1SG2A

Crystal structure of the periplasmic chaperone skp
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
141
structure length
141
Chain Sequence
ADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords Seventeen Kilodalton Protein
publication title Structure of the periplasmic chaperone Skp suggests functional similarity with cytosolic chaperones despite differing architecture.
pubmed doi rcsb
source organism Escherichia coli
total genus 51
structure length 141
sequence length 141
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-02-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03938 OmpH Outer membrane protein (OmpH-like)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.910.20 Alpha Beta 2-Layer Sandwich Protein Binding, DinI Protein; Chain A Skp domain 1sg2A00
1SG2A 4KQTA 1U2MA
chains in the Genus database with same CATH superfamily
3BB7A 1U2MA 1PVJA 4EVXA 1GHHA 4KQTA 1DKIA 1SG2A
chains in the Genus database with same CATH topology
1SG2A 4KQTA 1U2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SG2 A;  4KQT A;  1U2M A; 
#chains in the Genus database with same CATH topology
 3BB7 A;  1U2M A;  1PVJ A;  4EVX A;  1GHH A;  4KQT A;  1DKI A;  1SG2 A; 
#chains in the Genus database with same CATH homology
 1SG2 A;  4KQT A;  1U2M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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