1ST7A

Solution structure of acyl coenzyme a binding protein from yeast
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
86
structure length
86
Chain Sequence
b'VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIAKYSS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Different secondary structure elements as scaffolds for protein folding transition states of two homologous four-helix bundles
pubmed doi rcsb
molecule keywords Acyl-CoA-binding protein
source organism Saccharomyces cerevisiae
molecule tags Transport protein
total genus 30
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2004-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 1st7A00
3U7DA 3FLVA 4ZRKA 3U8ZA 4EKUA 1MIZB 4ZRIA 3G9WA 3ZDTA 3AU5A 2FJ9A 1MK7B 3BINA 1ISNA 1MK9B 2LBBA 2CQUA 2J0KA 1NTIA 2J0JA 3PZDA 2J0MA 4YL8A 1HB6A 2AEHA 2FDQA 2RQ1A 1J19A 1GC6A 2D11A 4DXAB 1EF1A 1GG3A 2D10A 4NY0A 3FP5A 3IVFA 1H4RA 2ABDA 2AL6A 1HB8A 1NI2A 2D2QA 3EPYA 4HDQA 4F7GA 2I1KA 1MIXA 1E5WA 5IJMA 3AU4A 2YVCA 4HDOA 4CYEA 2CB8A 2HE7A 1NVLA 4ZRJA 1GC7A 2I1JA 1HBKA 1ACAA 1SGHA 3PVLA 3X23A 1ST7A 2HRJA 3QIJA 4P7IA 1Y19B 3WA0A 2ZPYA 2COPA 2EMSA 2EMTA 2WH5A
chains in the Genus database with same CATH superfamily
4JKEA 2FJ9A 4ILJA 3BINA 1ISNA 3PZDA 2J0MA 2AEHA 3E9OA 2FDQA 2RQ1A 4JKGA 4DXAB 1GG3A 3FP5A 4JK9A 4CYEA 4JKGB 1KBLA 2I1JA 1JDEA 4JK7A 4JKBA 3ENBA 5JVLA 3FLVA 4ZRKA 4JK8A 3G9WA 3ZDTA 3AU5A 1MK7B 2LBBA 1NTIA 4YL8A 1DIKA 1GGOA 1GC6A 4JKCA 2D10A 4TKNA 2ABDA 3EPYA 2R82A 2YVCA 2CB8A 1ACAA 1ST7A 3QIJA 2X0SA 3WA0A 2WH5A 3U8ZA 4JKFA 3SBTA 4EKUA 4ZRIA 3E9LA 1MK9B 2CQUA 1KC7A 1HB6A 1J19A 4GXBA 3IVFA 2AL6A 1MIXA 2DIKA 2HE7A 1NVLA 3E66A 1SGHA 2ZPYA 3AU4A 4ZRJA 3U7DA 4JKAA 1MIZB 3E9PA 3SBGA 2J0KA 2J0JA 4ILGB 1VBGA 2D11A 4JKHA 1EF1A 4NY0A 4ILHA 4JKDA 1H4RA 4F7GA 1HB8A 1NI2A 2D2QA 4HDQA 5IJMA 2I1KA 1E5WA 4HDOA 1GC7A 1HBKA 3PVLA 3X23A 2HRJA 4P7IA 1Y19B 1VBHA 2COPA 2EMSA 2EMTA
chains in the Genus database with same CATH topology
4JKEA 2FJ9A 4ILJA 3BINA 1ISNA 3PZDA 2J0MA 2AEHA 3E9OA 2FDQA 2RQ1A 4JKGA 4DXAB 1GG3A 3FP5A 4JK9A 4CYEA 4JKGB 1KBLA 2I1JA 1JDEA 4JK7A 4JKBA 3ENBA 5JVLA 3FLVA 4ZRKA 4JK8A 3G9WA 3ZDTA 3AU5A 1MK7B 2LBBA 1NTIA 4YL8A 1DIKA 1GGOA 1GC6A 4JKCA 2D10A 4TKNA 2ABDA 3EPYA 2R82A 2YVCA 2CB8A 1ACAA 1ST7A 3QIJA 2X0SA 3WA0A 2WH5A 3U8ZA 4JKFA 3SBTA 4EKUA 4ZRIA 3E9LA 1MK9B 2CQUA 1KC7A 1HB6A 1J19A 4GXBA 3IVFA 2AL6A 1MIXA 2DIKA 2HE7A 1NVLA 3E66A 1SGHA 2ZPYA 3AU4A 4ZRJA 3U7DA 4JKAA 1MIZB 3E9PA 3SBGA 2J0KA 2J0JA 4ILGB 1VBGA 2D11A 4JKHA 1EF1A 4NY0A 4ILHA 4JKDA 1H4RA 4F7GA 1HB8A 1NI2A 2D2QA 4HDQA 5IJMA 2I1KA 1E5WA 4HDOA 1GC7A 1HBKA 3PVLA 3X23A 2HRJA 4P7IA 1Y19B 1VBHA 2COPA 2EMSA 2EMTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U7D A;  3FLV A;  4ZRK A;  3U8Z A;  4EKU A;  1MIZ B;  4ZRI A;  3G9W A;  3ZDT A;  3AU5 A;  2FJ9 A;  1MK7 B;  3BIN A;  1ISN A;  1MK9 B;  2LBB A;  2CQU A;  2J0K A;  1NTI A;  2J0J A;  3PZD A;  2J0M A;  4YL8 A;  1HB6 A;  2AEH A;  2FDQ A;  2RQ1 A;  1J19 A;  1GC6 A;  2D11 A;  4DXA B;  1EF1 A;  1GG3 A;  2D10 A;  4NY0 A;  3FP5 A;  3IVF A;  1H4R A;  2ABD A;  2AL6 A;  1HB8 A;  1NI2 A;  2D2Q A;  3EPY A;  4HDQ A;  4F7G A;  2I1K A;  1MIX A;  1E5W A;  5IJM A;  3AU4 A;  2YVC A;  4HDO A;  4CYE A;  2CB8 A;  2HE7 A;  1NVL A;  4ZRJ A;  1GC7 A;  2I1J A;  1HBK A;  1ACA A;  1SGH A;  3PVL A;  3X23 A;  1ST7 A;  2HRJ A;  3QIJ A;  4P7I A;  1Y19 B;  3WA0 A;  2ZPY A;  2COP A;  2EMS A;  2EMT A;  2WH5 A; 
#chains in the Genus database with same CATH topology
 4JKE A;  2FJ9 A;  4ILJ A;  3BIN A;  1ISN A;  3PZD A;  2J0M A;  2AEH A;  3E9O A;  2FDQ A;  2RQ1 A;  4JKG A;  4DXA B;  1GG3 A;  3FP5 A;  4JK9 A;  4CYE A;  4JKG B;  1KBL A;  2I1J A;  1JDE A;  4JK7 A;  4JKB A;  3ENB A;  5JVL A;  3FLV A;  4ZRK A;  4JK8 A;  3G9W A;  3ZDT A;  3AU5 A;  1MK7 B;  2LBB A;  1NTI A;  4YL8 A;  1DIK A;  1GGO A;  1GC6 A;  4JKC A;  2D10 A;  4TKN A;  2ABD A;  3EPY A;  2R82 A;  2YVC A;  2CB8 A;  1ACA A;  1ST7 A;  3QIJ A;  2X0S A;  3WA0 A;  2WH5 A;  3U8Z A;  4JKF A;  3SBT A;  4EKU A;  4ZRI A;  3E9L A;  1MK9 B;  2CQU A;  1KC7 A;  1HB6 A;  1J19 A;  4GXB A;  3IVF A;  2AL6 A;  1MIX A;  2DIK A;  2HE7 A;  1NVL A;  3E66 A;  1SGH A;  2ZPY A;  3AU4 A;  4ZRJ A;  3U7D A;  4JKA A;  1MIZ B;  3E9P A;  3SBG A;  2J0K A;  2J0J A;  4ILG B;  1VBG A;  2D11 A;  4JKH A;  1EF1 A;  4NY0 A;  4ILH A;  4JKD A;  1H4R A;  4F7G A;  1HB8 A;  1NI2 A;  2D2Q A;  4HDQ A;  5IJM A;  2I1K A;  1E5W A;  4HDO A;  1GC7 A;  1HBK A;  3PVL A;  3X23 A;  2HRJ A;  4P7I A;  1Y19 B;  1VBH A;  2COP A;  2EMS A;  2EMT A; 
#chains in the Genus database with same CATH homology
 4JKE A;  2FJ9 A;  4ILJ A;  3BIN A;  1ISN A;  3PZD A;  2J0M A;  2AEH A;  3E9O A;  2FDQ A;  2RQ1 A;  4JKG A;  4DXA B;  1GG3 A;  3FP5 A;  4JK9 A;  4CYE A;  4JKG B;  1KBL A;  2I1J A;  1JDE A;  4JK7 A;  4JKB A;  3ENB A;  5JVL A;  3FLV A;  4ZRK A;  4JK8 A;  3G9W A;  3ZDT A;  3AU5 A;  1MK7 B;  2LBB A;  1NTI A;  4YL8 A;  1DIK A;  1GGO A;  1GC6 A;  4JKC A;  2D10 A;  4TKN A;  2ABD A;  3EPY A;  2R82 A;  2YVC A;  2CB8 A;  1ACA A;  1ST7 A;  3QIJ A;  2X0S A;  3WA0 A;  2WH5 A;  3U8Z A;  4JKF A;  3SBT A;  4EKU A;  4ZRI A;  3E9L A;  1MK9 B;  2CQU A;  1KC7 A;  1HB6 A;  1J19 A;  4GXB A;  3IVF A;  2AL6 A;  1MIX A;  2DIK A;  2HE7 A;  1NVL A;  3E66 A;  1SGH A;  2ZPY A;  3AU4 A;  4ZRJ A;  3U7D A;  4JKA A;  1MIZ B;  3E9P A;  3SBG A;  2J0K A;  2J0J A;  4ILG B;  1VBG A;  2D11 A;  4JKH A;  1EF1 A;  4NY0 A;  4ILH A;  4JKD A;  1H4R A;  4F7G A;  1HB8 A;  1NI2 A;  2D2Q A;  4HDQ A;  5IJM A;  2I1K A;  1E5W A;  4HDO A;  1GC7 A;  1HBK A;  3PVL A;  3X23 A;  2HRJ A;  4P7I A;  1Y19 B;  1VBH A;  2COP A;  2EMS A;  2EMT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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