmed doi rcsb
total genus 37
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2004-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1s72E01
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1s72E02
4WFAE 1S72E 1K73G 4WCEE 3J7ZG 1YITE 3OW2E 1KD1G 3CCVE 2OTJE 1Q82G 1YJ9E 1KC8G 1VQ4E 5GAHG 4IOCE 3G71E 3G4SE 3CCJE 3PIOE 2ZJPE 3I56E 3CXCE 5AN9B 1KQSE 4WF9E 3CC2E 1M1KG 1VQ9E 1VQME 3CC7E 3CCQE 2QA4E 4WFNE 5H1SI 3CD6E 1YHQE 2ZJQE 1QVGE 3CPWE 4WFBE 1VQ8E 5GAGG 1W2BE 3CCRE 4IO9E 3CCEE 1N8RG 4IOAE 2OTLE 3CF5E 1YI2E 3CCSE 1M90G 3G6EE 1K8AG 3CMAE 1VQKE 1VQNE 1RL6A 3CCUE 2ZJRE 5DM7E 1JJ2E 5DM6E 5JVHE 1VQOE 1VQ7E 3CCME 1YJNE 3CC4E 1VQ6E 4U67E 1YJWE 1VQ5E 3CCLE 3DLLE 1Q81G 1VQLE 1VQPE 5HL7E 3CMEE 1NJIG 3I55E 4UY8G 1Q7YG 5GAEG 2QEXE 1QVFE 3PIPE 1YIJE 1Q86G 1K9MG 5JVGE 5GADG 5MLCH 2CQLA
chains in the Genus database with same CATH superfamily
4WFAE 1S72E 1K73G 5B10O 3J7ZG 4WCEE 1YITE 3OW2E 1KD1G 2OY8A 2AF5A 3CCVE 2OTJE 1Q82G 1YJ9E 1KC8G 1VQ4E 5GAHG 4IOCE 3G71E 3G4SE 3IGEA 3PIOE 3CCJE 2ZJPE 3I56E 3CXCE 5AN9B 1RJLC 2OY1O 1KQSE 4WF9E 3CC2E 1M1KG 1P4PA 1VQ9E 1VQME 3CC7E 3CCQE 2QA4E 2FKJA 4WFNE 5H1SI 3IG9A 3CD6E 1FJ1E 3CKFA 1YHQE 2ZJQE 1QVGE 3CPWE 4WFBE 1VQ8E 3AUMO 5B11O 5GAGG 1W2BE 3CCRE 2I5ZO 4IO9E 2G8CO 3CKGA 3CCEE 1N8RG 4IOAE 2OL7A 2FKGA 2OTLE 3CF5E 1YI2E 3CCSE 1M90G 3G6EE 1K8AG 3CMAE 1VQKE 1VQNE 1RL6A 3CCUE 2ZJRE 5DM7E 1JJ2E 5DM6E 5JVHE 2OY7A 1VQOE 1VQ7E 3CCME 3EC5A 1YJNE 3CC4E 1VQ6E 4U67E 1YJWE 2OL8O 1VQ5E 3CCLE 2OYBO 3DLLE 1Q81G 1VQLE 1VQPE 2OL6O 5HL7E 3CMEE 1OSPO 1NJIG 3I55E 4UY8G 1Q7YG 2I5VO 5B2AO 5GAEG 5B3MO 2OY5O 2QEXE 2PI3O 1QVFE 3PIPE 1YIJE 1Q86G 1K9MG 5JVGE 5GADG 5MLCH 2CQLA 2HKDA
chains in the Genus database with same CATH topology
4WFAE 1S72E 1K73G 4WCEE 3J7ZG 1YITE 3OW2E 1KD1G 3CCVE 2OTJE 1Q82G 1YJ9E 1KC8G 1VQ4E 5GAHG 4IOCE 3G71E 3G4SE 3CCJE 3PIOE 2ZJPE 3I56E 3CXCE 5AN9B 1KQSE 4WF9E 3CC2E 1M1KG 1VQ9E 1VQME 3CC7E 3CCQE 2QA4E 4WFNE 5H1SI 3CD6E 1YHQE 2ZJQE 1QVGE 3CPWE 4WFBE 1VQ8E 5GAGG 1W2BE 3CCRE 4IO9E 3CCEE 1N8RG 4IOAE 2OTLE 3CF5E 1YI2E 3CCSE 1M90G 3G6EE 1K8AG 3CMAE 1VQKE 1VQNE 1RL6A 3CCUE 2ZJRE 5DM7E 1JJ2E 5DM6E 5JVHE 1VQOE 1VQ7E 3CCME 1YJNE 3CC4E 1VQ6E 4U67E 1YJWE 1VQ5E 3CCLE 3DLLE 1Q81G 1VQLE 1VQPE 5HL7E 3CMEE 1NJIG 3I55E 4UY8G 1Q7YG 5GAEG 2QEXE 1QVFE 3PIPE 1YIJE 1Q86G 1K9MG 5JVGE 5GADG 5MLCH 2CQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFA E;  1S72 E;  1K73 G;  4WCE E;  3J7Z G;  1YIT E;  3OW2 E;  1KD1 G;  3CCV E;  2OTJ E;  1Q82 G;  1YJ9 E;  1KC8 G;  1VQ4 E;  5GAH G;  4IOC E;  3G71 E;  3G4S E;  3CCJ E;  3PIO E;  2ZJP E;  3I56 E;  3CXC E;  5AN9 B;  1KQS E;  4WF9 E;  3CC2 E;  1M1K G;  1VQ9 E;  1VQM E;  3CC7 E;  3CCQ E;  2QA4 E;  4WFN E;  5H1S I;  3CD6 E;  1YHQ E;  2ZJQ E;  1QVG E;  3CPW E;  4WFB E;  1VQ8 E;  5GAG G;  1W2B E;  3CCR E;  4IO9 E;  3CCE E;  1N8R G;  4IOA E;  2OTL E;  3CF5 E;  1YI2 E;  3CCS E;  1M90 G;  3G6E E;  1K8A G;  3CMA E;  1VQK E;  1VQN E;  1RL6 A;  3CCU E;  2ZJR E;  5DM7 E;  1JJ2 E;  5DM6 E;  5JVH E;  1VQO E;  1VQ7 E;  3CCM E;  1YJN E;  3CC4 E;  1VQ6 E;  4U67 E;  1YJW E;  1VQ5 E;  3CCL E;  3DLL E;  1Q81 G;  1VQL E;  1VQP E;  5HL7 E;  3CME E;  1NJI G;  3I55 E;  4UY8 G;  1Q7Y G;  5GAE G;  2QEX E;  1QVF E;  3PIP E;  1YIJ E;  1Q86 G;  1K9M G;  5JVG E;  5GAD G;  5MLC H;  2CQL A; 
#chains in the Genus database with same CATH topology
 4WFA E;  1S72 E;  1K73 G;  5B10 O;  3J7Z G;  4WCE E;  1YIT E;  3OW2 E;  1KD1 G;  2OY8 A;  2AF5 A;  3CCV E;  2OTJ E;  1Q82 G;  1YJ9 E;  1KC8 G;  1VQ4 E;  5GAH G;  4IOC E;  3G71 E;  3G4S E;  3IGE A;  3PIO E;  3CCJ E;  2ZJP E;  3I56 E;  3CXC E;  5AN9 B;  1RJL C;  2OY1 O;  1KQS E;  4WF9 E;  3CC2 E;  1M1K G;  1P4P A;  1VQ9 E;  1VQM E;  3CC7 E;  3CCQ E;  2QA4 E;  2FKJ A;  4WFN E;  5H1S I;  3IG9 A;  3CD6 E;  1FJ1 E;  3CKF A;  1YHQ E;  2ZJQ E;  1QVG E;  3CPW E;  4WFB E;  1VQ8 E;  3AUM O;  5B11 O;  5GAG G;  1W2B E;  3CCR E;  2I5Z O;  4IO9 E;  2G8C O;  3CKG A;  3CCE E;  1N8R G;  4IOA E;  2OL7 A;  2FKG A;  2OTL E;  3CF5 E;  1YI2 E;  3CCS E;  1M90 G;  3G6E E;  1K8A G;  3CMA E;  1VQK E;  1VQN E;  1RL6 A;  3CCU E;  2ZJR E;  5DM7 E;  1JJ2 E;  5DM6 E;  5JVH E;  2OY7 A;  1VQO E;  1VQ7 E;  3CCM E;  3EC5 A;  1YJN E;  3CC4 E;  1VQ6 E;  4U67 E;  1YJW E;  2OL8 O;  1VQ5 E;  3CCL E;  2OYB O;  3DLL E;  1Q81 G;  1VQL E;  1VQP E;  2OL6 O;  5HL7 E;  3CME E;  1OSP O;  1NJI G;  3I55 E;  4UY8 G;  1Q7Y G;  2I5V O;  5B2A O;  5GAE G;  5B3M O;  2OY5 O;  2QEX E;  2PI3 O;  1QVF E;  3PIP E;  1YIJ E;  1Q86 G;  1K9M G;  5JVG E;  5GAD G;  5MLC H;  2CQL A;  2HKD A; 
#chains in the Genus database with same CATH homology
 4WFA E;  1S72 E;  1K73 G;  4WCE E;  3J7Z G;  1YIT E;  3OW2 E;  1KD1 G;  3CCV E;  2OTJ E;  1Q82 G;  1YJ9 E;  1KC8 G;  1VQ4 E;  5GAH G;  4IOC E;  3G71 E;  3G4S E;  3CCJ E;  3PIO E;  2ZJP E;  3I56 E;  3CXC E;  5AN9 B;  1KQS E;  4WF9 E;  3CC2 E;  1M1K G;  1VQ9 E;  1VQM E;  3CC7 E;  3CCQ E;  2QA4 E;  4WFN E;  5H1S I;  3CD6 E;  1YHQ E;  2ZJQ E;  1QVG E;  3CPW E;  4WFB E;  1VQ8 E;  5GAG G;  1W2B E;  3CCR E;  4IO9 E;  3CCE E;  1N8R G;  4IOA E;  2OTL E;  3CF5 E;  1YI2 E;  3CCS E;  1M90 G;  3G6E E;  1K8A G;  3CMA E;  1VQK E;  1VQN E;  1RL6 A;  3CCU E;  2ZJR E;  5DM7 E;  1JJ2 E;  5DM6 E;  5JVH E;  1VQO E;  1VQ7 E;  3CCM E;  1YJN E;  3CC4 E;  1VQ6 E;  4U67 E;  1YJW E;  1VQ5 E;  3CCL E;  3DLL E;  1Q81 G;  1VQL E;  1VQP E;  5HL7 E;  3CME E;  1NJI G;  3I55 E;  4UY8 G;  1Q7Y G;  5GAE G;  2QEX E;  1QVF E;  3PIP E;  1YIJ E;  1Q86 G;  1K9M G;  5JVG E;  5GAD G;  5MLC H;  2CQL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...