1SJ7A

Crystal structure of talin rod 482-655
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
167
structure length
167
Chain Sequence
LTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein
molecule keywords Talin 1
publication title Activation of a vinculin-binding site in the talin rod involves rearrangement of a five-helix bundle
pubmed doi rcsb
source organism Mus musculus
total genus 70
structure length 167
sequence length 167
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09141 Talin_middle Talin, middle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.10 Mainly Alpha Up-down Bundle A middle domain of Talin 1 Talin, central domain 1sj7A00
2KVPA 1SJ8A 2L7NA 4W8PA 2KGXA 3AY5A 2KBBA 2L10A 5FZTA 2X0CA 3DYJA 3FYQA 4F7GB 1SJ7A
chains in the Genus database with same CATH superfamily
2LQUA 3V5SA 3V5UA 3M1CA 5HXEA 2KBBA 5HXCA 5JDLA 3FYQA 3PF0A 3PHF1 5HXRA 2KVPA 5JDNA 2XQYA 2L7NA 4ONRA 4W8PA 2KGXA 4BGOA 2L10A 3AT7A 5HXHA 5JDQA 5T1DA 1SJ8A 3VJZA 5HYAA 5JDGA 3WSCA 3WURA 5JDHA 5HWYA 2X0CA 4ECGA 4F7GB 1SJ7A 5JDFA 5HWXA 2MTCA 5HXSA 5JDMA 3AY5A 5FZTA 3DYJA
chains in the Genus database with same CATH topology
2KVPA 1SJ8A 2L7NA 4W8PA 2KGXA 3AY5A 2KBBA 2L10A 5FZTA 2X0CA 3DYJA 3FYQA 4F7GB 1SJ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KVP A;  1SJ8 A;  2L7N A;  4W8P A;  2KGX A;  3AY5 A;  2KBB A;  2L10 A;  5FZT A;  2X0C A;  3DYJ A;  3FYQ A;  4F7G B;  1SJ7 A; 
#chains in the Genus database with same CATH topology
 2LQU A;  3V5S A;  3V5U A;  3M1C A;  5HXE A;  2KBB A;  5HXC A;  5JDL A;  3FYQ A;  3PF0 A;  3PHF 1;  5HXR A;  2KVP A;  5JDN A;  2XQY A;  2L7N A;  4ONR A;  4W8P A;  2KGX A;  4BGO A;  2L10 A;  3AT7 A;  5HXH A;  5JDQ A;  5T1D A;  1SJ8 A;  3VJZ A;  5HYA A;  5JDG A;  3WSC A;  3WUR A;  5JDH A;  5HWY A;  2X0C A;  4ECG A;  4F7G B;  1SJ7 A;  5JDF A;  5HWX A;  2MTC A;  5HXS A;  5JDM A;  3AY5 A;  5FZT A;  3DYJ A; 
#chains in the Genus database with same CATH homology
 2KVP A;  1SJ8 A;  2L7N A;  4W8P A;  2KGX A;  3AY5 A;  2KBB A;  2L10 A;  5FZT A;  2X0C A;  3DYJ A;  3FYQ A;  4F7G B;  1SJ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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