1SU1A

Structural and biochemical characterization of yfce, a phosphoesterase from e. coli
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
184
structure length
184
Chain Sequence
MMKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVAINP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein yfcE
publication title Structural and biochemical characterization of a novel Mn2+-dependent phosphodiesterase encoded by the yfcE gene.
pubmed doi rcsb
source organism Escherichia coli
total genus 53
structure length 184
sequence length 184
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1su1A00
1T70A 3THNA 3QFOA 4MOYA 1TCOA 4V0XA 5JJTA 2BQ8X 3K7WC 4MOVA 3V4YA 1KBPA 4UT3A 4FCXA 3JYFA 2QFPA 3QFKA 2Z06A 5J28A 4TUIA 3EGGA 1M63A 1FJMA 2ZBMA 2QJCA 1U32A 3KBPA 3H67A 5C1VA 1S3NA 4ZVZA 2KKNA 1HO5A 3IVEA 3DSDA 1S70A 1OIDA 4H2BA 4H2FA 4H1SA 4ORAA 1OIEA 4DSYA 3K7VC 3GVEA 3CK2A 5JPFA 2NYLC 1Z2XA 3H66A 4G9JA 2DFJA 4LACC 3H60A 1QFCA 1XZWA 4H2IA 3PSNA 4FBQA 4ZX2A 3QFMA 2WDFA 4LU9A 1S3MA 1UF3A 2USHA 3RL5A 2WDDA 4O24A 5EQVA 1WAO1 1G5BA 2NXFA 2BDXA 3H64A 5JPEA 5GTUA 4O5GA 4XPNA 2QFRA 4Q7FA 4UT3B 3H69A 4YKEA 4F0ZA 2WDCA 4UWQA 1HP1A 1MF8A 4FBKA 4M0VA 3LL8A 4H2GA 4I5LC 1XM7A 2WDEA 3RQZA 4IYPC 4LTYA 4V0WA 2YVTA 4O4KA 3QFNA 1QHWA 4HD0A 5DNYA 4JA9A 3DSCA 1NNWA 2AHDA 3P71C 1UTEA 1IT6A 4H1YP 1HPUA 4ORCA 3DW8C 1S3LA 3ZTVA 5IOHA 1T71A 3RL3A 1JK7A 2HYOA 2NPPC 4J6OA 3TGHA 2BCDA 2R17A 2Z72A 3H63A 3HVQA 4DT2A 3IB8A 2A22A 2HYPA 3EGHA 3THOB 4O43A 1WARA 1OI8A 3C5WC 3T1IA 3PSOA 1S95A 5B8IA 1Z2WA 3N5UA 4MP0A 1AUIA 4DHLA 3IVDA 1SU1A 3H68A 1W24A 2NYMC 2O8AA 4UT2A 4IL1A 4ORBA 3RL4A 4NZVA 5HPEA 5INBA 2XMOA 3FGAC 4KKZA 1USHA 3QG5C 4WWLA 3ZU0A 4I5NC 4V0VA 2O8GA 2GJUA 3IB7A 4TUGA 1V73A 2Q8UA 4OR9A 3E7AA 3AUZA 3H61A 1II7A 4KBPA 2IE3C 4B2OA 2CV9A 2HY1A 3C9FA 4FBWA 5F3WA 2JOGA 2P6BA 4JA7A 2IAEC 2Z1AA 2IE4C 3ICFA 3E7BA 3AV0A 1S8EA 3H62B
chains in the Genus database with same CATH superfamily
1T70A 3THNA 3QFOA 4MOYA 1TCOA 4V0XA 5JJTA 2BQ8X 3K7WC 4MOVA 3V4YA 1KBPA 4UT3A 4FCXA 3JYFA 2QFPA 3QFKA 2Z06A 5J28A 4TUIA 3EGGA 1M63A 1FJMA 2ZBMA 2QJCA 1U32A 3KBPA 3H67A 5C1VA 1S3NA 4ZVZA 2KKNA 1HO5A 3IVEA 3DSDA 1S70A 1OIDA 4H2BA 2ZO9B 4H2FA 4H1SA 4ORAA 1OIEA 4DSYA 3K7VC 3GVEA 3CK2A 3E0JA 5JPFA 2NYLC 1Z2XA 3H66A 4G9JA 2DFJA 4LACC 3H60A 1QFCA 1XZWA 4H2IA 3PSNA 4FBQA 4ZX2A 3QFMA 3D03A 2WDFA 4LU9A 1S3MA 1UF3A 2USHA 3RL5A 2WDDA 4O24A 5EQVA 1WAO1 1G5BA 2NXFA 2BDXA 3H64A 5JPEA 5GTUA 4O5GA 4XPNA 2QFRA 4Q7FA 4UT3B 3H69A 4YKEA 4F0ZA 2WDCA 4UWQA 1HP1A 1MF8A 4FBKA 4M0VA 3LL8A 4H2GA 4I5LC 1XM7A 2WDEA 3RQZA 4IYPC 4LTYA 4V0WA 2YVTA 4O4KA 3QFNA 1QHWA 4HD0A 5DNYA 4JA9A 3DSCA 1NNWA 2AHDA 3P71C 1UTEA 1IT6A 4H1YP 1HPUA 4ORCA 3DW8C 1S3LA 3ZTVA 5IOHA 1T71A 3RL3A 1JK7A 2HYOA 2NPPC 4J6OA 3TGHA 2BCDA 2R17A 2Z72A 3H63A 3HVQA 4DT2A 3IB8A 2A22A 2HYPA 3EGHA 3THOB 4O43A 1WARA 2YEQA 1OI8A 3C5WC 3T1IA 3PSOA 1S95A 2ZOAA 5B8IA 2DXNA 1Z2WA 3FLOA 3N5UA 1AUIA 4MP0A 4DHLA 3IVDA 1SU1A 3H68A 1W24A 2NYMC 2O8AA 4UT2A 4IL1A 4ORBA 3RL4A 4NZVA 5HPEA 5INBA 2XMOA 3FGAC 4KKZA 1USHA 3QG5C 4WWLA 3ZU0A 4I5NC 4V0VA 2O8GA 2GJUA 3IB7A 4TUGA 1V73A 2Q8UA 4OR9A 2DXLA 3E7AA 3AUZA 3H61A 1II7A 4KBPA 2IE3C 4B2OA 2CV9A 2HY1A 3C9FA 4FBWA 5F3WA 2JOGA 2P6BA 4JA7A 2IAEC 2Z1AA 2IE4C 3ICFA 3E7BA 3AV0A 1S8EA 3H62B
chains in the Genus database with same CATH topology
1T70A 3THNA 3QFOA 4MOYA 1TCOA 4V0XA 5JJTA 2BQ8X 3K7WC 4MOVA 3V4YA 1KBPA 4UT3A 4FCXA 3JYFA 2QFPA 3QFKA 2Z06A 5J28A 4TUIA 3EGGA 1M63A 1FJMA 2ZBMA 2QJCA 1U32A 3KBPA 3H67A 5C1VA 1S3NA 4ZVZA 2KKNA 1HO5A 3IVEA 3DSDA 1S70A 1OIDA 4H2BA 2ZO9B 4H2FA 4H1SA 4ORAA 1OIEA 4DSYA 3K7VC 3GVEA 3CK2A 3E0JA 5JPFA 2NYLC 1Z2XA 3H66A 4G9JA 2DFJA 4LACC 3H60A 1QFCA 1XZWA 4H2IA 3PSNA 4FBQA 4ZX2A 3QFMA 3D03A 2WDFA 4LU9A 1S3MA 1UF3A 2USHA 3RL5A 2WDDA 4O24A 5EQVA 1WAO1 1G5BA 2NXFA 2BDXA 3H64A 5JPEA 5GTUA 4O5GA 4XPNA 2QFRA 4Q7FA 4UT3B 3H69A 4YKEA 4F0ZA 2WDCA 4UWQA 1HP1A 1MF8A 4FBKA 4M0VA 3LL8A 4H2GA 4I5LC 1XM7A 2WDEA 3RQZA 4IYPC 4LTYA 4V0WA 2YVTA 4O4KA 3QFNA 1QHWA 4HD0A 5DNYA 4JA9A 3DSCA 1NNWA 2AHDA 3P71C 1UTEA 1IT6A 4H1YP 1HPUA 4ORCA 3DW8C 1S3LA 3ZTVA 5IOHA 1T71A 3RL3A 1JK7A 2HYOA 2NPPC 4J6OA 3TGHA 2BCDA 2R17A 2Z72A 3H63A 3HVQA 4DT2A 3IB8A 2A22A 2HYPA 3EGHA 3THOB 4O43A 1WARA 2YEQA 1OI8A 3C5WC 3T1IA 3PSOA 1S95A 2ZOAA 5B8IA 2DXNA 1Z2WA 3FLOA 3N5UA 1AUIA 4MP0A 4DHLA 3IVDA 1SU1A 3H68A 1W24A 2NYMC 2O8AA 4UT2A 4IL1A 4ORBA 3RL4A 4NZVA 5HPEA 5INBA 2XMOA 3FGAC 4KKZA 1USHA 3QG5C 4WWLA 3ZU0A 4I5NC 4V0VA 2O8GA 2GJUA 3IB7A 4TUGA 1V73A 2Q8UA 4OR9A 2DXLA 3E7AA 3AUZA 3H61A 1II7A 4KBPA 2IE3C 4B2OA 2CV9A 2HY1A 3C9FA 4FBWA 5F3WA 2JOGA 2P6BA 4JA7A 2IAEC 2Z1AA 2IE4C 3ICFA 3E7BA 3AV0A 1S8EA 3H62B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T70 A;  3THN A;  3QFO A;  4MOY A;  1TCO A;  4V0X A;  5JJT A;  2BQ8 X;  3K7W C;  4MOV A;  3V4Y A;  1KBP A;  4UT3 A;  4FCX A;  3JYF A;  2QFP A;  3QFK A;  2Z06 A;  5J28 A;  4TUI A;  3EGG A;  1M63 A;  1FJM A;  2ZBM A;  2QJC A;  1U32 A;  3KBP A;  3H67 A;  5C1V A;  1S3N A;  4ZVZ A;  2KKN A;  1HO5 A;  3IVE A;  3DSD A;  1S70 A;  1OID A;  4H2B A;  4H2F A;  4H1S A;  4ORA A;  1OIE A;  4DSY A;  3K7V C;  3GVE A;  3CK2 A;  5JPF A;  2NYL C;  1Z2X A;  3H66 A;  4G9J A;  2DFJ A;  4LAC C;  3H60 A;  1QFC A;  1XZW A;  4H2I A;  3PSN A;  4FBQ A;  4ZX2 A;  3QFM A;  2WDF A;  4LU9 A;  1S3M A;  1UF3 A;  2USH A;  3RL5 A;  2WDD A;  4O24 A;  5EQV A;  1WAO 1;  1G5B A;  2NXF A;  2BDX A;  3H64 A;  5JPE A;  5GTU A;  4O5G A;  4XPN A;  2QFR A;  4Q7F A;  4UT3 B;  3H69 A;  4YKE A;  4F0Z A;  2WDC A;  4UWQ A;  1HP1 A;  1MF8 A;  4FBK A;  4M0V A;  3LL8 A;  4H2G A;  4I5L C;  1XM7 A;  2WDE A;  3RQZ A;  4IYP C;  4LTY A;  4V0W A;  2YVT A;  4O4K A;  3QFN A;  1QHW A;  4HD0 A;  5DNY A;  4JA9 A;  3DSC A;  1NNW A;  2AHD A;  3P71 C;  1UTE A;  1IT6 A;  4H1Y P;  1HPU A;  4ORC A;  3DW8 C;  1S3L A;  3ZTV A;  5IOH A;  1T71 A;  3RL3 A;  1JK7 A;  2HYO A;  2NPP C;  4J6O A;  3TGH A;  2BCD A;  2R17 A;  2Z72 A;  3H63 A;  3HVQ A;  4DT2 A;  3IB8 A;  2A22 A;  2HYP A;  3EGH A;  3THO B;  4O43 A;  1WAR A;  1OI8 A;  3C5W C;  3T1I A;  3PSO A;  1S95 A;  5B8I A;  1Z2W A;  3N5U A;  4MP0 A;  1AUI A;  4DHL A;  3IVD A;  1SU1 A;  3H68 A;  1W24 A;  2NYM C;  2O8A A;  4UT2 A;  4IL1 A;  4ORB A;  3RL4 A;  4NZV A;  5HPE A;  5INB A;  2XMO A;  3FGA C;  4KKZ A;  1USH A;  3QG5 C;  4WWL A;  3ZU0 A;  4I5N C;  4V0V A;  2O8G A;  2GJU A;  3IB7 A;  4TUG A;  1V73 A;  2Q8U A;  4OR9 A;  3E7A A;  3AUZ A;  3H61 A;  1II7 A;  4KBP A;  2IE3 C;  4B2O A;  2CV9 A;  2HY1 A;  3C9F A;  4FBW A;  5F3W A;  2JOG A;  2P6B A;  4JA7 A;  2IAE C;  2Z1A A;  2IE4 C;  3ICF A;  3E7B A;  3AV0 A;  1S8E A;  3H62 B; 
#chains in the Genus database with same CATH topology
 1T70 A;  3THN A;  3QFO A;  4MOY A;  1TCO A;  4V0X A;  5JJT A;  2BQ8 X;  3K7W C;  4MOV A;  3V4Y A;  1KBP A;  4UT3 A;  4FCX A;  3JYF A;  2QFP A;  3QFK A;  2Z06 A;  5J28 A;  4TUI A;  3EGG A;  1M63 A;  1FJM A;  2ZBM A;  2QJC A;  1U32 A;  3KBP A;  3H67 A;  5C1V A;  1S3N A;  4ZVZ A;  2KKN A;  1HO5 A;  3IVE A;  3DSD A;  1S70 A;  1OID A;  4H2B A;  2ZO9 B;  4H2F A;  4H1S A;  4ORA A;  1OIE A;  4DSY A;  3K7V C;  3GVE A;  3CK2 A;  3E0J A;  5JPF A;  2NYL C;  1Z2X A;  3H66 A;  4G9J A;  2DFJ A;  4LAC C;  3H60 A;  1QFC A;  1XZW A;  4H2I A;  3PSN A;  4FBQ A;  4ZX2 A;  3QFM A;  3D03 A;  2WDF A;  4LU9 A;  1S3M A;  1UF3 A;  2USH A;  3RL5 A;  2WDD A;  4O24 A;  5EQV A;  1WAO 1;  1G5B A;  2NXF A;  2BDX A;  3H64 A;  5JPE A;  5GTU A;  4O5G A;  4XPN A;  2QFR A;  4Q7F A;  4UT3 B;  3H69 A;  4YKE A;  4F0Z A;  2WDC A;  4UWQ A;  1HP1 A;  1MF8 A;  4FBK A;  4M0V A;  3LL8 A;  4H2G A;  4I5L C;  1XM7 A;  2WDE A;  3RQZ A;  4IYP C;  4LTY A;  4V0W A;  2YVT A;  4O4K A;  3QFN A;  1QHW A;  4HD0 A;  5DNY A;  4JA9 A;  3DSC A;  1NNW A;  2AHD A;  3P71 C;  1UTE A;  1IT6 A;  4H1Y P;  1HPU A;  4ORC A;  3DW8 C;  1S3L A;  3ZTV A;  5IOH A;  1T71 A;  3RL3 A;  1JK7 A;  2HYO A;  2NPP C;  4J6O A;  3TGH A;  2BCD A;  2R17 A;  2Z72 A;  3H63 A;  3HVQ A;  4DT2 A;  3IB8 A;  2A22 A;  2HYP A;  3EGH A;  3THO B;  4O43 A;  1WAR A;  2YEQ A;  1OI8 A;  3C5W C;  3T1I A;  3PSO A;  1S95 A;  2ZOA A;  5B8I A;  2DXN A;  1Z2W A;  3FLO A;  3N5U A;  1AUI A;  4MP0 A;  4DHL A;  3IVD A;  1SU1 A;  3H68 A;  1W24 A;  2NYM C;  2O8A A;  4UT2 A;  4IL1 A;  4ORB A;  3RL4 A;  4NZV A;  5HPE A;  5INB A;  2XMO A;  3FGA C;  4KKZ A;  1USH A;  3QG5 C;  4WWL A;  3ZU0 A;  4I5N C;  4V0V A;  2O8G A;  2GJU A;  3IB7 A;  4TUG A;  1V73 A;  2Q8U A;  4OR9 A;  2DXL A;  3E7A A;  3AUZ A;  3H61 A;  1II7 A;  4KBP A;  2IE3 C;  4B2O A;  2CV9 A;  2HY1 A;  3C9F A;  4FBW A;  5F3W A;  2JOG A;  2P6B A;  4JA7 A;  2IAE C;  2Z1A A;  2IE4 C;  3ICF A;  3E7B A;  3AV0 A;  1S8E A;  3H62 B; 
#chains in the Genus database with same CATH homology
 1T70 A;  3THN A;  3QFO A;  4MOY A;  1TCO A;  4V0X A;  5JJT A;  2BQ8 X;  3K7W C;  4MOV A;  3V4Y A;  1KBP A;  4UT3 A;  4FCX A;  3JYF A;  2QFP A;  3QFK A;  2Z06 A;  5J28 A;  4TUI A;  3EGG A;  1M63 A;  1FJM A;  2ZBM A;  2QJC A;  1U32 A;  3KBP A;  3H67 A;  5C1V A;  1S3N A;  4ZVZ A;  2KKN A;  1HO5 A;  3IVE A;  3DSD A;  1S70 A;  1OID A;  4H2B A;  2ZO9 B;  4H2F A;  4H1S A;  4ORA A;  1OIE A;  4DSY A;  3K7V C;  3GVE A;  3CK2 A;  3E0J A;  5JPF A;  2NYL C;  1Z2X A;  3H66 A;  4G9J A;  2DFJ A;  4LAC C;  3H60 A;  1QFC A;  1XZW A;  4H2I A;  3PSN A;  4FBQ A;  4ZX2 A;  3QFM A;  3D03 A;  2WDF A;  4LU9 A;  1S3M A;  1UF3 A;  2USH A;  3RL5 A;  2WDD A;  4O24 A;  5EQV A;  1WAO 1;  1G5B A;  2NXF A;  2BDX A;  3H64 A;  5JPE A;  5GTU A;  4O5G A;  4XPN A;  2QFR A;  4Q7F A;  4UT3 B;  3H69 A;  4YKE A;  4F0Z A;  2WDC A;  4UWQ A;  1HP1 A;  1MF8 A;  4FBK A;  4M0V A;  3LL8 A;  4H2G A;  4I5L C;  1XM7 A;  2WDE A;  3RQZ A;  4IYP C;  4LTY A;  4V0W A;  2YVT A;  4O4K A;  3QFN A;  1QHW A;  4HD0 A;  5DNY A;  4JA9 A;  3DSC A;  1NNW A;  2AHD A;  3P71 C;  1UTE A;  1IT6 A;  4H1Y P;  1HPU A;  4ORC A;  3DW8 C;  1S3L A;  3ZTV A;  5IOH A;  1T71 A;  3RL3 A;  1JK7 A;  2HYO A;  2NPP C;  4J6O A;  3TGH A;  2BCD A;  2R17 A;  2Z72 A;  3H63 A;  3HVQ A;  4DT2 A;  3IB8 A;  2A22 A;  2HYP A;  3EGH A;  3THO B;  4O43 A;  1WAR A;  2YEQ A;  1OI8 A;  3C5W C;  3T1I A;  3PSO A;  1S95 A;  2ZOA A;  5B8I A;  2DXN A;  1Z2W A;  3FLO A;  3N5U A;  1AUI A;  4MP0 A;  4DHL A;  3IVD A;  1SU1 A;  3H68 A;  1W24 A;  2NYM C;  2O8A A;  4UT2 A;  4IL1 A;  4ORB A;  3RL4 A;  4NZV A;  5HPE A;  5INB A;  2XMO A;  3FGA C;  4KKZ A;  1USH A;  3QG5 C;  4WWL A;  3ZU0 A;  4I5N C;  4V0V A;  2O8G A;  2GJU A;  3IB7 A;  4TUG A;  1V73 A;  2Q8U A;  4OR9 A;  2DXL A;  3E7A A;  3AUZ A;  3H61 A;  1II7 A;  4KBP A;  2IE3 C;  4B2O A;  2CV9 A;  2HY1 A;  3C9F A;  4FBW A;  5F3W A;  2JOG A;  2P6B A;  4JA7 A;  2IAE C;  2Z1A A;  2IE4 C;  3ICF A;  3E7B A;  3AV0 A;  1S8E A;  3H62 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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