1SB7A

Crystal structure of the e.coli pseudouridine synthase trud
Total Genus 101
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
342
structure length
342
Chain Sequence
HMIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords tRNA pseudouridine synthase D
publication title Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 101
structure length 342
sequence length 342
chains with identical sequence B
ec nomenclature ec 5.4.99.27: tRNA pseudouridine(13) synthase.
pdb deposition date 2004-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01142 TruD tRNA pseudouridine synthase D (TruD)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2340.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase tRNA pseudouridine synthase TruD 1sb7A02
3.30.2350.20 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1sb7A01
1SZWA 1SB7A 1Z2ZA 1SI7A
chains in the Genus database with same CATH superfamily
3U28A 1K8WA 1Z2ZA 1PRZA 3LWVA 1SZWA 1R3EA 1ZE1A 1ZL3A 1SGVA 2APOA 3HJYA 3LWQA 1XPIA 2I82A 1V9FA 3HAXA 2AUSA 1SB7A 3UAIA 4LABA 3HJWA 1QYUA 3MQKA 1KSVA 2EY4A 2RFKA 1SI7A 1KSLA 4LGTA 3DH3A 2AB4A 3LWOA 2HVYA 1ZE2A 3LWPA 1KSKA 3LWRA 2ISTA 1V9KA 1R3FA
chains in the Genus database with same CATH topology
3U28A 1K8WA 1Z2ZA 1PRZA 3LWVA 1SZWA 1R3EA 1ZE1A 1ZL3A 1SGVA 2APOA 3HJYA 3LWQA 1XPIA 2I82A 1V9FA 3HAXA 2AUSA 1SB7A 3UAIA 4LABA 3HJWA 1QYUA 3MQKA 1KSVA 2EY4A 2RFKA 1SI7A 1KSLA 4LGTA 3DH3A 2AB4A 3LWOA 2HVYA 1ZE2A 3LWPA 1KSKA 3LWRA 2ISTA 1V9KA 1R3FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SZW A;  1SB7 A;  1Z2Z A;  1SI7 A; 
#chains in the Genus database with same CATH topology
 3U28 A;  1K8W A;  1Z2Z A;  1PRZ A;  3LWV A;  1SZW A;  1R3E A;  1ZE1 A;  1ZL3 A;  1SGV A;  2APO A;  3HJY A;  3LWQ A;  1XPI A;  2I82 A;  1V9F A;  3HAX A;  2AUS A;  1SB7 A;  3UAI A;  4LAB A;  3HJW A;  1QYU A;  3MQK A;  1KSV A;  2EY4 A;  2RFK A;  1SI7 A;  1KSL A;  4LGT A;  3DH3 A;  2AB4 A;  3LWO A;  2HVY A;  1ZE2 A;  3LWP A;  1KSK A;  3LWR A;  2IST A;  1V9K A;  1R3F A; 
#chains in the Genus database with same CATH homology
 3U28 A;  1K8W A;  1Z2Z A;  1PRZ A;  3LWV A;  1SZW A;  1R3E A;  1ZE1 A;  1ZL3 A;  1SGV A;  2APO A;  3HJY A;  3LWQ A;  1XPI A;  2I82 A;  1V9F A;  3HAX A;  2AUS A;  1SB7 A;  3UAI A;  4LAB A;  3HJW A;  1QYU A;  3MQK A;  1KSV A;  2EY4 A;  2RFK A;  1SI7 A;  1KSL A;  4LGT A;  3DH3 A;  2AB4 A;  3LWO A;  2HVY A;  1ZE2 A;  3LWP A;  1KSK A;  3LWR A;  2IST A;  1V9K A;  1R3F A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...