1SK4A

Crystal structure of the c-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein ialpha
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
163
structure length
162
Chain Sequence
PNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Immune system
molecule keywords Peptidoglycan recognition protein I-alpha
publication title Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein Ialpha
pubmed doi rcsb
source organism Homo sapiens
total genus 50
structure length 162
sequence length 163
ec nomenclature
pdb deposition date 2004-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 1sk4A00
3UMQA 5E0BA 4OUGA 2Y2DA 2AR3A 4ZXMA 4Q9EA 2Z9NA 2APHA 3QJ1A 1TWQA 1LBAA 1SK4A 4BOLA 1SXRA 3CG9A 2EAVA 5E0AA 2RKQA 2R2KA 4FNNA 3D2YA 1SK3A 1Z6IA 2F2LA 1AROL 3OGXA 3UMLA 3LATA 1S2JA 4ORVA 1YCKA 4OPPA 2WKXA 2XZ8A 3NNOA 1J3GA 4X36A 5DWFA 4IVVA 2Y28A 2F2LX 3C2XA 3QS0A 3CXAA 4BXEA 5CTVA 3T2VA 2EAXA 2Y2CA 2Y2EA 2BH7A 3USXA 2Y2BA 4KNKA 3RDRA 4Q8SA 3T39A 4BPAA 3UILA 3O4KA 3NG4A 4BXJA 1YB0A 3TRUA 4BXDA 3NW3A 3EP1A 4KNLA 4OLSA 1OHTA 3D2ZA 3HMBA 3RT4A 2L47A 2XZ4A 4GF9A 4Z8IA 4BJ4A 3QV4A 3CORA 2CB3A 2R90A
chains in the Genus database with same CATH superfamily
3UMQA 5E0BA 4OUGA 2Y2DA 2AR3A 4ZXMA 4Q9EA 2Z9NA 2APHA 3QJ1A 1TWQA 1LBAA 1SK4A 4BOLA 1SXRA 3CG9A 2EAVA 5E0AA 2RKQA 2R2KA 4FNNA 3D2YA 1SK3A 1Z6IA 2F2LA 1AROL 3OGXA 3UMLA 3LATA 1S2JA 4ORVA 1YCKA 4OPPA 2WKXA 2XZ8A 3NNOA 1J3GA 4X36A 5DWFA 4IVVA 2Y28A 2F2LX 3C2XA 3QS0A 3CXAA 4BXEA 5CTVA 3T2VA 2EAXA 2Y2CA 2Y2EA 2BH7A 3USXA 2Y2BA 4KNKA 3RDRA 4Q8SA 3T39A 4BPAA 3UILA 3O4KA 3NG4A 4BXJA 1YB0A 3TRUA 4BXDA 3NW3A 3EP1A 4KNLA 4OLSA 1OHTA 3D2ZA 3HMBA 3RT4A 2L47A 2XZ4A 4GF9A 4Z8IA 4BJ4A 3QV4A 3CORA 2CB3A 2R90A
chains in the Genus database with same CATH topology
3UMQA 5E0BA 4OUGA 2Y2DA 2AR3A 4ZXMA 4Q9EA 2Z9NA 2APHA 3QJ1A 1TWQA 1LBAA 1SK4A 4BOLA 1SXRA 3CG9A 2EAVA 5E0AA 2RKQA 2R2KA 4FNNA 3D2YA 1SK3A 1Z6IA 2F2LA 1AROL 3OGXA 3UMLA 3LATA 1S2JA 4ORVA 1YCKA 4OPPA 2WKXA 2XZ8A 3NNOA 1J3GA 4X36A 5DWFA 4IVVA 2Y28A 2F2LX 3C2XA 3QS0A 3CXAA 4BXEA 5CTVA 3T2VA 2EAXA 2Y2CA 2Y2EA 2BH7A 3USXA 2Y2BA 4KNKA 3RDRA 4Q8SA 3T39A 4BPAA 3UILA 3O4KA 3NG4A 4BXJA 1YB0A 3TRUA 4BXDA 3NW3A 3EP1A 4KNLA 4OLSA 1OHTA 3D2ZA 3HMBA 3RT4A 2L47A 2XZ4A 4GF9A 4Z8IA 4BJ4A 3QV4A 3CORA 2CB3A 2R90A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UMQ A;  5E0B A;  4OUG A;  2Y2D A;  2AR3 A;  4ZXM A;  4Q9E A;  2Z9N A;  2APH A;  3QJ1 A;  1TWQ A;  1LBA A;  1SK4 A;  4BOL A;  1SXR A;  3CG9 A;  2EAV A;  5E0A A;  2RKQ A;  2R2K A;  4FNN A;  3D2Y A;  1SK3 A;  1Z6I A;  2F2L A;  1ARO L;  3OGX A;  3UML A;  3LAT A;  1S2J A;  4ORV A;  1YCK A;  4OPP A;  2WKX A;  2XZ8 A;  3NNO A;  1J3G A;  4X36 A;  5DWF A;  4IVV A;  2Y28 A;  2F2L X;  3C2X A;  3QS0 A;  3CXA A;  4BXE A;  5CTV A;  3T2V A;  2EAX A;  2Y2C A;  2Y2E A;  2BH7 A;  3USX A;  2Y2B A;  4KNK A;  3RDR A;  4Q8S A;  3T39 A;  4BPA A;  3UIL A;  3O4K A;  3NG4 A;  4BXJ A;  1YB0 A;  3TRU A;  4BXD A;  3NW3 A;  3EP1 A;  4KNL A;  4OLS A;  1OHT A;  3D2Z A;  3HMB A;  3RT4 A;  2L47 A;  2XZ4 A;  4GF9 A;  4Z8I A;  4BJ4 A;  3QV4 A;  3COR A;  2CB3 A;  2R90 A; 
#chains in the Genus database with same CATH topology
 3UMQ A;  5E0B A;  4OUG A;  2Y2D A;  2AR3 A;  4ZXM A;  4Q9E A;  2Z9N A;  2APH A;  3QJ1 A;  1TWQ A;  1LBA A;  1SK4 A;  4BOL A;  1SXR A;  3CG9 A;  2EAV A;  5E0A A;  2RKQ A;  2R2K A;  4FNN A;  3D2Y A;  1SK3 A;  1Z6I A;  2F2L A;  1ARO L;  3OGX A;  3UML A;  3LAT A;  1S2J A;  4ORV A;  1YCK A;  4OPP A;  2WKX A;  2XZ8 A;  3NNO A;  1J3G A;  4X36 A;  5DWF A;  4IVV A;  2Y28 A;  2F2L X;  3C2X A;  3QS0 A;  3CXA A;  4BXE A;  5CTV A;  3T2V A;  2EAX A;  2Y2C A;  2Y2E A;  2BH7 A;  3USX A;  2Y2B A;  4KNK A;  3RDR A;  4Q8S A;  3T39 A;  4BPA A;  3UIL A;  3O4K A;  3NG4 A;  4BXJ A;  1YB0 A;  3TRU A;  4BXD A;  3NW3 A;  3EP1 A;  4KNL A;  4OLS A;  1OHT A;  3D2Z A;  3HMB A;  3RT4 A;  2L47 A;  2XZ4 A;  4GF9 A;  4Z8I A;  4BJ4 A;  3QV4 A;  3COR A;  2CB3 A;  2R90 A; 
#chains in the Genus database with same CATH homology
 3UMQ A;  5E0B A;  4OUG A;  2Y2D A;  2AR3 A;  4ZXM A;  4Q9E A;  2Z9N A;  2APH A;  3QJ1 A;  1TWQ A;  1LBA A;  1SK4 A;  4BOL A;  1SXR A;  3CG9 A;  2EAV A;  5E0A A;  2RKQ A;  2R2K A;  4FNN A;  3D2Y A;  1SK3 A;  1Z6I A;  2F2L A;  1ARO L;  3OGX A;  3UML A;  3LAT A;  1S2J A;  4ORV A;  1YCK A;  4OPP A;  2WKX A;  2XZ8 A;  3NNO A;  1J3G A;  4X36 A;  5DWF A;  4IVV A;  2Y28 A;  2F2L X;  3C2X A;  3QS0 A;  3CXA A;  4BXE A;  5CTV A;  3T2V A;  2EAX A;  2Y2C A;  2Y2E A;  2BH7 A;  3USX A;  2Y2B A;  4KNK A;  3RDR A;  4Q8S A;  3T39 A;  4BPA A;  3UIL A;  3O4K A;  3NG4 A;  4BXJ A;  1YB0 A;  3TRU A;  4BXD A;  3NW3 A;  3EP1 A;  4KNL A;  4OLS A;  1OHT A;  3D2Z A;  3HMB A;  3RT4 A;  2L47 A;  2XZ4 A;  4GF9 A;  4Z8I A;  4BJ4 A;  3QV4 A;  3COR A;  2CB3 A;  2R90 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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