1SJSA

Access to phosphorylation in isocitrate dehydrogenase may occur by domain shifting
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
415
structure length
415
Chain Sequence
ESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAIIENM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords ISOCITRATE DEHYDROGENASE
publication title Access to phosphorylation in isocitrate dehydrogenase may occur by domain shifting.
pubmed doi rcsb
source organism Escherichia coli
total genus 132
structure length 415
sequence length 415
ec nomenclature ec 1.1.1.42: Isocitrate dehydrogenase (NADP(+)).
pdb deposition date 1997-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 1sjsA00
2Y40A 4YB4A 1OSIA 1HQSA 2ZTWA 5HN5A 3VL6A 1LWDA 3MARA 4L04A 5I96A 3U1HA 5GRFB 1XKDA 5LGEA 1X0LA 1VLCA 4IWHA 4XRXA 1WPWA 1XADA 2QFXA 5GREB 5K11A 1DR8A 5HN6A 4AJBA 7ICDA 1PB3A 1ZORA 5ICDA 5J33A 4AJ3A 1XACA 1SJSA 3WZWA 1IDCA 1VI1A 2Y41A 3BLVA 2E0CA 3BLVB 1V94A 5GRLA 4AJAA 3LXYA 3R8WA 1HEXA 4I3KA 4BNPA 2IV0A 8ICDA 3U9EA 3VL2A 4XS3A 5DE1A 1ISOA 5HN3A 2UXRA 6ICDA 3LCBC 1P8FA 5GRFA 4AJCA 3FMXX 5I95A 5L58A 1DR0A 4AOVA 5GREA 1CM7A 2Y3ZA 1PS6A 1PB1A 4XXVA 3TY4A 3UF6A 3DMSA 1BL5A 4P69C 3WZVA 5GRIB 5GRIA 2QFYA 3VL4A 1XAAA 2QFVA 1A05A 4JA8A 1IDEA 1CW1A 1V53A 1WALA 4L06A 4F7IA 4UMYA 1G2UA 3VMJA 4JQPA 1IDDA 4ATYA 5GRHB 3INMA 1IKAA 3MAPA 1HJ6A 1PS7A 5GRHA 9ICDA 1CW4A 4WUOA 3UDUA 1DPZA 5K10A 1IDFA 4HCXA 1GC9A 3FLKA 1GROA 1YXOA 3ICDA 2UXQA 3MASB 2AYQA 3MASA 1OSJA 2QFWA 4Y1PA 2DHTA 4UMXA 3WZYA 1AI2A 4AJRA 1V5BA 1IPDA 2Y42A 3UDOA 2G4OA 3ASJA 3AH3A 3TNGA 3WZXA 1AI3A 1GC8A 5HN4A 1TYOA 1U7NA 3VMLA 1W0DA 4AOYA 1R8KA 3VKZA 3VMKA 3VL3A 1XABA 1PTMA 3VL7A 3TY3A 2HI1A 1T09A 4I3LA 4ICDA 4L03A 1T0LA 3US8A 3TSNA 4AOUA 2D4VA 4KZOA 4AJSA 5L57A 1IDMA 3BLXB 3BLXA 1GRPA 2D1CA 5J32A 5J34A 1CW7A 5GRLB 1CNZA 1XGVA 1YCOA 2E5MA
chains in the Genus database with same CATH superfamily
2Y40A 4YB4A 1OSIA 1HQSA 2ZTWA 5HN5A 3VL6A 1LWDA 3MARA 4L04A 5I96A 3U1HA 5GRFB 1XKDA 5LGEA 1X0LA 1VLCA 4IWHA 4XRXA 1WPWA 1XADA 2QFXA 5GREB 5K11A 1DR8A 5HN6A 4AJBA 7ICDA 1PB3A 1ZORA 5ICDA 5J33A 4AJ3A 1XACA 1SJSA 3WZWA 1IDCA 1VI1A 2Y41A 3BLVA 2E0CA 3BLVB 1V94A 5GRLA 4AJAA 3LXYA 3R8WA 1HEXA 4I3KA 4BNPA 2IV0A 8ICDA 3U9EA 3VL2A 4XS3A 5DE1A 1ISOA 5HN3A 2UXRA 6ICDA 3LCBC 1P8FA 5GRFA 4AJCA 3FMXX 5I95A 5L58A 1DR0A 4AOVA 5GREA 1CM7A 2Y3ZA 1PS6A 1PB1A 4XXVA 3TY4A 3UF6A 3DMSA 1BL5A 4P69C 3WZVA 5GRIB 5GRIA 2QFYA 3VL4A 1XAAA 2QFVA 1A05A 4JA8A 1IDEA 1CW1A 1V53A 1WALA 4L06A 4F7IA 4UMYA 1G2UA 3VMJA 4JQPA 1IDDA 4ATYA 5GRHB 3INMA 1IKAA 3MAPA 1HJ6A 1PS7A 5GRHA 9ICDA 1CW4A 4WUOA 3UDUA 1DPZA 5K10A 1IDFA 4HCXA 1GC9A 3FLKA 1GROA 1YXOA 3ICDA 2UXQA 3MASB 2AYQA 3MASA 1OSJA 2QFWA 4Y1PA 2DHTA 4UMXA 3WZYA 1AI2A 4AJRA 1V5BA 1IPDA 2Y42A 3UDOA 2G4OA 3ASJA 3AH3A 3TNGA 3WZXA 1AI3A 1GC8A 5HN4A 1TYOA 1U7NA 3VMLA 1W0DA 4AOYA 1R8KA 3VKZA 3VMKA 3VL3A 1XABA 1PTMA 3VL7A 3TY3A 2HI1A 1T09A 4I3LA 4ICDA 4L03A 1T0LA 3US8A 3TSNA 4AOUA 2D4VA 4KZOA 4AJSA 5L57A 1IDMA 3BLXB 3BLXA 1GRPA 2D1CA 5J32A 5J34A 1CW7A 5GRLB 1CNZA 1XGVA 1YCOA 2E5MA
chains in the Genus database with same CATH topology
2Y40A 4YB4A 1OSIA 1HQSA 2ZTWA 5HN5A 3VL6A 1LWDA 3MARA 4L04A 5I96A 3U1HA 5GRFB 1XKDA 5LGEA 1X0LA 1VLCA 4IWHA 4XRXA 1WPWA 1XADA 2QFXA 5GREB 5K11A 1DR8A 5HN6A 4AJBA 7ICDA 1PB3A 1ZORA 5ICDA 5J33A 4AJ3A 1XACA 1SJSA 3WZWA 1IDCA 1VI1A 2Y41A 3BLVA 2E0CA 3BLVB 1V94A 5GRLA 4AJAA 3LXYA 3R8WA 1HEXA 4I3KA 4BNPA 2IV0A 8ICDA 3U9EA 3VL2A 4XS3A 5DE1A 1ISOA 5HN3A 2UXRA 6ICDA 3LCBC 1P8FA 5GRFA 4AJCA 3FMXX 5I95A 5L58A 1DR0A 4AOVA 5GREA 1CM7A 2Y3ZA 1PS6A 1PB1A 4XXVA 3TY4A 3UF6A 3DMSA 1BL5A 4P69C 3WZVA 5GRIB 5GRIA 2QFYA 3VL4A 1XAAA 2QFVA 1A05A 4JA8A 1IDEA 1CW1A 1V53A 1WALA 4L06A 4F7IA 4UMYA 1G2UA 3VMJA 4JQPA 1IDDA 4ATYA 5GRHB 3INMA 1IKAA 3MAPA 1HJ6A 1PS7A 5GRHA 9ICDA 1CW4A 4WUOA 3UDUA 1DPZA 5K10A 1IDFA 4HCXA 1GC9A 3FLKA 1GROA 1YXOA 3ICDA 2UXQA 3MASB 2AYQA 3MASA 1OSJA 2QFWA 4Y1PA 2DHTA 4UMXA 3WZYA 1AI2A 4AJRA 1V5BA 1IPDA 2Y42A 3UDOA 2G4OA 3ASJA 3AH3A 3TNGA 3WZXA 1AI3A 1GC8A 5HN4A 1TYOA 1U7NA 3VMLA 1W0DA 4AOYA 1R8KA 3VKZA 3VMKA 3VL3A 1XABA 1PTMA 3VL7A 3TY3A 2HI1A 1T09A 4I3LA 4ICDA 4L03A 1T0LA 3US8A 3TSNA 4AOUA 2D4VA 4KZOA 4AJSA 5L57A 1IDMA 3BLXB 3BLXA 1GRPA 2D1CA 5J32A 5J34A 1CW7A 5GRLB 1CNZA 1XGVA 1YCOA 2E5MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y40 A;  4YB4 A;  1OSI A;  1HQS A;  2ZTW A;  5HN5 A;  3VL6 A;  1LWD A;  3MAR A;  4L04 A;  5I96 A;  3U1H A;  5GRF B;  1XKD A;  5LGE A;  1X0L A;  1VLC A;  4IWH A;  4XRX A;  1WPW A;  1XAD A;  2QFX A;  5GRE B;  5K11 A;  1DR8 A;  5HN6 A;  4AJB A;  7ICD A;  1PB3 A;  1ZOR A;  5ICD A;  5J33 A;  4AJ3 A;  1XAC A;  1SJS A;  3WZW A;  1IDC A;  1VI1 A;  2Y41 A;  3BLV A;  2E0C A;  3BLV B;  1V94 A;  5GRL A;  4AJA A;  3LXY A;  3R8W A;  1HEX A;  4I3K A;  4BNP A;  2IV0 A;  8ICD A;  3U9E A;  3VL2 A;  4XS3 A;  5DE1 A;  1ISO A;  5HN3 A;  2UXR A;  6ICD A;  3LCB C;  1P8F A;  5GRF A;  4AJC A;  3FMX X;  5I95 A;  5L58 A;  1DR0 A;  4AOV A;  5GRE A;  1CM7 A;  2Y3Z A;  1PS6 A;  1PB1 A;  4XXV A;  3TY4 A;  3UF6 A;  3DMS A;  1BL5 A;  4P69 C;  3WZV A;  5GRI B;  5GRI A;  2QFY A;  3VL4 A;  1XAA A;  2QFV A;  1A05 A;  4JA8 A;  1IDE A;  1CW1 A;  1V53 A;  1WAL A;  4L06 A;  4F7I A;  4UMY A;  1G2U A;  3VMJ A;  4JQP A;  1IDD A;  4ATY A;  5GRH B;  3INM A;  1IKA A;  3MAP A;  1HJ6 A;  1PS7 A;  5GRH A;  9ICD A;  1CW4 A;  4WUO A;  3UDU A;  1DPZ A;  5K10 A;  1IDF A;  4HCX A;  1GC9 A;  3FLK A;  1GRO A;  1YXO A;  3ICD A;  2UXQ A;  3MAS B;  2AYQ A;  3MAS A;  1OSJ A;  2QFW A;  4Y1P A;  2DHT A;  4UMX A;  3WZY A;  1AI2 A;  4AJR A;  1V5B A;  1IPD A;  2Y42 A;  3UDO A;  2G4O A;  3ASJ A;  3AH3 A;  3TNG A;  3WZX A;  1AI3 A;  1GC8 A;  5HN4 A;  1TYO A;  1U7N A;  3VML A;  1W0D A;  4AOY A;  1R8K A;  3VKZ A;  3VMK A;  3VL3 A;  1XAB A;  1PTM A;  3VL7 A;  3TY3 A;  2HI1 A;  1T09 A;  4I3L A;  4ICD A;  4L03 A;  1T0L A;  3US8 A;  3TSN A;  4AOU A;  2D4V A;  4KZO A;  4AJS A;  5L57 A;  1IDM A;  3BLX B;  3BLX A;  1GRP A;  2D1C A;  5J32 A;  5J34 A;  1CW7 A;  5GRL B;  1CNZ A;  1XGV A;  1YCO A;  2E5M A; 
#chains in the Genus database with same CATH topology
 2Y40 A;  4YB4 A;  1OSI A;  1HQS A;  2ZTW A;  5HN5 A;  3VL6 A;  1LWD A;  3MAR A;  4L04 A;  5I96 A;  3U1H A;  5GRF B;  1XKD A;  5LGE A;  1X0L A;  1VLC A;  4IWH A;  4XRX A;  1WPW A;  1XAD A;  2QFX A;  5GRE B;  5K11 A;  1DR8 A;  5HN6 A;  4AJB A;  7ICD A;  1PB3 A;  1ZOR A;  5ICD A;  5J33 A;  4AJ3 A;  1XAC A;  1SJS A;  3WZW A;  1IDC A;  1VI1 A;  2Y41 A;  3BLV A;  2E0C A;  3BLV B;  1V94 A;  5GRL A;  4AJA A;  3LXY A;  3R8W A;  1HEX A;  4I3K A;  4BNP A;  2IV0 A;  8ICD A;  3U9E A;  3VL2 A;  4XS3 A;  5DE1 A;  1ISO A;  5HN3 A;  2UXR A;  6ICD A;  3LCB C;  1P8F A;  5GRF A;  4AJC A;  3FMX X;  5I95 A;  5L58 A;  1DR0 A;  4AOV A;  5GRE A;  1CM7 A;  2Y3Z A;  1PS6 A;  1PB1 A;  4XXV A;  3TY4 A;  3UF6 A;  3DMS A;  1BL5 A;  4P69 C;  3WZV A;  5GRI B;  5GRI A;  2QFY A;  3VL4 A;  1XAA A;  2QFV A;  1A05 A;  4JA8 A;  1IDE A;  1CW1 A;  1V53 A;  1WAL A;  4L06 A;  4F7I A;  4UMY A;  1G2U A;  3VMJ A;  4JQP A;  1IDD A;  4ATY A;  5GRH B;  3INM A;  1IKA A;  3MAP A;  1HJ6 A;  1PS7 A;  5GRH A;  9ICD A;  1CW4 A;  4WUO A;  3UDU A;  1DPZ A;  5K10 A;  1IDF A;  4HCX A;  1GC9 A;  3FLK A;  1GRO A;  1YXO A;  3ICD A;  2UXQ A;  3MAS B;  2AYQ A;  3MAS A;  1OSJ A;  2QFW A;  4Y1P A;  2DHT A;  4UMX A;  3WZY A;  1AI2 A;  4AJR A;  1V5B A;  1IPD A;  2Y42 A;  3UDO A;  2G4O A;  3ASJ A;  3AH3 A;  3TNG A;  3WZX A;  1AI3 A;  1GC8 A;  5HN4 A;  1TYO A;  1U7N A;  3VML A;  1W0D A;  4AOY A;  1R8K A;  3VKZ A;  3VMK A;  3VL3 A;  1XAB A;  1PTM A;  3VL7 A;  3TY3 A;  2HI1 A;  1T09 A;  4I3L A;  4ICD A;  4L03 A;  1T0L A;  3US8 A;  3TSN A;  4AOU A;  2D4V A;  4KZO A;  4AJS A;  5L57 A;  1IDM A;  3BLX B;  3BLX A;  1GRP A;  2D1C A;  5J32 A;  5J34 A;  1CW7 A;  5GRL B;  1CNZ A;  1XGV A;  1YCO A;  2E5M A; 
#chains in the Genus database with same CATH homology
 2Y40 A;  4YB4 A;  1OSI A;  1HQS A;  2ZTW A;  5HN5 A;  3VL6 A;  1LWD A;  3MAR A;  4L04 A;  5I96 A;  3U1H A;  5GRF B;  1XKD A;  5LGE A;  1X0L A;  1VLC A;  4IWH A;  4XRX A;  1WPW A;  1XAD A;  2QFX A;  5GRE B;  5K11 A;  1DR8 A;  5HN6 A;  4AJB A;  7ICD A;  1PB3 A;  1ZOR A;  5ICD A;  5J33 A;  4AJ3 A;  1XAC A;  1SJS A;  3WZW A;  1IDC A;  1VI1 A;  2Y41 A;  3BLV A;  2E0C A;  3BLV B;  1V94 A;  5GRL A;  4AJA A;  3LXY A;  3R8W A;  1HEX A;  4I3K A;  4BNP A;  2IV0 A;  8ICD A;  3U9E A;  3VL2 A;  4XS3 A;  5DE1 A;  1ISO A;  5HN3 A;  2UXR A;  6ICD A;  3LCB C;  1P8F A;  5GRF A;  4AJC A;  3FMX X;  5I95 A;  5L58 A;  1DR0 A;  4AOV A;  5GRE A;  1CM7 A;  2Y3Z A;  1PS6 A;  1PB1 A;  4XXV A;  3TY4 A;  3UF6 A;  3DMS A;  1BL5 A;  4P69 C;  3WZV A;  5GRI B;  5GRI A;  2QFY A;  3VL4 A;  1XAA A;  2QFV A;  1A05 A;  4JA8 A;  1IDE A;  1CW1 A;  1V53 A;  1WAL A;  4L06 A;  4F7I A;  4UMY A;  1G2U A;  3VMJ A;  4JQP A;  1IDD A;  4ATY A;  5GRH B;  3INM A;  1IKA A;  3MAP A;  1HJ6 A;  1PS7 A;  5GRH A;  9ICD A;  1CW4 A;  4WUO A;  3UDU A;  1DPZ A;  5K10 A;  1IDF A;  4HCX A;  1GC9 A;  3FLK A;  1GRO A;  1YXO A;  3ICD A;  2UXQ A;  3MAS B;  2AYQ A;  3MAS A;  1OSJ A;  2QFW A;  4Y1P A;  2DHT A;  4UMX A;  3WZY A;  1AI2 A;  4AJR A;  1V5B A;  1IPD A;  2Y42 A;  3UDO A;  2G4O A;  3ASJ A;  3AH3 A;  3TNG A;  3WZX A;  1AI3 A;  1GC8 A;  5HN4 A;  1TYO A;  1U7N A;  3VML A;  1W0D A;  4AOY A;  1R8K A;  3VKZ A;  3VMK A;  3VL3 A;  1XAB A;  1PTM A;  3VL7 A;  3TY3 A;  2HI1 A;  1T09 A;  4I3L A;  4ICD A;  4L03 A;  1T0L A;  3US8 A;  3TSN A;  4AOU A;  2D4V A;  4KZO A;  4AJS A;  5L57 A;  1IDM A;  3BLX B;  3BLX A;  1GRP A;  2D1C A;  5J32 A;  5J34 A;  1CW7 A;  5GRL B;  1CNZ A;  1XGV A;  1YCO A;  2E5M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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