1SBOA

Solution structure of putative anti sigma factor antagonist from thermotoga maritima (tm1442)
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
110
structure length
110
Chain Sequence
b'MNNLKLDIVEQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESISRILKLTHLDKIFKITDTVEEA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative anti-sigma factor antagonist TM1442
publication title Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states.
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Structural genomics, unknown function
total genus 31
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2004-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01740 STAS STAS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.24 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA STAS domain 1sboA00
3OIZA 3IH8A 3OIRA 1TIDB 1SBOA 3IHAA 1T6RA 3LLOA 1H4YA 1VC1A 3F43A 3IH9A 2VY9A 2KA5A 5EUXA 1TH8B 2KLNA 4DGFA 4DGHA 4XS5A 1BUZA 3T6OA 3IF5A 3LKLA 5EZBA 5EUSA 1H4XA 5EUWA 3AGEA 1THNB 4QTPA 5EUUA 1AUZA 4HYLA 3ZTBA 3AGDA 5EUZA 1H4ZA 3MGLA 3ZXNA 3NY7A 3IHBA 1TILB
chains in the Genus database with same CATH superfamily
1H4YA 2RRLA 3GHFA 3GVLA 4DGHA 3EH7A 3IF5A 3LKLA 3QDQA 3D03A 1THNB 4HYLA 1H4ZA 3D3UA 3MOGA 3IH8A 3OIRA 3LLOA 3IH9A 2KA5A 4GHNA 1K32A 4DGFA 2B78A 1FC6A 4L1CA 4AEJA 2DXLA 5EUSA 4L8KA 5EUWA 3K50A 3JU4A 1J7XA 3ZTBA 3C0KA 3LDFA 3AGDA 5EUZA 3ZXNA 2AS0A 4AE2A 3OIZA 1WXWA 1TIDB 2OASA 3DJAA 1VC1A 1TH8B 2KLNA 1BUZA 3T6OA 4HIZA 3DORA 1H4XA 1V0FA 3V97A 2CWWA 3AGEA 4JC0A 3GVKA 1FCFA 1HF2A 1N6EA 3GK7A 1TILB 3GVJA 1SBOA 3IHAA 1T6RA 1V0EA 3F43A 2VY9A 1BPLA 4DMGA 5EUXA 4XS5A 3VSEA 1WXXA 3GMFA 2ZO9B 5EZBA 1N6DA 4QTPA 5EUUA 1AUZA 2ZOAA 3V8VA 1FC7A 2DXNA 1N6FA 1FC9A 3MGLA 3DUPA 3NY7A 3IHBA
chains in the Genus database with same CATH topology
3OIZA 3IH8A 3OIRA 1TIDB 1SBOA 3IHAA 1T6RA 3LLOA 1H4YA 1VC1A 3F43A 3IH9A 2VY9A 2KA5A 5EUXA 1TH8B 2KLNA 4DGFA 4DGHA 4XS5A 1BUZA 3T6OA 3IF5A 3LKLA 5EZBA 5EUSA 1H4XA 5EUWA 3AGEA 1THNB 4QTPA 5EUUA 1AUZA 4HYLA 3ZTBA 3AGDA 5EUZA 1H4ZA 3MGLA 3ZXNA 3NY7A 3IHBA 1TILB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OIZ A;  3IH8 A;  3OIR A;  1TID B;  1SBO A;  3IHA A;  1T6R A;  3LLO A;  1H4Y A;  1VC1 A;  3F43 A;  3IH9 A;  2VY9 A;  2KA5 A;  5EUX A;  1TH8 B;  2KLN A;  4DGF A;  4DGH A;  4XS5 A;  1BUZ A;  3T6O A;  3IF5 A;  3LKL A;  5EZB A;  5EUS A;  1H4X A;  5EUW A;  3AGE A;  1THN B;  4QTP A;  5EUU A;  1AUZ A;  4HYL A;  3ZTB A;  3AGD A;  5EUZ A;  1H4Z A;  3MGL A;  3ZXN A;  3NY7 A;  3IHB A;  1TIL B; 
#chains in the Genus database with same CATH topology
 1H4Y A;  2RRL A;  3GHF A;  3GVL A;  4DGH A;  3EH7 A;  3IF5 A;  3LKL A;  3QDQ A;  3D03 A;  1THN B;  4HYL A;  1H4Z A;  3D3U A;  3MOG A;  3IH8 A;  3OIR A;  3LLO A;  3IH9 A;  2KA5 A;  4GHN A;  1K32 A;  4DGF A;  2B78 A;  1FC6 A;  4L1C A;  4AEJ A;  2DXL A;  5EUS A;  4L8K A;  5EUW A;  3K50 A;  3JU4 A;  1J7X A;  3ZTB A;  3C0K A;  3LDF A;  3AGD A;  5EUZ A;  3ZXN A;  2AS0 A;  4AE2 A;  3OIZ A;  1WXW A;  1TID B;  2OAS A;  3DJA A;  1VC1 A;  1TH8 B;  2KLN A;  1BUZ A;  3T6O A;  4HIZ A;  3DOR A;  1H4X A;  1V0F A;  3V97 A;  2CWW A;  3AGE A;  4JC0 A;  3GVK A;  1FCF A;  1HF2 A;  1N6E A;  3GK7 A;  1TIL B;  3GVJ A;  1SBO A;  3IHA A;  1T6R A;  1V0E A;  3F43 A;  2VY9 A;  1BPL A;  4DMG A;  5EUX A;  4XS5 A;  3VSE A;  1WXX A;  3GMF A;  2ZO9 B;  5EZB A;  1N6D A;  4QTP A;  5EUU A;  1AUZ A;  2ZOA A;  3V8V A;  1FC7 A;  2DXN A;  1N6F A;  1FC9 A;  3MGL A;  3DUP A;  3NY7 A;  3IHB A; 
#chains in the Genus database with same CATH homology
 3OIZ A;  3IH8 A;  3OIR A;  1TID B;  1SBO A;  3IHA A;  1T6R A;  3LLO A;  1H4Y A;  1VC1 A;  3F43 A;  3IH9 A;  2VY9 A;  2KA5 A;  5EUX A;  1TH8 B;  2KLN A;  4DGF A;  4DGH A;  4XS5 A;  1BUZ A;  3T6O A;  3IF5 A;  3LKL A;  5EZB A;  5EUS A;  1H4X A;  5EUW A;  3AGE A;  1THN B;  4QTP A;  5EUU A;  1AUZ A;  4HYL A;  3ZTB A;  3AGD A;  5EUZ A;  1H4Z A;  3MGL A;  3ZXN A;  3NY7 A;  3IHB A;  1TIL B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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