1SBOA

Solution structure of putative anti sigma factor antagonist from thermotoga maritima (tm1442)
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
110
structure length
110
Chain Sequence
MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative anti-sigma factor antagonist TM1442
publication title Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states.
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Structural genomics, unknown function
total genus 31
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2004-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1sboA00
1H4ZA 2KA5A 2VY9A 1VC1A 3OIZA 5EZBA 5EUWA 4XS5A 1TILB 3OIRA 4HYLA 1T6RA 4QTPA 5EUXA 5EUSA 3ZXNA 2KLNA 3MGLA 4DGFA 3ZTBA 5EUZA 3T6OA 1BUZA 1H4YA 1SBOA 5EUUA 3IH8A 3IH9A 3LKLA 3AGEA 4DGHA 3IHBA 3LLOA 1TH8B 1AUZA 3IHAA 1H4XA 3NY7A 1THNB 1TIDB 3F43A 3AGDA 3IF5A
chains in the Genus database with same CATH superfamily
1WXXA 1FC6A 1VC1A 2CWWA 3EH7A 5EUWA 3GK7A 3OIRA 4HYLA 5EUXA 3ZXNA 1K32A 3C0KA 3MGLA 3GVKA 3IH8A 3IH9A 4DGHA 3LLOA 3DUPA 3IF5A 4JC0A 3GVJA 1H4ZA 2VY9A 1FCFA 3DJAA 2KLNA 4AE2A 1HF2A 1N6FA 3ZTBA 3T6OA 1BUZA 1H4YA 5EUUA 1N6DA 3DORA 3GVLA 1BPLA 3D3UA 1TIDB 4L8KA 1V0FA 5EZBA 1J7XA 4L1CA 1T6RA 4QTPA 3GMFA 4DMGA 2RRLA 4DGFA 1FC9A 2B78A 5EUZA 1SBOA 3D03A 3LKLA 3AGEA 1TH8B 1AUZA 2ZO9B 3V97A 1FC7A 4GHNA 3NY7A 1WXWA 3QDQA 3JU4A 2OASA 2DXNA 2DXLA 3V8VA 4HIZA 2AS0A 3VSEA 2KA5A 3OIZA 4XS5A 1TILB 5EUSA 3K50A 3AGDA 3MOGA 1N6EA 1V0EA 1H4XA 2ZOAA 3GHFA 3LDFA 1THNB 3F43A 4AEJA 3IHBA 3IHAA
chains in the Genus database with same CATH topology
1H4ZA 2KA5A 2VY9A 1VC1A 3OIZA 5EZBA 5EUWA 4XS5A 1TILB 3OIRA 4HYLA 1T6RA 4QTPA 5EUXA 5EUSA 3ZXNA 2KLNA 3MGLA 4DGFA 3ZTBA 5EUZA 3T6OA 1BUZA 1H4YA 1SBOA 5EUUA 3IH8A 3IH9A 3LKLA 3AGEA 4DGHA 3IHBA 3LLOA 1TH8B 1AUZA 3IHAA 1H4XA 3NY7A 1THNB 1TIDB 3F43A 3AGDA 3IF5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H4Z A;  2KA5 A;  2VY9 A;  1VC1 A;  3OIZ A;  5EZB A;  5EUW A;  4XS5 A;  1TIL B;  3OIR A;  4HYL A;  1T6R A;  4QTP A;  5EUX A;  5EUS A;  3ZXN A;  2KLN A;  3MGL A;  4DGF A;  3ZTB A;  5EUZ A;  3T6O A;  1BUZ A;  1H4Y A;  1SBO A;  5EUU A;  3IH8 A;  3IH9 A;  3LKL A;  3AGE A;  4DGH A;  3IHB A;  3LLO A;  1TH8 B;  1AUZ A;  3IHA A;  1H4X A;  3NY7 A;  1THN B;  1TID B;  3F43 A;  3AGD A;  3IF5 A; 
#chains in the Genus database with same CATH topology
 1WXX A;  1FC6 A;  1VC1 A;  2CWW A;  3EH7 A;  5EUW A;  3GK7 A;  3OIR A;  4HYL A;  5EUX A;  3ZXN A;  1K32 A;  3C0K A;  3MGL A;  3GVK A;  3IH8 A;  3IH9 A;  4DGH A;  3LLO A;  3DUP A;  3IF5 A;  4JC0 A;  3GVJ A;  1H4Z A;  2VY9 A;  1FCF A;  3DJA A;  2KLN A;  4AE2 A;  1HF2 A;  1N6F A;  3ZTB A;  3T6O A;  1BUZ A;  1H4Y A;  5EUU A;  1N6D A;  3DOR A;  3GVL A;  1BPL A;  3D3U A;  1TID B;  4L8K A;  1V0F A;  5EZB A;  1J7X A;  4L1C A;  1T6R A;  4QTP A;  3GMF A;  4DMG A;  2RRL A;  4DGF A;  1FC9 A;  2B78 A;  5EUZ A;  1SBO A;  3D03 A;  3LKL A;  3AGE A;  1TH8 B;  1AUZ A;  2ZO9 B;  3V97 A;  1FC7 A;  4GHN A;  3NY7 A;  1WXW A;  3QDQ A;  3JU4 A;  2OAS A;  2DXN A;  2DXL A;  3V8V A;  4HIZ A;  2AS0 A;  3VSE A;  2KA5 A;  3OIZ A;  4XS5 A;  1TIL B;  5EUS A;  3K50 A;  3AGD A;  3MOG A;  1N6E A;  1V0E A;  1H4X A;  2ZOA A;  3GHF A;  3LDF A;  1THN B;  3F43 A;  4AEJ A;  3IHB A;  3IHA A; 
#chains in the Genus database with same CATH homology
 1H4Z A;  2KA5 A;  2VY9 A;  1VC1 A;  3OIZ A;  5EZB A;  5EUW A;  4XS5 A;  1TIL B;  3OIR A;  4HYL A;  1T6R A;  4QTP A;  5EUX A;  5EUS A;  3ZXN A;  2KLN A;  3MGL A;  4DGF A;  3ZTB A;  5EUZ A;  3T6O A;  1BUZ A;  1H4Y A;  1SBO A;  5EUU A;  3IH8 A;  3IH9 A;  3LKL A;  3AGE A;  4DGH A;  3IHB A;  3LLO A;  1TH8 B;  1AUZ A;  3IHA A;  1H4X A;  3NY7 A;  1THN B;  1TID B;  3F43 A;  3AGD A;  3IF5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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