1SH6A

Crystal structure of actin-binding domain of mouse plectin
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
230
structure length
230
Chain Sequence
ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Plectin 1
publication title Actin-binding domain of mouse plectin: crystal structure and binding to vimentin
pubmed doi rcsb
source organism Mus musculus
total genus 77
structure length 230
sequence length 230
ec nomenclature
pdb deposition date 2004-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1sh6A02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1sh6A01
2RR8A 2EE7A 1WYRA 1UEGA 5A36A 4EDLA 1SH5A 5A38A 2D89A 1BHDA 3JAKM 1WYNA 1PA7A 1WJOA 4EDNA 2L3GA 3HORA 3KMWB 2QJXA 2D86A 1VKAA 1WKUA 4Q58A 3KMUB 2E9KA 1AA2A 3JALM 2D88A 1WYLA 1WYQA 3REPB 1MB8A 4Q57B 1WYOA 1H67A 2VZIB 3JARM 2R0OA 2JV9A 2WA6A 5BVRA 2R8UA 1PXYA 3KY9A 2D85A 3HOPA 2YRNA 5A37A 2WA5A 2K3SA 3HOCA 5L0OA 2D87A 2EYIA 3CO1A 1V5KA 1WYMA 4TXIA 2EYNA 2VZDA 5A4BA 2VZCA 4B7LA 1QAGA 2VZGB 2K2RA 1WIXA 5J8EA 1P5SA 2WFNA 1DXXA 1AOAA 1RT8A 1WYPA 4Q59A 1BKRA 3F7PA 1P2XA 4EDMA 1UJOA 4TXKA 1SH6A 2QJZA 2WA7A 1TJTA 2DK9A 3FERA 3I6XA
chains in the Genus database with same CATH superfamily
4DDPA 2RR8A 2EE7A 1WYRA 1UEGA 5A36A 4EDLA 4LVPA 1SH5A 2HKPA 5A38A 2D89A 1BHDA 3JAKM 1WYNA 1PA7A 1WJOA 4EDNA 2L3GA 3HORA 3KMWB 2QJXA 2D86A 1VKAA 1WKUA 4Q58A 2HL8A 3KMUB 2E9KA 1EUVA 1AA2A 2HL9A 3JALM 3EAYA 2D88A 1WYLA 1WYQA 3REPB 1MB8A 2VE7C 4Q57B 1WYOA 1H67A 2VZIB 3JARM 5FMTA 2R0OA 2EQOA 2JV9A 3VP7A 2WA6A 5BVRA 2R8UA 1PXYA 2WDTA 3KY9A 2D85A 3HOPA 2YRNA 5A37A 2WA5A 2K3SA 3HOCA 5L0OA 2D87A 2EYIA 3CO1A 1V5KA 1WYMA 4TXIA 2EYNA 2VZDA 5A4BA 2VZCA 4B7LA 1QAGA 5FMUA 2VZGB 2K2RA 1WIXA 2IGPA 2VE7A 1P5SA 5J8EA 2WFNA 1DXXA 1AOAA 1RT8A 1WYPA 4Q59A 1BKRA 3F7PA 1P2XA 4EDMA 1UJOA 4TXKA 1SH6A 2QJZA 2WA7A 2WE6A 1TJTA 4LVRA 2DK9A 3FERA 3I6XA
chains in the Genus database with same CATH topology
2RR8A 2EE7A 1WYRA 1UEGA 5A36A 4EDLA 1SH5A 5A38A 2D89A 1BHDA 3JAKM 1WYNA 1PA7A 1WJOA 4EDNA 2L3GA 3HORA 3KMWB 2QJXA 2D86A 1VKAA 1WKUA 4Q58A 3KMUB 2E9KA 1AA2A 3JALM 2D88A 1WYLA 1WYQA 3REPB 1MB8A 4Q57B 1WYOA 1H67A 2VZIB 3JARM 2R0OA 2JV9A 2WA6A 5BVRA 2R8UA 1PXYA 3KY9A 2D85A 3HOPA 2YRNA 5A37A 2WA5A 2K3SA 3HOCA 5L0OA 2D87A 2EYIA 3CO1A 1V5KA 1WYMA 4TXIA 2EYNA 2VZDA 5A4BA 2VZCA 4B7LA 1QAGA 2VZGB 2K2RA 1WIXA 5J8EA 1P5SA 2WFNA 1DXXA 1AOAA 1RT8A 1WYPA 4Q59A 1BKRA 3F7PA 1P2XA 4EDMA 1UJOA 4TXKA 1SH6A 2QJZA 2WA7A 1TJTA 2DK9A 3FERA 3I6XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RR8 A;  2EE7 A;  1WYR A;  1UEG A;  5A36 A;  4EDL A;  1SH5 A;  5A38 A;  2D89 A;  1BHD A;  3JAK M;  1WYN A;  1PA7 A;  1WJO A;  4EDN A;  2L3G A;  3HOR A;  3KMW B;  2QJX A;  2D86 A;  1VKA A;  1WKU A;  4Q58 A;  3KMU B;  2E9K A;  1AA2 A;  3JAL M;  2D88 A;  1WYL A;  1WYQ A;  3REP B;  1MB8 A;  4Q57 B;  1WYO A;  1H67 A;  2VZI B;  3JAR M;  2R0O A;  2JV9 A;  2WA6 A;  5BVR A;  2R8U A;  1PXY A;  3KY9 A;  2D85 A;  3HOP A;  2YRN A;  5A37 A;  2WA5 A;  2K3S A;  3HOC A;  5L0O A;  2D87 A;  2EYI A;  3CO1 A;  1V5K A;  1WYM A;  4TXI A;  2EYN A;  2VZD A;  5A4B A;  2VZC A;  4B7L A;  1QAG A;  2VZG B;  2K2R A;  1WIX A;  5J8E A;  1P5S A;  2WFN A;  1DXX A;  1AOA A;  1RT8 A;  1WYP A;  4Q59 A;  1BKR A;  3F7P A;  1P2X A;  4EDM A;  1UJO A;  4TXK A;  1SH6 A;  2QJZ A;  2WA7 A;  1TJT A;  2DK9 A;  3FER A;  3I6X A; 
#chains in the Genus database with same CATH topology
 4DDP A;  2RR8 A;  2EE7 A;  1WYR A;  1UEG A;  5A36 A;  4EDL A;  4LVP A;  1SH5 A;  2HKP A;  5A38 A;  2D89 A;  1BHD A;  3JAK M;  1WYN A;  1PA7 A;  1WJO A;  4EDN A;  2L3G A;  3HOR A;  3KMW B;  2QJX A;  2D86 A;  1VKA A;  1WKU A;  4Q58 A;  2HL8 A;  3KMU B;  2E9K A;  1EUV A;  1AA2 A;  2HL9 A;  3JAL M;  3EAY A;  2D88 A;  1WYL A;  1WYQ A;  3REP B;  1MB8 A;  2VE7 C;  4Q57 B;  1WYO A;  1H67 A;  2VZI B;  3JAR M;  5FMT A;  2R0O A;  2EQO A;  2JV9 A;  3VP7 A;  2WA6 A;  5BVR A;  2R8U A;  1PXY A;  2WDT A;  3KY9 A;  2D85 A;  3HOP A;  2YRN A;  5A37 A;  2WA5 A;  2K3S A;  3HOC A;  5L0O A;  2D87 A;  2EYI A;  3CO1 A;  1V5K A;  1WYM A;  4TXI A;  2EYN A;  2VZD A;  5A4B A;  2VZC A;  4B7L A;  1QAG A;  5FMU A;  2VZG B;  2K2R A;  1WIX A;  2IGP A;  2VE7 A;  1P5S A;  5J8E A;  2WFN A;  1DXX A;  1AOA A;  1RT8 A;  1WYP A;  4Q59 A;  1BKR A;  3F7P A;  1P2X A;  4EDM A;  1UJO A;  4TXK A;  1SH6 A;  2QJZ A;  2WA7 A;  2WE6 A;  1TJT A;  4LVR A;  2DK9 A;  3FER A;  3I6X A; 
#chains in the Genus database with same CATH homology
 2RR8 A;  2EE7 A;  1WYR A;  1UEG A;  5A36 A;  4EDL A;  1SH5 A;  5A38 A;  2D89 A;  1BHD A;  3JAK M;  1WYN A;  1PA7 A;  1WJO A;  4EDN A;  2L3G A;  3HOR A;  3KMW B;  2QJX A;  2D86 A;  1VKA A;  1WKU A;  4Q58 A;  3KMU B;  2E9K A;  1AA2 A;  3JAL M;  2D88 A;  1WYL A;  1WYQ A;  3REP B;  1MB8 A;  4Q57 B;  1WYO A;  1H67 A;  2VZI B;  3JAR M;  2R0O A;  2JV9 A;  2WA6 A;  5BVR A;  2R8U A;  1PXY A;  3KY9 A;  2D85 A;  3HOP A;  2YRN A;  5A37 A;  2WA5 A;  2K3S A;  3HOC A;  5L0O A;  2D87 A;  2EYI A;  3CO1 A;  1V5K A;  1WYM A;  4TXI A;  2EYN A;  2VZD A;  5A4B A;  2VZC A;  4B7L A;  1QAG A;  2VZG B;  2K2R A;  1WIX A;  5J8E A;  1P5S A;  2WFN A;  1DXX A;  1AOA A;  1RT8 A;  1WYP A;  4Q59 A;  1BKR A;  3F7P A;  1P2X A;  4EDM A;  1UJO A;  4TXK A;  1SH6 A;  2QJZ A;  2WA7 A;  1TJT A;  2DK9 A;  3FER A;  3I6X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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