1SAVA

Human annexin v with proline substitution by thioproline
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
316
structure length
311
Chain Sequence
QVLRGTVTDFGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSELTGKFEKLIVALMKSRLYDAYELKHALKGAGTNEKVLTEIIASRTEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDDAGIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRKVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Calcium/phospholipid binding
molecule keywords ANNEXIN V
publication title Crystal and molecular structure of human annexin V after refinement. Implications for structure, membrane binding and ion channel formation of the annexin family of proteins.
pubmed doi rcsb
source organism Homo sapiens
total genus 119
structure length 311
sequence length 316
ec nomenclature
pdb deposition date 1997-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1savA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1savA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1savA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 1savA03
1N42A 1ANXA 2HYVA 1AOWA 2IE7A 1BC1A 2ZHIA 4MDVA 1W3WA 1HVFA 1AEIA 1HAKA 2ZOCA 4MDUA 2XO2A 1AIIA 4EVFA 1AXNA 1BC0A 1A8AA 1DM5A 1G5NA 2IE6A 1YJ0A 2H0KA 1N00A 2HYUA 1AVHA 1W45A 1BC3A 2H0LA 1BO9A 1I4AA 1BCZA 1HVGA 2II2A 1XJLA 1A8BA 1HVEA 1N44A 1MCXA 2IICA 1BCYA 1HVDA 1AVRA 2HYWA 1YIIA 4EVHA 2RANA 1W7BA 1ANNA 1AVCA 1ALAA 1BCWA 1SAVA 1HM6A 1N41A 1DK5A 2Q4CA 4HREA 1ANWA 2H0MA 3BRXA 1M9IA 4X9PA 1YCNA 2XO3A 2ZHJA
chains in the Genus database with same CATH superfamily
1ANXA 4C7PA 4MDUA 1G5NA 1BC9A 1QC7A 2HYUA 3USYA 1W45A 4C0AA 1BC3A 1KU1A 1BCZA 1HVGA 2II2A 1XJLA 1R8QE 3ABRA 3SWVA 1XSZA 1AVCA 1BCWA 1N41A 1DK5A 2Q4CA 2H0MA 4D7RA 1AOWA 2IE7A 1W3WA 1AEIA 1BC0A 2IE6A 4JWLA 4KMUX 2H0LA 3AO0A 1A8BA 3TW5A 2HYWA 4EVHA 3L8NA 2RANA 4FHRB 1W7BA 1YGMA 4L5MA 1ALAA 1SAVA 1HM6A 4JMOA 3BRXA 1C1KA 2ZHJA 1N42A 2HYVA 1PBVA 4MDVA 1BC1A 1S9DE 1HAKA 2QEZA 1AIIA 1AXNA 1A8AA 1XT0B 1R8ME 4JXHA 3USWA 1AVHA 4FQ0C 1Q8DA 1HVEA 1UPTB 1BCYA 1HVDA 3ABQA 4D7QA 1ANNA 2HSNA 3ANYA 2OY9A 2R0DA 4Q2SA 3ABSA 1M9IA 2XO3A 1LKVX 2ZHIA 1HVFA 2ZOCA 3LTLA 4EVFA 2XO2A 3SOHB 2VXGA 1DM5A 3HJLA 4A4PA 1YJ0A 2H0KA 1N00A 4OIYA 3AJCA 2K6XA 4KN7X 1BO9A 1I4AA 1R4AE 1N44A 1MCXA 2IICA 1AVRA 4JK1X 1YIIA 4KN4X 1RE0B 2R09A 1R8SE 4HREA 1ANWA 4JMIA 4Z21A 4X9PA 1YCNA 3ABOA
chains in the Genus database with same CATH topology
1N42A 1ANXA 2HYVA 1AOWA 2IE7A 1BC1A 2ZHIA 4MDVA 1W3WA 1HVFA 1AEIA 1HAKA 2ZOCA 4MDUA 2XO2A 1AIIA 4EVFA 1AXNA 1BC0A 1A8AA 1DM5A 1G5NA 2IE6A 1YJ0A 2H0KA 1N00A 2HYUA 1AVHA 1W45A 1BC3A 2H0LA 1BO9A 1I4AA 1BCZA 1HVGA 2II2A 1XJLA 1A8BA 1HVEA 1N44A 1MCXA 2IICA 1BCYA 1HVDA 1AVRA 2HYWA 1YIIA 4EVHA 2RANA 1W7BA 1ANNA 1AVCA 1ALAA 1BCWA 1SAVA 1HM6A 1N41A 1DK5A 2Q4CA 4HREA 1ANWA 2H0MA 3BRXA 1M9IA 4X9PA 1YCNA 2XO3A 2ZHJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N42 A;  1ANX A;  2HYV A;  1AOW A;  2IE7 A;  1BC1 A;  2ZHI A;  4MDV A;  1W3W A;  1HVF A;  1AEI A;  1HAK A;  2ZOC A;  4MDU A;  2XO2 A;  1AII A;  4EVF A;  1AXN A;  1BC0 A;  1A8A A;  1DM5 A;  1G5N A;  2IE6 A;  1YJ0 A;  2H0K A;  1N00 A;  2HYU A;  1AVH A;  1W45 A;  1BC3 A;  2H0L A;  1BO9 A;  1I4A A;  1BCZ A;  1HVG A;  2II2 A;  1XJL A;  1A8B A;  1HVE A;  1N44 A;  1MCX A;  2IIC A;  1BCY A;  1HVD A;  1AVR A;  2HYW A;  1YII A;  4EVH A;  2RAN A;  1W7B A;  1ANN A;  1AVC A;  1ALA A;  1BCW A;  1SAV A;  1HM6 A;  1N41 A;  1DK5 A;  2Q4C A;  4HRE A;  1ANW A;  2H0M A;  3BRX A;  1M9I A;  4X9P A;  1YCN A;  2XO3 A;  2ZHJ A; 
#chains in the Genus database with same CATH topology
 1ANX A;  4C7P A;  4MDU A;  1G5N A;  1BC9 A;  1QC7 A;  2HYU A;  3USY A;  1W45 A;  4C0A A;  1BC3 A;  1KU1 A;  1BCZ A;  1HVG A;  2II2 A;  1XJL A;  1R8Q E;  3ABR A;  3SWV A;  1XSZ A;  1AVC A;  1BCW A;  1N41 A;  1DK5 A;  2Q4C A;  2H0M A;  4D7R A;  1AOW A;  2IE7 A;  1W3W A;  1AEI A;  1BC0 A;  2IE6 A;  4JWL A;  4KMU X;  2H0L A;  3AO0 A;  1A8B A;  3TW5 A;  2HYW A;  4EVH A;  3L8N A;  2RAN A;  4FHR B;  1W7B A;  1YGM A;  4L5M A;  1ALA A;  1SAV A;  1HM6 A;  4JMO A;  3BRX A;  1C1K A;  2ZHJ A;  1N42 A;  2HYV A;  1PBV A;  4MDV A;  1BC1 A;  1S9D E;  1HAK A;  2QEZ A;  1AII A;  1AXN A;  1A8A A;  1XT0 B;  1R8M E;  4JXH A;  3USW A;  1AVH A;  4FQ0 C;  1Q8D A;  1HVE A;  1UPT B;  1BCY A;  1HVD A;  3ABQ A;  4D7Q A;  1ANN A;  2HSN A;  3ANY A;  2OY9 A;  2R0D A;  4Q2S A;  3ABS A;  1M9I A;  2XO3 A;  1LKV X;  2ZHI A;  1HVF A;  2ZOC A;  3LTL A;  4EVF A;  2XO2 A;  3SOH B;  2VXG A;  1DM5 A;  3HJL A;  4A4P A;  1YJ0 A;  2H0K A;  1N00 A;  4OIY A;  3AJC A;  2K6X A;  4KN7 X;  1BO9 A;  1I4A A;  1R4A E;  1N44 A;  1MCX A;  2IIC A;  1AVR A;  4JK1 X;  1YII A;  4KN4 X;  1RE0 B;  2R09 A;  1R8S E;  4HRE A;  1ANW A;  4JMI A;  4Z21 A;  4X9P A;  1YCN A;  3ABO A; 
#chains in the Genus database with same CATH homology
 1N42 A;  1ANX A;  2HYV A;  1AOW A;  2IE7 A;  1BC1 A;  2ZHI A;  4MDV A;  1W3W A;  1HVF A;  1AEI A;  1HAK A;  2ZOC A;  4MDU A;  2XO2 A;  1AII A;  4EVF A;  1AXN A;  1BC0 A;  1A8A A;  1DM5 A;  1G5N A;  2IE6 A;  1YJ0 A;  2H0K A;  1N00 A;  2HYU A;  1AVH A;  1W45 A;  1BC3 A;  2H0L A;  1BO9 A;  1I4A A;  1BCZ A;  1HVG A;  2II2 A;  1XJL A;  1A8B A;  1HVE A;  1N44 A;  1MCX A;  2IIC A;  1BCY A;  1HVD A;  1AVR A;  2HYW A;  1YII A;  4EVH A;  2RAN A;  1W7B A;  1ANN A;  1AVC A;  1ALA A;  1BCW A;  1SAV A;  1HM6 A;  1N41 A;  1DK5 A;  2Q4C A;  4HRE A;  1ANW A;  2H0M A;  3BRX A;  1M9I A;  4X9P A;  1YCN A;  2XO3 A;  2ZHJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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