1ST7A

Solution structure of acyl coenzyme a binding protein from yeast
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
86
structure length
86
Chain Sequence
VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIAKYSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Saccharomyces cerevisiae
publication title Different secondary structure elements as scaffolds for protein folding transition states of two homologous four-helix bundles
pubmed doi rcsb
molecule keywords Acyl-CoA-binding protein
total genus 30
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2004-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 1st7A00
1HBKA 2J0KA 2AEHA 2HE7A 2HRJA 4HDOA 1MK9B 2COPA 2FJ9A 1ST7A 1ACAA 3QIJA 3EPYA 3AU4A 3BINA 1Y19B 1J19A 1NVLA 2CB8A 2ZPYA 4DXAB 4ZRKA 3AU5A 1HB6A 2D2QA 3PVLA 3G9WA 4F7GA 4ZRIA 4ZRJA 2EMTA 2I1KA 3FP5A 3WA0A 1MK7B 1ISNA 3PZDA 1NI2A 2AL6A 2J0JA 2CQUA 5IJMA 2LBBA 1NTIA 1H4RA 2YVCA 1MIXA 4HDQA 1E5WA 2D10A 2FDQA 1GC7A 4P7IA 3X23A 3ZDTA 1MIZB 3U7DA 4CYEA 2ABDA 4YL8A 2J0MA 2RQ1A 1GC6A 3IVFA 2I1JA 4NY0A 2EMSA 1HB8A 1SGHA 2D11A 2WH5A 1EF1A 3U8ZA 3FLVA 4EKUA 1GG3A
chains in the Genus database with same CATH superfamily
4HDOA 4ILJA 2HE7A 2HRJA 2FJ9A 4JK8A 3PVLA 4F7GA 2AL6A 4JKHA 2CQUA 4JKEA 1NTIA 4HDQA 4CYEA 1MIZB 2ABDA 4YL8A 1KC7A 1GC6A 5JVLA 3IVFA 1HB8A 4JK9A 2D11A 1EF1A 3U8ZA 4ILHA 4EKUA 2COPA 3BINA 3ENBA 1J19A 2ZPYA 4ZRKA 4ILGB 2D2QA 3G9WA 4JKAA 3FP5A 1MK7B 4JK7A 2YVCA 3E66A 4TKNA 4P7IA 2EMSA 4JKBA 3SBTA 1VBHA 1HBKA 2J0KA 1MK9B 1ST7A 2R82A 1ACAA 3EPYA 2DIKA 2CB8A 4DXAB 4ZRIA 2EMTA 4JKGA 3PZDA 1NI2A 2J0JA 4JKFA 2LBBA 3E9LA 1E5WA 2D10A 2FDQA 1GC7A 3ZDTA 3U7DA 2RQ1A 1JDEA 2I1JA 4JKCA 4NY0A 2WH5A 3FLVA 1DIKA 2AEHA 3E9PA 1VBGA 3QIJA 3AU4A 1Y19B 1NVLA 3AU5A 1HB6A 2X0SA 4ZRJA 2I1KA 3WA0A 1ISNA 5IJMA 1H4RA 4JKGB 1MIXA 3SBGA 3X23A 4GXBA 2J0MA 3E9OA 1KBLA 1SGHA 1GGOA 4JKDA 1GG3A
chains in the Genus database with same CATH topology
4HDOA 4ILJA 2HE7A 2HRJA 2FJ9A 4JK8A 3PVLA 4F7GA 2AL6A 4JKHA 2CQUA 4JKEA 1NTIA 4HDQA 4CYEA 1MIZB 2ABDA 4YL8A 1KC7A 1GC6A 5JVLA 3IVFA 1HB8A 4JK9A 2D11A 1EF1A 3U8ZA 4ILHA 4EKUA 2COPA 3BINA 3ENBA 1J19A 2ZPYA 4ZRKA 4ILGB 2D2QA 3G9WA 4JKAA 3FP5A 1MK7B 4JK7A 2YVCA 3E66A 4TKNA 4P7IA 2EMSA 4JKBA 3SBTA 1VBHA 1HBKA 2J0KA 1MK9B 1ST7A 2R82A 1ACAA 3EPYA 2DIKA 2CB8A 4DXAB 4ZRIA 2EMTA 4JKGA 3PZDA 1NI2A 2J0JA 4JKFA 2LBBA 3E9LA 1E5WA 2D10A 2FDQA 1GC7A 3ZDTA 3U7DA 2RQ1A 1JDEA 2I1JA 4JKCA 4NY0A 2WH5A 3FLVA 1DIKA 2AEHA 3E9PA 1VBGA 3QIJA 3AU4A 1Y19B 1NVLA 3AU5A 1HB6A 2X0SA 4ZRJA 2I1KA 3WA0A 1ISNA 5IJMA 1H4RA 4JKGB 1MIXA 3SBGA 3X23A 4GXBA 2J0MA 3E9OA 1KBLA 1SGHA 1GGOA 4JKDA 1GG3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HBK A;  2J0K A;  2AEH A;  2HE7 A;  2HRJ A;  4HDO A;  1MK9 B;  2COP A;  2FJ9 A;  1ST7 A;  1ACA A;  3QIJ A;  3EPY A;  3AU4 A;  3BIN A;  1Y19 B;  1J19 A;  1NVL A;  2CB8 A;  2ZPY A;  4DXA B;  4ZRK A;  3AU5 A;  1HB6 A;  2D2Q A;  3PVL A;  3G9W A;  4F7G A;  4ZRI A;  4ZRJ A;  2EMT A;  2I1K A;  3FP5 A;  3WA0 A;  1MK7 B;  1ISN A;  3PZD A;  1NI2 A;  2AL6 A;  2J0J A;  2CQU A;  5IJM A;  2LBB A;  1NTI A;  1H4R A;  2YVC A;  1MIX A;  4HDQ A;  1E5W A;  2D10 A;  2FDQ A;  1GC7 A;  4P7I A;  3X23 A;  3ZDT A;  1MIZ B;  3U7D A;  4CYE A;  2ABD A;  4YL8 A;  2J0M A;  2RQ1 A;  1GC6 A;  3IVF A;  2I1J A;  4NY0 A;  2EMS A;  1HB8 A;  1SGH A;  2D11 A;  2WH5 A;  1EF1 A;  3U8Z A;  3FLV A;  4EKU A;  1GG3 A; 
#chains in the Genus database with same CATH topology
 4HDO A;  4ILJ A;  2HE7 A;  2HRJ A;  2FJ9 A;  4JK8 A;  3PVL A;  4F7G A;  2AL6 A;  4JKH A;  2CQU A;  4JKE A;  1NTI A;  4HDQ A;  4CYE A;  1MIZ B;  2ABD A;  4YL8 A;  1KC7 A;  1GC6 A;  5JVL A;  3IVF A;  1HB8 A;  4JK9 A;  2D11 A;  1EF1 A;  3U8Z A;  4ILH A;  4EKU A;  2COP A;  3BIN A;  3ENB A;  1J19 A;  2ZPY A;  4ZRK A;  4ILG B;  2D2Q A;  3G9W A;  4JKA A;  3FP5 A;  1MK7 B;  4JK7 A;  2YVC A;  3E66 A;  4TKN A;  4P7I A;  2EMS A;  4JKB A;  3SBT A;  1VBH A;  1HBK A;  2J0K A;  1MK9 B;  1ST7 A;  2R82 A;  1ACA A;  3EPY A;  2DIK A;  2CB8 A;  4DXA B;  4ZRI A;  2EMT A;  4JKG A;  3PZD A;  1NI2 A;  2J0J A;  4JKF A;  2LBB A;  3E9L A;  1E5W A;  2D10 A;  2FDQ A;  1GC7 A;  3ZDT A;  3U7D A;  2RQ1 A;  1JDE A;  2I1J A;  4JKC A;  4NY0 A;  2WH5 A;  3FLV A;  1DIK A;  2AEH A;  3E9P A;  1VBG A;  3QIJ A;  3AU4 A;  1Y19 B;  1NVL A;  3AU5 A;  1HB6 A;  2X0S A;  4ZRJ A;  2I1K A;  3WA0 A;  1ISN A;  5IJM A;  1H4R A;  4JKG B;  1MIX A;  3SBG A;  3X23 A;  4GXB A;  2J0M A;  3E9O A;  1KBL A;  1SGH A;  1GGO A;  4JKD A;  1GG3 A; 
#chains in the Genus database with same CATH homology
 4HDO A;  4ILJ A;  2HE7 A;  2HRJ A;  2FJ9 A;  4JK8 A;  3PVL A;  4F7G A;  2AL6 A;  4JKH A;  2CQU A;  4JKE A;  1NTI A;  4HDQ A;  4CYE A;  1MIZ B;  2ABD A;  4YL8 A;  1KC7 A;  1GC6 A;  5JVL A;  3IVF A;  1HB8 A;  4JK9 A;  2D11 A;  1EF1 A;  3U8Z A;  4ILH A;  4EKU A;  2COP A;  3BIN A;  3ENB A;  1J19 A;  2ZPY A;  4ZRK A;  4ILG B;  2D2Q A;  3G9W A;  4JKA A;  3FP5 A;  1MK7 B;  4JK7 A;  2YVC A;  3E66 A;  4TKN A;  4P7I A;  2EMS A;  4JKB A;  3SBT A;  1VBH A;  1HBK A;  2J0K A;  1MK9 B;  1ST7 A;  2R82 A;  1ACA A;  3EPY A;  2DIK A;  2CB8 A;  4DXA B;  4ZRI A;  2EMT A;  4JKG A;  3PZD A;  1NI2 A;  2J0J A;  4JKF A;  2LBB A;  3E9L A;  1E5W A;  2D10 A;  2FDQ A;  1GC7 A;  3ZDT A;  3U7D A;  2RQ1 A;  1JDE A;  2I1J A;  4JKC A;  4NY0 A;  2WH5 A;  3FLV A;  1DIK A;  2AEH A;  3E9P A;  1VBG A;  3QIJ A;  3AU4 A;  1Y19 B;  1NVL A;  3AU5 A;  1HB6 A;  2X0S A;  4ZRJ A;  2I1K A;  3WA0 A;  1ISN A;  5IJM A;  1H4R A;  4JKG B;  1MIX A;  3SBG A;  3X23 A;  4GXB A;  2J0M A;  3E9O A;  1KBL A;  1SGH A;  1GGO A;  4JKD A;  1GG3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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