1SOYA

Solution structure of the bacterial frataxin orthologue, cyay
Total Genus 23
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
106
structure length
106
Chain Sequence
MNDSEFHRLADQLWLTIEERLDDWDGDSDIDCEINGGVLTITFENGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGETVSFR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Unknown function
molecule keywords CyaY protein
publication title Solution Structure of the Bacterial Frataxin Ortholog, CyaY; Mapping the Iron Binding Sites
pubmed doi rcsb
source organism Escherichia coli
total genus 23
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2004-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01491 Frataxin_Cyay Frataxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.10 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Frataxin/CyaY 1soyA00
3S5DA 3T3JA 2FQLA 1EKGA 2EFFA 1LY7A 3S4MA 4LP1A 4JPDA 3OERA 3T3KA 3S5EA 2P1XA 3T3TA 3T3LA 4LK8A 1SOYA 4HS5A 4EC2A 3OEQA 3S5FA 2GA5A 3T3XA 1EW4A
chains in the Genus database with same CATH superfamily
1V5RA 4P78C 3S5DA 4C26A 3T3JA 3SSCA 2FQLA 1EKGA 2EFFA 1D2MA 1LY7A 3S4MA 4LP1A 4JPDA 3OERA 3T3KA 3SSEA 3S5EA 2P1XA 3T3TA 3T3LA 4LK8A 3SSDA 1SOYA 4HS5A 2FUG7 3A5PA 3GD9A 3IAS7 3GD0A 3I9V7 4EC2A 3IAM7 3OEQA 3S5FA 2GA5A 1WHZA 4HEA7 3T3XA 3IMOA 1EW4A
chains in the Genus database with same CATH topology
3S5DA 3T3JA 2FQLA 1EKGA 2EFFA 1LY7A 3S4MA 4LP1A 4JPDA 3OERA 3T3KA 3S5EA 2P1XA 3T3TA 3T3LA 4LK8A 1SOYA 4HS5A 4EC2A 3OEQA 3S5FA 2GA5A 3T3XA 1EW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S5D A;  3T3J A;  2FQL A;  1EKG A;  2EFF A;  1LY7 A;  3S4M A;  4LP1 A;  4JPD A;  3OER A;  3T3K A;  3S5E A;  2P1X A;  3T3T A;  3T3L A;  4LK8 A;  1SOY A;  4HS5 A;  4EC2 A;  3OEQ A;  3S5F A;  2GA5 A;  3T3X A;  1EW4 A; 
#chains in the Genus database with same CATH topology
 1V5R A;  4P78 C;  3S5D A;  4C26 A;  3T3J A;  3SSC A;  2FQL A;  1EKG A;  2EFF A;  1D2M A;  1LY7 A;  3S4M A;  4LP1 A;  4JPD A;  3OER A;  3T3K A;  3SSE A;  3S5E A;  2P1X A;  3T3T A;  3T3L A;  4LK8 A;  3SSD A;  1SOY A;  4HS5 A;  2FUG 7;  3A5P A;  3GD9 A;  3IAS 7;  3GD0 A;  3I9V 7;  4EC2 A;  3IAM 7;  3OEQ A;  3S5F A;  2GA5 A;  1WHZ A;  4HEA 7;  3T3X A;  3IMO A;  1EW4 A; 
#chains in the Genus database with same CATH homology
 3S5D A;  3T3J A;  2FQL A;  1EKG A;  2EFF A;  1LY7 A;  3S4M A;  4LP1 A;  4JPD A;  3OER A;  3T3K A;  3S5E A;  2P1X A;  3T3T A;  3T3L A;  4LK8 A;  1SOY A;  4HS5 A;  4EC2 A;  3OEQ A;  3S5F A;  2GA5 A;  3T3X A;  1EW4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...