1SMWA

Crystal structure of cp rd l41a mutant in reduced state 2 (soaked)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
54
structure length
54
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPACGVGKDQFEEVEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Clostridium pasteurianum
publication title The unique hydrogen bonded water in the reduced form of Clostridium pasteurianum rubredoxin and its possible role in electron transfer
pubmed doi rcsb
molecule keywords Rubredoxin
total genus 8
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2004-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1smwA00
5IY0A 4K9FA 4AR6A 1QCVA 2PVEA 1R0JA 1R0FA 1NNQA 1T9OA 1C09A 1YK5A 1RB9A 1LKMA 3KYVA 1YK4A 2KKDA 1BE7A 3QVDA 2MS3A 1CADA 1S2ZA 6RXNA 4RXNA 8RXNA 1B71A 1BQ9A 1BFYA 3RZTA 1LKPA 2KN9A 1H7VA 4POGA 2V3BB 1RYTA 1RWDA 1LTLA 1R0IA 4POFA 4AR3A 1RDVA 1SMWA 3A44A 2PYAA 1T9QA 3PWFA 1JYBA 2GMGA 1B2JA 1S30A 3RYGA 1IROA 1YV1A 3KYYA 3PZAA 4AR4A 3RZ6A 3KYUA 1FHHA 2QL0A 5AI2A 1FHMA 1SMMA 1YUXA 1ZRPA 2M4YA 2K2DA 3KYWA 1B13A 2PVXA 1B2OA 1YUZA 4YWMA 3KYXA 1R0HA 2DSXA 1IU5A 1DVBA 1S24A 1BRFA 1VCXA 1R0GA 2LCQA 4ME3A 2VL6A 4TPUA 1DX8A 2RDVA 1BQ8A 1T9PA 1IRNA 1IU6A 1E8JA 1SMUA 1LKOA 5AI3A 1CAAA 4AR5A 2HR5A 1QYBA 5RXNA 1RDGA 4YWLA 7RXNA 3MPSA 3SS2A
chains in the Genus database with same CATH superfamily
4XXBB 1VZHA 3S15L 2JI2A 1NNQA 2Z3QB 1YK5A 3GTJL 1F4LA 3LPEB 4ZN1B 1CADA 5DM71 4B8CD 5M3ML 3PKIA 1H7VA 4POFA 1RDVA 2A6ED 2JI1A 1SMWA 1I3QL 5GAHc 1TWAL 4JAGA 1TWGL 4QIWP 5IYBL 5M5YL 1YV1A 2XJPA 2V0EA 2WAQP 1K83L 2O5JD 3PL5A 5AI2A 3B0AB 1FHMA 1WJVA 5DM61 3PKJA 5EINC 2M4YA 3GTML 4BY7L 4C3HL 3GTQL 1DVBA 4A3BL 4A3KL 4C3JL 3S1ML 1VCXA 1R0GA 3PIP1 3CQZL 2APOB 5C3EL 4TPUA 1DX8A 4LHNA 1BQ8A 3IU3I 3LNLA 5M3FL 1LKOA 5AI3A 1CAAA 3H9CA 2CR8A 2RFKB 3GTGL 3HJYB 2E2IL 3MPSA 3MSUA 5MF6A 4AI0A 3P2AA 1ODHA 2PSMC 4K9FA 2ERJA 4AR6A 2E2HL 3J7Z1 3LWVB 3KYVA 4A3JL 3LWPB 1IW7D 3QVDA 2NYDA 2R7ZL 5K2ME 1S2ZA 4LHLA 8RXNA 3M4OL 5C4JL 4U671 2H12A 1LKPA 2XJUA 2C6BA 5IP7L 1RYTA 5GAGc 1RWDA 1I50L 1LTLA 1R0IA 4AR3A 5FJ8L 2PYAA 4BBRL 1JYBA 5M5XL 2BE5D 4AI1A 4BY1L 4AI2A 4JADA 2A69D 3K7AL 3WWLA 3MQKB 2NVYL 4ZN3B 4X6AL 1OWBA 3GTKL 5IP9L 2B5ID 3KYYA 3PZAA 2JI3A 4AYBP 1SMMA 4XGHA 5IYCL 3S17L 3M3YL 4AI3A 2XJTA 4C2M1 2XJVA 2VL6A 5C44L 2Y0SP 3JR7A 1IRNA 1E8JA 1SMUA 2ERSA 3S1NL 3S1RL 2E2JL 2PPTA 3PO2L 1RDGA 4A3EL 3GTLL 1TWHL 1RYQA 7RXNA 2ZIXA 3VPBE 4A3ML 4A3DL 3SS2A 5MLC3 2CKAA 2B63L 1SFOL 2JA8L 2M4VA 1NXGA 5IY0A 2XJSA 5JVH1 1QCVA 1R0FA 1C09A 1LKMA 1YK4A 2YU9L 3HJWB 1Y1VL 3S1QL 3S2HL 3GTPL 6RXNA 5H1Sc 3H99A 2V0FA 5MGNA 3H97A 1B71A 1BQ9A 3S2DL 5AN9H 2KN9A 4POGA 4AHXA 2V3BB 2XJQA 5MFZA 3A44A 4AHWA 1T9QA 5JVG1 2GMGA 4V196 1IROA 3K35A 3HOUL 1TWCL 2VUML 3QQCE 3HOVL 2C6AA 2NVXL 4A3LL 4AR4A 3RZ6A 3KYUA 5GADc 1FHHA 1TWFL 3HOXL 4WFN1 4JAFA 3FDJA 1PFVA 1ZRPA 5EIOC 3H0GL 4A3FL 1PZXA 3KYWA 1B13A 2PVXA 1PFUA 3KYXA 1R0HA 2DSXA 1IU5A 2LCQA 2AYJA 3PIO1 1I6HL 2RDVA 2M6PA 1T9PA 3H3VM 3HOZL 5C4XL 3WWNB 2PMZP 1OWCA 3HKZP 5M5WL 2A6HD 3S16L 2R93L 5RXNA 4GS7D 2AUSB 2EY4E 4AHYA 4JAEA 2WB1P 3GTOL 2JA6L 2PVEA 1R0JA 1T9OA 4BBSL 1RB9A 2KKDA 1BE7A 3NFPI 3HOWL 2MS3A 3LWRB 4RXNA 4Y52L 3H9BA 5IYDL 4A3CL 5GAEc 1BFYA 3RZTA 1NXEA 1QQTA 2HVYC 1VZIA 3LWQB 3ZG6A 3PWFA 1B2JA 1S30A 3RYGA 2R92L 3I4NL 4A93L 3HOYL 1WCML 2QL0A 3RZDL 4UY81 1YUXA 2J9UB 2K2DA 3I4ML 4Y7NL 2L0ZA 1YUZA 1B2OA 4YWMA 2CKCA 4TVMA 1VZGA 2AQCA 3PO3L 2XJRA 1S24A 2A68D 1BRFA 2JA7L 3LWOB 3B08B 3P8BA 1R9TL 4AHZA 1Z92B 4G6BA 4ME3A 1P7PA 1Y1WL 4A3GL 1PFYA 3S14L 1IU6A 3FKIL 5MFPA 3HAXC 4E6YA 5FLML 4AR5A 3RZOL 2HR5A 1QYBA 4C3IL 4YWLA 2NVTL 2JA5L 4BXXL 2Z3RB 4A3IL 3J7Y1 1PFWA 2M6OA 2NVQL
chains in the Genus database with same CATH topology
5IY0A 4XXBB 2XJSA 2PSMC 1VZHA 4K9FA 2ERJA 4AR6A 5JVH1 1QCVA 2PVEA 1R0JA 2JI2A 1R0FA 1NNQA 1T9OA 2Z3QB 3J7Z1 1C09A 1YK5A 1RB9A 1LKMA 3KYVA 1YK4A 2KKDA 1BE7A 1IW7D 2NYDA 3NFPI 3QVDA 3LPEB 5K2ME 4ZN1B 2MS3A 1CADA 5DM71 1S2ZA 4LHLA 6RXNA 5H1Sc 4RXNA 2V0FA 4B8CD 5MGNA 8RXNA 1B71A 1BQ9A 5GAEc 4U671 5AN9H 3PKIA 1BFYA 3RZTA 1NXEA 2H12A 1LKPA 2KN9A 2XJUA 1H7VA 2C6BA 4POGA 4AHXA 1RYTA 2V3BB 5GAGc 1RWDA 2XJQA 1LTLA 1R0IA 4POFA 4AR3A 1VZIA 1RDVA 2A6ED 2JI1A 3ZG6A 5MFZA 1SMWA 3A44A 2PYAA 4AHWA 1T9QA 5JVG1 3PWFA 5GAHc 1JYBA 2BE5D 2GMGA 1B2JA 4JAGA 1S30A 4JADA 3RYGA 1IROA 2A69D 3K35A 4AI1A 4AI2A 4V196 3WWLA 3QQCE 2C6AA 4ZN3B 1YV1A 1OWBA 2B5ID 3KYYA 2XJPA 3PZAA 4AR4A 2V0EA 3RZ6A 3KYUA 5GADc 1FHHA 2QL0A 2JI3A 2O5JD 5AI2A 4UY81 3B0AB 1FHMA 1WJVA 1SMMA 5DM61 4WFN1 4JAFA 1YUXA 4XGHA 2J9UB 1ZRPA 5EIOC 3PKJA 5EINC 2M4YA 2K2DA 3KYWA 2L0ZA 1B13A 2PVXA 1B2OA 1YUZA 4YWMA 4AI3A 3KYXA 1R0HA 2CKCA 4TVMA 2DSXA 1VZGA 1IU5A 2XJRA 2XJTA 1DVBA 1S24A 2XJVA 2A68D 1BRFA 3B08B 3P8BA 1VCXA 1R0GA 2LCQA 3PIP1 4AHZA 1Z92B 2AYJA 4G6BA 4ME3A 3PIO1 2VL6A 4TPUA 1DX8A 2RDVA 4LHNA 2M6PA 1BQ8A 1T9PA 3IU3I 3LNLA 1IRNA 1IU6A 1E8JA 3WWNB 1SMUA 5MFPA 1LKOA 4E6YA 2ERSA 5AI3A 1CAAA 4AR5A 1OWCA 2CR8A 2A6HD 2HR5A 2PPTA 1QYBA 5RXNA 1RDGA 4YWLA 4GS7D 1RYQA 7RXNA 2ZIXA 3MPSA 3MSUA 3VPBE 5MF6A 4AHYA 3SS2A 5MLC3 2CKAA 4JAEA 2Z3RB 2M4VA 4AI0A 3P2AA 3J7Y1 1NXGA 1ODHA 2M6OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IY0 A;  4K9F A;  4AR6 A;  1QCV A;  2PVE A;  1R0J A;  1R0F A;  1NNQ A;  1T9O A;  1C09 A;  1YK5 A;  1RB9 A;  1LKM A;  3KYV A;  1YK4 A;  2KKD A;  1BE7 A;  3QVD A;  2MS3 A;  1CAD A;  1S2Z A;  6RXN A;  4RXN A;  8RXN A;  1B71 A;  1BQ9 A;  1BFY A;  3RZT A;  1LKP A;  2KN9 A;  1H7V A;  4POG A;  2V3B B;  1RYT A;  1RWD A;  1LTL A;  1R0I A;  4POF A;  4AR3 A;  1RDV A;  1SMW A;  3A44 A;  2PYA A;  1T9Q A;  3PWF A;  1JYB A;  2GMG A;  1B2J A;  1S30 A;  3RYG A;  1IRO A;  1YV1 A;  3KYY A;  3PZA A;  4AR4 A;  3RZ6 A;  3KYU A;  1FHH A;  2QL0 A;  5AI2 A;  1FHM A;  1SMM A;  1YUX A;  1ZRP A;  2M4Y A;  2K2D A;  3KYW A;  1B13 A;  2PVX A;  1B2O A;  1YUZ A;  4YWM A;  3KYX A;  1R0H A;  2DSX A;  1IU5 A;  1DVB A;  1S24 A;  1BRF A;  1VCX A;  1R0G A;  2LCQ A;  4ME3 A;  2VL6 A;  4TPU A;  1DX8 A;  2RDV A;  1BQ8 A;  1T9P A;  1IRN A;  1IU6 A;  1E8J A;  1SMU A;  1LKO A;  5AI3 A;  1CAA A;  4AR5 A;  2HR5 A;  1QYB A;  5RXN A;  1RDG A;  4YWL A;  7RXN A;  3MPS A;  3SS2 A; 
#chains in the Genus database with same CATH topology
 4XXB B;  1VZH A;  3S15 L;  2JI2 A;  1NNQ A;  2Z3Q B;  1YK5 A;  3GTJ L;  1F4L A;  3LPE B;  4ZN1 B;  1CAD A;  5DM7 1;  4B8C D;  5M3M L;  3PKI A;  1H7V A;  4POF A;  1RDV A;  2A6E D;  2JI1 A;  1SMW A;  1I3Q L;  5GAH c;  1TWA L;  4JAG A;  1TWG L;  4QIW P;  5IYB L;  5M5Y L;  1YV1 A;  2XJP A;  2V0E A;  2WAQ P;  1K83 L;  2O5J D;  3PL5 A;  5AI2 A;  3B0A B;  1FHM A;  1WJV A;  5DM6 1;  3PKJ A;  5EIN C;  2M4Y A;  3GTM L;  4BY7 L;  4C3H L;  3GTQ L;  1DVB A;  4A3B L;  4A3K L;  4C3J L;  3S1M L;  1VCX A;  1R0G A;  3PIP 1;  3CQZ L;  2APO B;  5C3E L;  4TPU A;  1DX8 A;  4LHN A;  1BQ8 A;  3IU3 I;  3LNL A;  5M3F L;  1LKO A;  5AI3 A;  1CAA A;  3H9C A;  2CR8 A;  2RFK B;  3GTG L;  3HJY B;  2E2I L;  3MPS A;  3MSU A;  5MF6 A;  4AI0 A;  3P2A A;  1ODH A;  2PSM C;  4K9F A;  2ERJ A;  4AR6 A;  2E2H L;  3J7Z 1;  3LWV B;  3KYV A;  4A3J L;  3LWP B;  1IW7 D;  3QVD A;  2NYD A;  2R7Z L;  5K2M E;  1S2Z A;  4LHL A;  8RXN A;  3M4O L;  5C4J L;  4U67 1;  2H12 A;  1LKP A;  2XJU A;  2C6B A;  5IP7 L;  1RYT A;  5GAG c;  1RWD A;  1I50 L;  1LTL A;  1R0I A;  4AR3 A;  5FJ8 L;  2PYA A;  4BBR L;  1JYB A;  5M5X L;  2BE5 D;  4AI1 A;  4BY1 L;  4AI2 A;  4JAD A;  2A69 D;  3K7A L;  3WWL A;  3MQK B;  2NVY L;  4ZN3 B;  4X6A L;  1OWB A;  3GTK L;  5IP9 L;  2B5I D;  3KYY A;  3PZA A;  2JI3 A;  4AYB P;  1SMM A;  4XGH A;  5IYC L;  3S17 L;  3M3Y L;  4AI3 A;  2XJT A;  4C2M 1;  2XJV A;  2VL6 A;  5C44 L;  2Y0S P;  3JR7 A;  1IRN A;  1E8J A;  1SMU A;  2ERS A;  3S1N L;  3S1R L;  2E2J L;  2PPT A;  3PO2 L;  1RDG A;  4A3E L;  3GTL L;  1TWH L;  1RYQ A;  7RXN A;  2ZIX A;  3VPB E;  4A3M L;  4A3D L;  3SS2 A;  5MLC 3;  2CKA A;  2B63 L;  1SFO L;  2JA8 L;  2M4V A;  1NXG A;  5IY0 A;  2XJS A;  5JVH 1;  1QCV A;  1R0F A;  1C09 A;  1LKM A;  1YK4 A;  2YU9 L;  3HJW B;  1Y1V L;  3S1Q L;  3S2H L;  3GTP L;  6RXN A;  5H1S c;  3H99 A;  2V0F A;  5MGN A;  3H97 A;  1B71 A;  1BQ9 A;  3S2D L;  5AN9 H;  2KN9 A;  4POG A;  4AHX A;  2V3B B;  2XJQ A;  5MFZ A;  3A44 A;  4AHW A;  1T9Q A;  5JVG 1;  2GMG A;  4V19 6;  1IRO A;  3K35 A;  3HOU L;  1TWC L;  2VUM L;  3QQC E;  3HOV L;  2C6A A;  2NVX L;  4A3L L;  4AR4 A;  3RZ6 A;  3KYU A;  5GAD c;  1FHH A;  1TWF L;  3HOX L;  4WFN 1;  4JAF A;  3FDJ A;  1PFV A;  1ZRP A;  5EIO C;  3H0G L;  4A3F L;  1PZX A;  3KYW A;  1B13 A;  2PVX A;  1PFU A;  3KYX A;  1R0H A;  2DSX A;  1IU5 A;  2LCQ A;  2AYJ A;  3PIO 1;  1I6H L;  2RDV A;  2M6P A;  1T9P A;  3H3V M;  3HOZ L;  5C4X L;  3WWN B;  2PMZ P;  1OWC A;  3HKZ P;  5M5W L;  2A6H D;  3S16 L;  2R93 L;  5RXN A;  4GS7 D;  2AUS B;  2EY4 E;  4AHY A;  4JAE A;  2WB1 P;  3GTO L;  2JA6 L;  2PVE A;  1R0J A;  1T9O A;  4BBS L;  1RB9 A;  2KKD A;  1BE7 A;  3NFP I;  3HOW L;  2MS3 A;  3LWR B;  4RXN A;  4Y52 L;  3H9B A;  5IYD L;  4A3C L;  5GAE c;  1BFY A;  3RZT A;  1NXE A;  1QQT A;  2HVY C;  1VZI A;  3LWQ B;  3ZG6 A;  3PWF A;  1B2J A;  1S30 A;  3RYG A;  2R92 L;  3I4N L;  4A93 L;  3HOY L;  1WCM L;  2QL0 A;  3RZD L;  4UY8 1;  1YUX A;  2J9U B;  2K2D A;  3I4M L;  4Y7N L;  2L0Z A;  1YUZ A;  1B2O A;  4YWM A;  2CKC A;  4TVM A;  1VZG A;  2AQC A;  3PO3 L;  2XJR A;  1S24 A;  2A68 D;  1BRF A;  2JA7 L;  3LWO B;  3B08 B;  3P8B A;  1R9T L;  4AHZ A;  1Z92 B;  4G6B A;  4ME3 A;  1P7P A;  1Y1W L;  4A3G L;  1PFY A;  3S14 L;  1IU6 A;  3FKI L;  5MFP A;  3HAX C;  4E6Y A;  5FLM L;  4AR5 A;  3RZO L;  2HR5 A;  1QYB A;  4C3I L;  4YWL A;  2NVT L;  2JA5 L;  4BXX L;  2Z3R B;  4A3I L;  3J7Y 1;  1PFW A;  2M6O A;  2NVQ L; 
#chains in the Genus database with same CATH homology
 5IY0 A;  4XXB B;  2XJS A;  2PSM C;  1VZH A;  4K9F A;  2ERJ A;  4AR6 A;  5JVH 1;  1QCV A;  2PVE A;  1R0J A;  2JI2 A;  1R0F A;  1NNQ A;  1T9O A;  2Z3Q B;  3J7Z 1;  1C09 A;  1YK5 A;  1RB9 A;  1LKM A;  3KYV A;  1YK4 A;  2KKD A;  1BE7 A;  1IW7 D;  2NYD A;  3NFP I;  3QVD A;  3LPE B;  5K2M E;  4ZN1 B;  2MS3 A;  1CAD A;  5DM7 1;  1S2Z A;  4LHL A;  6RXN A;  5H1S c;  4RXN A;  2V0F A;  4B8C D;  5MGN A;  8RXN A;  1B71 A;  1BQ9 A;  5GAE c;  4U67 1;  5AN9 H;  3PKI A;  1BFY A;  3RZT A;  1NXE A;  2H12 A;  1LKP A;  2KN9 A;  2XJU A;  1H7V A;  2C6B A;  4POG A;  4AHX A;  1RYT A;  2V3B B;  5GAG c;  1RWD A;  2XJQ A;  1LTL A;  1R0I A;  4POF A;  4AR3 A;  1VZI A;  1RDV A;  2A6E D;  2JI1 A;  3ZG6 A;  5MFZ A;  1SMW A;  3A44 A;  2PYA A;  4AHW A;  1T9Q A;  5JVG 1;  3PWF A;  5GAH c;  1JYB A;  2BE5 D;  2GMG A;  1B2J A;  4JAG A;  1S30 A;  4JAD A;  3RYG A;  1IRO A;  2A69 D;  3K35 A;  4AI1 A;  4AI2 A;  4V19 6;  3WWL A;  3QQC E;  2C6A A;  4ZN3 B;  1YV1 A;  1OWB A;  2B5I D;  3KYY A;  2XJP A;  3PZA A;  4AR4 A;  2V0E A;  3RZ6 A;  3KYU A;  5GAD c;  1FHH A;  2QL0 A;  2JI3 A;  2O5J D;  5AI2 A;  4UY8 1;  3B0A B;  1FHM A;  1WJV A;  1SMM A;  5DM6 1;  4WFN 1;  4JAF A;  1YUX A;  4XGH A;  2J9U B;  1ZRP A;  5EIO C;  3PKJ A;  5EIN C;  2M4Y A;  2K2D A;  3KYW A;  2L0Z A;  1B13 A;  2PVX A;  1B2O A;  1YUZ A;  4YWM A;  4AI3 A;  3KYX A;  1R0H A;  2CKC A;  4TVM A;  2DSX A;  1VZG A;  1IU5 A;  2XJR A;  2XJT A;  1DVB A;  1S24 A;  2XJV A;  2A68 D;  1BRF A;  3B08 B;  3P8B A;  1VCX A;  1R0G A;  2LCQ A;  3PIP 1;  4AHZ A;  1Z92 B;  2AYJ A;  4G6B A;  4ME3 A;  3PIO 1;  2VL6 A;  4TPU A;  1DX8 A;  2RDV A;  4LHN A;  2M6P A;  1BQ8 A;  1T9P A;  3IU3 I;  3LNL A;  1IRN A;  1IU6 A;  1E8J A;  3WWN B;  1SMU A;  5MFP A;  1LKO A;  4E6Y A;  2ERS A;  5AI3 A;  1CAA A;  4AR5 A;  1OWC A;  2CR8 A;  2A6H D;  2HR5 A;  2PPT A;  1QYB A;  5RXN A;  1RDG A;  4YWL A;  4GS7 D;  1RYQ A;  7RXN A;  2ZIX A;  3MPS A;  3MSU A;  3VPB E;  5MF6 A;  4AHY A;  3SS2 A;  5MLC 3;  2CKA A;  4JAE A;  2Z3R B;  2M4V A;  4AI0 A;  3P2A A;  3J7Y 1;  1NXG A;  1ODH A;  2M6O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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