1SJ8A

Crystal structure of talin residues 482-789
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
297
structure length
297
Chain Sequence
PPLTSAQQALTGTINSSMQAVQAAQATLDDFETLPPLGQDAASKAWRKNKMDESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNELL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein
molecule keywords Talin 1
publication title Activation of a vinculin-binding site in the talin rod involves rearrangement of a five-helix bundle
pubmed doi rcsb
source organism Mus musculus
total genus 119
structure length 297
sequence length 297
ec nomenclature
pdb deposition date 2004-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09141 Talin_middle Talin, middle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.10 Mainly Alpha Up-down Bundle A middle domain of Talin 1 Talin, central domain 1sj8A01
1.20.1440.10 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 1sj8A02
3DYJA 4F7GB 5FZTA 2KBBA 3FYQA 3AY5A 2L7NA 4W8PA 2X0CA 1SJ7A 1YO7A 2KVPA 2KGXA 1SJ8A 2L10A
chains in the Genus database with same CATH superfamily
2RADA 3JSBA 3DO9A 1YO7A 2JB3A 2V1CC 2XMXA 4ONRA 2QGMA 5HXHA 2ZRRA 2A2CA 3B55A 4NV5A 3I9V1 2KGXA 3AJFA 4Q9VA 2RIOA 4OAVB 4PL5A 5LNK1 3SDJA 2JB2A 2BL7A 4NV2A 2BL8A 2MTCA 3IAS1 5HGIA 4O1OA 4OAUC 5JDGA 4I1TA 5HXSA 2X0CA 5HYAA 2F66B 2P22B 4PL4A 4HFVA 2RLDA 5JDHA 2GSCA 3DA4A 3DYJA 2L7NA 1JQOA 4ECGA 1SJ8A 4O1PA 4YZDA 2QZGA 5HXRA 4JCVE 3PF0A 5JDFA 5JDQA 4PL3A 4YZ9A 2F6MB 2CAZB 3WURA 4GXTA 4AS2A 4AS3A 2ETDA 2JAEA 5FZTA 2XTRA 2E8GA 2JBWA 5HXCA 3Q8DA 3FBVA 4Z7HA 5JDLA 5JDMA 2FEFA 3KP9A 2JB1A 2IP6A 4G76A 4HEA1 3P23A 3AT7A 2YFAA 3LJ0A 4YZCA 1W3SA 2L10A 2QSBA 2KVPA 2XTQA 3LJ2A 3DA3A 2FU2A 2KBBA 3LJ1A 2LQUA 4U6RA 3WSCA 2A2DA 2XQYA 3F4MA 1U5KA 4G75A 3FVVA 2YFBA 4DWLA 3M1CA 2KKMA 5T1DA 3AY5A 2MJFB 3L0IA 5JDNA 2HGKA 5HXEA 3PHF1 2FUG1 4F7GB 3V5SA 2V6EA 3FNBA 3IAM1 4Z7GA 2K19A 3FYQA 2ZW3A 4W8PA 2L1LB 1SJ7A 3V5UA 3VA9A 3VJZA 5HWYA 3UITA 1TDPA 5HWXA 4BGOA
chains in the Genus database with same CATH topology
3JSBA 3DO9A 1YO7A 2JB3A 2V1CC 2XMXA 2ZRRA 2A2CA 4NV5A 3I9V1 2KGXA 3AJFA 4Q9VA 2RIOA 4OAVB 4PL5A 5LNK1 3SDJA 2JB2A 4NV2A 3IAS1 5HGIA 4O1OA 4OAUC 4I1TA 2X0CA 2F66B 2P22B 4PL4A 4HFVA 3DA4A 3DYJA 2L7NA 1SJ8A 4O1PA 4YZDA 4JCVE 4PL3A 4YZ9A 2F6MB 2CAZB 4GXTA 4AS2A 4AS3A 2JAEA 5FZTA 2XTRA 2E8GA 3Q8DA 3FBVA 4Z7HA 3KP9A 2JB1A 2IP6A 4G76A 4HEA1 3P23A 2YFAA 3LJ0A 4YZCA 1W3SA 2XTQA 2KVPA 3LJ2A 3DA3A 2KBBA 3LJ1A 4U6RA 2A2DA 3F4MA 1U5KA 4G75A 2YFBA 4DWLA 2KKMA 3AY5A 2MJFB 3L0IA 2FUG1 4F7GB 2V6EA 4Z7GA 3IAM1 2K19A 3FYQA 4W8PA 2L1LB 1SJ7A 3VA9A 3UITA 2L10A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DYJ A;  4F7G B;  5FZT A;  2KBB A;  3FYQ A;  3AY5 A;  2L7N A;  4W8P A;  2X0C A;  1SJ7 A;  1YO7 A;  2KVP A;  2KGX A;  1SJ8 A;  2L10 A; 
#chains in the Genus database with same CATH topology
 2RAD A;  3JSB A;  3DO9 A;  1YO7 A;  2JB3 A;  2V1C C;  2XMX A;  4ONR A;  2QGM A;  5HXH A;  2ZRR A;  2A2C A;  3B55 A;  4NV5 A;  3I9V 1;  2KGX A;  3AJF A;  4Q9V A;  2RIO A;  4OAV B;  4PL5 A;  5LNK 1;  3SDJ A;  2JB2 A;  2BL7 A;  4NV2 A;  2BL8 A;  2MTC A;  3IAS 1;  5HGI A;  4O1O A;  4OAU C;  5JDG A;  4I1T A;  5HXS A;  2X0C A;  5HYA A;  2F66 B;  2P22 B;  4PL4 A;  4HFV A;  2RLD A;  5JDH A;  2GSC A;  3DA4 A;  3DYJ A;  2L7N A;  1JQO A;  4ECG A;  1SJ8 A;  4O1P A;  4YZD A;  2QZG A;  5HXR A;  4JCV E;  3PF0 A;  5JDF A;  5JDQ A;  4PL3 A;  4YZ9 A;  2F6M B;  2CAZ B;  3WUR A;  4GXT A;  4AS2 A;  4AS3 A;  2ETD A;  2JAE A;  5FZT A;  2XTR A;  2E8G A;  2JBW A;  5HXC A;  3Q8D A;  3FBV A;  4Z7H A;  5JDL A;  5JDM A;  2FEF A;  3KP9 A;  2JB1 A;  2IP6 A;  4G76 A;  4HEA 1;  3P23 A;  3AT7 A;  2YFA A;  3LJ0 A;  4YZC A;  1W3S A;  2L10 A;  2QSB A;  2KVP A;  2XTQ A;  3LJ2 A;  3DA3 A;  2FU2 A;  2KBB A;  3LJ1 A;  2LQU A;  4U6R A;  3WSC A;  2A2D A;  2XQY A;  3F4M A;  1U5K A;  4G75 A;  3FVV A;  2YFB A;  4DWL A;  3M1C A;  2KKM A;  5T1D A;  3AY5 A;  2MJF B;  3L0I A;  5JDN A;  2HGK A;  5HXE A;  3PHF 1;  2FUG 1;  4F7G B;  3V5S A;  2V6E A;  3FNB A;  3IAM 1;  4Z7G A;  2K19 A;  3FYQ A;  2ZW3 A;  4W8P A;  2L1L B;  1SJ7 A;  3V5U A;  3VA9 A;  3VJZ A;  5HWY A;  3UIT A;  1TDP A;  5HWX A;  4BGO A; 
#chains in the Genus database with same CATH homology
 3JSB A;  3DO9 A;  1YO7 A;  2JB3 A;  2V1C C;  2XMX A;  2ZRR A;  2A2C A;  4NV5 A;  3I9V 1;  2KGX A;  3AJF A;  4Q9V A;  2RIO A;  4OAV B;  4PL5 A;  5LNK 1;  3SDJ A;  2JB2 A;  4NV2 A;  3IAS 1;  5HGI A;  4O1O A;  4OAU C;  4I1T A;  2X0C A;  2F66 B;  2P22 B;  4PL4 A;  4HFV A;  3DA4 A;  3DYJ A;  2L7N A;  1SJ8 A;  4O1P A;  4YZD A;  4JCV E;  4PL3 A;  4YZ9 A;  2F6M B;  2CAZ B;  4GXT A;  4AS2 A;  4AS3 A;  2JAE A;  5FZT A;  2XTR A;  2E8G A;  3Q8D A;  3FBV A;  4Z7H A;  3KP9 A;  2JB1 A;  2IP6 A;  4G76 A;  4HEA 1;  3P23 A;  2YFA A;  3LJ0 A;  4YZC A;  1W3S A;  2XTQ A;  2KVP A;  3LJ2 A;  3DA3 A;  2KBB A;  3LJ1 A;  4U6R A;  2A2D A;  3F4M A;  1U5K A;  4G75 A;  2YFB A;  4DWL A;  2KKM A;  3AY5 A;  2MJF B;  3L0I A;  2FUG 1;  4F7G B;  2V6E A;  4Z7G A;  3IAM 1;  2K19 A;  3FYQ A;  4W8P A;  2L1L B;  1SJ7 A;  3VA9 A;  3UIT A;  2L10 A; 
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