1SGVA

Structure of trna psi55 pseudouridine synthase (trub)
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
290
structure length
262
Chain Sequence
ATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEILEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords tRNA pseudouridine synthase B
publication title Crystal structure of the apo forms of psi 55 tRNA pseudouridine synthase from Mycobacterium tuberculosis: a hinge at the base of the catalytic cleft.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Lyase
total genus 75
structure length 262
sequence length 290
chains with identical sequence B
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2004-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF09142 TruB_C tRNA Pseudouridine synthase II, C terminal
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 1sgvA02
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1sgvA01
2EY4A 1K8WA 2AUSA 1PRZA 1V9KA 4LGTA 2RFKA 1SGVA 1XPIA 1KSKA 2APOA 1IT7A 3MQKA 3C0KA 2J5VA 2HVYA 2AS0A 1KSVA 3LWQA 1WXXA 1QYUA 4DMGA 2CWWA 1V9FA 3HAXA 1IQ8A 3HJWA 1J2BA 2J5TA 1KSLA 4LABA 3DH3A 1IT8A 1ZE1A 3U28A 2P38A 3LDFA 4Q1TA 2Q07A 3D79A 1ZL3A 3LWVA 2AB4A 3LWPA 3LWRA 2CX1A 1R3FA 2I82A 1WXWA 1ZS7A 3HJYA 1ZE2A 3UAIA 2ISTA 3LWOA 2B78A 1Q7HA 1SQWA 2CX0A 1T5YA 3VSEA 1R3EA
chains in the Genus database with same CATH superfamily
1PRZA 1V9KA 2FRXA 3C0KA 1SI7A 3LWQA 1UOYA 1WXXA 1S04A 1ZE1A 3LDFA 2ANEA 1ZL3A 3LWPA 3IUWA 4TZ4C 2I82A 1XNEA 2DP9A 2Z0TA 1Q7HA 3VSEA 2EY4A 1K8WA 2AUSA 2RFKA 1SGVA 2APOA 1XPIA 2AS0A 2KKUA 1SB7A 1ZBOA 4DMGA 3HJWA 1KSLA 3M6XA 4LABA 2E5OA 3M6VA 3LWVA 2CX1A 1Z2ZA 1ZE2A 3UAIA 3LWOA 1TE7A 2CX0A 1T5YA 4LGTA 1R3EA 3MQKA 4CI3B 1KSKA 3LJCA 2J5VA 1KSVA 3M65A 1WK2A 3HAXA 2CWWA 1IQ8A 3M6WA 4CI2B 2Q07A 2AB4A 1R3FA 1WXWA 3HJYA 3ZV0C 1QYUA 4CI1B 2HVYA 1IT7A 1V9FA 1J2BA 2J5TA 3DH3A 3M4XA 1IT8A 3U28A 2P38A 4Q1TA 3D79A 3LWRA 1ZS7A 3M6UA 2ISTA 2B78A 1SQWA 1SZWA
chains in the Genus database with same CATH topology
2EY4A 1K8WA 2AUSA 1PRZA 1V9KA 4LGTA 2RFKA 1SGVA 1XPIA 1KSKA 2APOA 1IT7A 3MQKA 3C0KA 2J5VA 2HVYA 2AS0A 1KSVA 1SI7A 3LWQA 1WXXA 1QYUA 1SB7A 4DMGA 2CWWA 1V9FA 3HAXA 1IQ8A 3HJWA 1J2BA 2J5TA 1KSLA 4LABA 3DH3A 1IT8A 1ZE1A 3U28A 2P38A 3LDFA 4Q1TA 2Q07A 3D79A 1ZL3A 3LWVA 2AB4A 3LWPA 3LWRA 2CX1A 1Z2ZA 1R3FA 2I82A 1WXWA 1ZS7A 3HJYA 1ZE2A 3UAIA 2ISTA 3LWOA 2B78A 1Q7HA 1SQWA 1SZWA 2CX0A 1T5YA 3VSEA 1R3EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EY4 A;  1K8W A;  2AUS A;  1PRZ A;  1V9K A;  4LGT A;  2RFK A;  1SGV A;  1XPI A;  1KSK A;  2APO A;  1IT7 A;  3MQK A;  3C0K A;  2J5V A;  2HVY A;  2AS0 A;  1KSV A;  3LWQ A;  1WXX A;  1QYU A;  4DMG A;  2CWW A;  1V9F A;  3HAX A;  1IQ8 A;  3HJW A;  1J2B A;  2J5T A;  1KSL A;  4LAB A;  3DH3 A;  1IT8 A;  1ZE1 A;  3U28 A;  2P38 A;  3LDF A;  4Q1T A;  2Q07 A;  3D79 A;  1ZL3 A;  3LWV A;  2AB4 A;  3LWP A;  3LWR A;  2CX1 A;  1R3F A;  2I82 A;  1WXW A;  1ZS7 A;  3HJY A;  1ZE2 A;  3UAI A;  2IST A;  3LWO A;  2B78 A;  1Q7H A;  1SQW A;  2CX0 A;  1T5Y A;  3VSE A;  1R3E A; 
#chains in the Genus database with same CATH topology
 1PRZ A;  1V9K A;  2FRX A;  3C0K A;  1SI7 A;  3LWQ A;  1UOY A;  1WXX A;  1S04 A;  1ZE1 A;  3LDF A;  2ANE A;  1ZL3 A;  3LWP A;  3IUW A;  4TZ4 C;  2I82 A;  1XNE A;  2DP9 A;  2Z0T A;  1Q7H A;  3VSE A;  2EY4 A;  1K8W A;  2AUS A;  2RFK A;  1SGV A;  2APO A;  1XPI A;  2AS0 A;  2KKU A;  1SB7 A;  1ZBO A;  4DMG A;  3HJW A;  1KSL A;  3M6X A;  4LAB A;  2E5O A;  3M6V A;  3LWV A;  2CX1 A;  1Z2Z A;  1ZE2 A;  3UAI A;  3LWO A;  1TE7 A;  2CX0 A;  1T5Y A;  4LGT A;  1R3E A;  3MQK A;  4CI3 B;  1KSK A;  3LJC A;  2J5V A;  1KSV A;  3M65 A;  1WK2 A;  3HAX A;  2CWW A;  1IQ8 A;  3M6W A;  4CI2 B;  2Q07 A;  2AB4 A;  1R3F A;  1WXW A;  3HJY A;  3ZV0 C;  1QYU A;  4CI1 B;  2HVY A;  1IT7 A;  1V9F A;  1J2B A;  2J5T A;  3DH3 A;  3M4X A;  1IT8 A;  3U28 A;  2P38 A;  4Q1T A;  3D79 A;  3LWR A;  1ZS7 A;  3M6U A;  2IST A;  2B78 A;  1SQW A;  1SZW A; 
#chains in the Genus database with same CATH homology
 2EY4 A;  1K8W A;  2AUS A;  1PRZ A;  1V9K A;  4LGT A;  2RFK A;  1SGV A;  1XPI A;  1KSK A;  2APO A;  1IT7 A;  3MQK A;  3C0K A;  2J5V A;  2HVY A;  2AS0 A;  1KSV A;  1SI7 A;  3LWQ A;  1WXX A;  1QYU A;  1SB7 A;  4DMG A;  2CWW A;  1V9F A;  3HAX A;  1IQ8 A;  3HJW A;  1J2B A;  2J5T A;  1KSL A;  4LAB A;  3DH3 A;  1IT8 A;  1ZE1 A;  3U28 A;  2P38 A;  3LDF A;  4Q1T A;  2Q07 A;  3D79 A;  1ZL3 A;  3LWV A;  2AB4 A;  3LWP A;  3LWR A;  2CX1 A;  1Z2Z A;  1R3F A;  2I82 A;  1WXW A;  1ZS7 A;  3HJY A;  1ZE2 A;  3UAI A;  2IST A;  3LWO A;  2B78 A;  1Q7H A;  1SQW A;  1SZW A;  2CX0 A;  1T5Y A;  3VSE A;  1R3E A; 
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