1SU1A

Structural and biochemical characterization of yfce, a phosphoesterase from e. coli
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
184
structure length
184
Chain Sequence
MMKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVAINP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and biochemical characterization of a novel Mn2+-dependent phosphodiesterase encoded by the yfcE gene.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein yfcE
total genus 53
structure length 184
sequence length 184
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1su1A00
1U32A 2P6BA 3DSCA 1Z2WA 1HO5A 2O8GA 4H2FA 5IOHA 3QFMA 1XZWA 1AUIA 3PSNA 4H1SA 3H69A 4ORAA 4DHLA 1V73A 1HP1A 4IYPC 2NYLC 4M0VA 2Z06A 3H63A 2WDEA 1UF3A 2USHA 3C9FA 3K7VC 3EGHA 2NYMC 3CK2A 4LU9A 4UT3A 3C5WC 4G9JA 3QG5C 4HD0A 4LACC 3RL4A 3DW8C 4ORCA 3JYFA 3IVDA 1XM7A 2AHDA 3PSOA 1JK7A 1TCOA 3E7AA 4JA9A 3ZU0A 4H2IA 1S8EA 2QJCA 4H2GA 3H68A 2IE4C 3H60A 1G5BA 4MOVA 4JA7A 4I5NC 1Z2XA 5GTUA 3THOB 1W24A 2DFJA 2IAEC 5EQVA 2WDDA 4MOYA 5DNYA 4H1YP 2YVTA 4UT3B 1T70A 1QFCA 4DT2A 4KBPA 1S95A 2O8AA 4OR9A 2NXFA 2HYPA 3ICFA 2GJUA 4O43A 3E7BA 4FBWA 4WWLA 1USHA 3IB7A 3DSDA 4FBKA 1WARA 3H61A 2Z72A 5F3WA 1M63A 4ZVZA 4V0VA 1FJMA 3V4YA 5C1VA 3THNA 2JOGA 4UT2A 3RL3A 4DSYA 4J6OA 3KBPA 4ZX2A 2ZBMA 3LL8A 3P71C 1QHWA 4NZVA 5J28A 3TGHA 3H67A 2A22A 4KKZA 1S3LA 1KBPA 3QFKA 5JJTA 4O4KA 3IVEA 2R17A 3H66A 4FCXA 4MP0A 1WAO1 2XMOA 4LTYA 1UTEA 3RQZA 2BCDA 1HPUA 2NPPC 3K7WC 3RL5A 2QFPA 1S3NA 4B2OA 5INBA 2BQ8X 4Q7FA 5HPEA 3H64A 3ZTVA 1T71A 1IT6A 1II7A 3FGAC 1OI8A 2WDFA 4IL1A 4V0WA 2KKNA 3H62B 3HVQA 2IE3C 4O5GA 3GVEA 1S3MA 3IB8A 2Q8UA 4I5LC 5JPFA 2HYOA 3EGGA 4O24A 4YKEA 2BDXA 4TUGA 2QFRA 1SU1A 4TUIA 1S70A 5B8IA 4F0ZA 1OIEA 2CV9A 3QFNA 2WDCA 3QFOA 4FBQA 3N5UA 4H2BA 4V0XA 4XPNA 5JPEA 1NNWA 2Z1AA 4UWQA 3AV0A 4ORBA 3AUZA 3T1IA 2HY1A 1MF8A 1OIDA
chains in the Genus database with same CATH superfamily
1U32A 2P6BA 3DSCA 1Z2WA 1HO5A 2O8GA 4H2FA 5IOHA 3QFMA 1XZWA 1AUIA 3PSNA 4H1SA 3H69A 4ORAA 4DHLA 1V73A 1HP1A 4IYPC 2NYLC 4M0VA 2Z06A 3H63A 2WDEA 1UF3A 2USHA 3C9FA 3K7VC 3EGHA 2NYMC 3CK2A 4LU9A 4UT3A 3C5WC 4G9JA 3QG5C 4HD0A 4LACC 3RL4A 3DW8C 4ORCA 3JYFA 3IVDA 1XM7A 2AHDA 3PSOA 1JK7A 1TCOA 3E7AA 4JA9A 3ZU0A 4H2IA 1S8EA 2QJCA 4H2GA 3H68A 2IE4C 3H60A 1G5BA 4MOVA 4JA7A 4I5NC 1Z2XA 5GTUA 3THOB 1W24A 2DFJA 2IAEC 5EQVA 2WDDA 2YEQA 4MOYA 5DNYA 4H1YP 2YVTA 4UT3B 1T70A 1QFCA 4DT2A 4KBPA 1S95A 2O8AA 4OR9A 2NXFA 2HYPA 3ICFA 2GJUA 4O43A 3E7BA 4FBWA 4WWLA 1USHA 3IB7A 3DSDA 4FBKA 1WARA 3H61A 2Z72A 5F3WA 1M63A 4ZVZA 4V0VA 1FJMA 3V4YA 5C1VA 3THNA 2JOGA 4UT2A 3RL3A 4DSYA 4J6OA 3KBPA 4ZX2A 2ZBMA 3LL8A 3P71C 1QHWA 4NZVA 5J28A 3TGHA 3H67A 2A22A 4KKZA 1S3LA 1KBPA 3QFKA 5JJTA 4O4KA 3IVEA 2R17A 3H66A 4FCXA 4MP0A 1WAO1 2XMOA 4LTYA 1UTEA 3RQZA 2BCDA 1HPUA 2NPPC 3K7WC 2DXNA 3RL5A 2QFPA 1S3NA 4B2OA 5INBA 2BQ8X 3D03A 4Q7FA 2ZO9B 5HPEA 3H64A 3ZTVA 1T71A 1IT6A 1II7A 3FGAC 1OI8A 2DXLA 2WDFA 4IL1A 4V0WA 2KKNA 3H62B 3HVQA 2IE3C 4O5GA 3GVEA 3E0JA 1S3MA 3IB8A 2Q8UA 4I5LC 5JPFA 2HYOA 3EGGA 4O24A 4YKEA 3FLOA 2ZOAA 2BDXA 4TUGA 2QFRA 1SU1A 4TUIA 1S70A 5B8IA 4F0ZA 1OIEA 2CV9A 3QFNA 2WDCA 3QFOA 4FBQA 3N5UA 4H2BA 4V0XA 4XPNA 5JPEA 1NNWA 2Z1AA 4UWQA 3AV0A 4ORBA 3AUZA 3T1IA 2HY1A 1MF8A 1OIDA
chains in the Genus database with same CATH topology
1U32A 2P6BA 3DSCA 1Z2WA 1HO5A 2O8GA 4H2FA 5IOHA 3QFMA 1XZWA 1AUIA 3PSNA 4H1SA 3H69A 4ORAA 4DHLA 1V73A 1HP1A 4IYPC 2NYLC 4M0VA 2Z06A 3H63A 2WDEA 1UF3A 2USHA 3C9FA 3K7VC 3EGHA 2NYMC 3CK2A 4LU9A 4UT3A 3C5WC 4G9JA 3QG5C 4HD0A 4LACC 3RL4A 3DW8C 4ORCA 3JYFA 3IVDA 1XM7A 2AHDA 3PSOA 1JK7A 1TCOA 3E7AA 4JA9A 3ZU0A 4H2IA 1S8EA 2QJCA 4H2GA 3H68A 2IE4C 3H60A 1G5BA 4MOVA 4JA7A 4I5NC 1Z2XA 5GTUA 3THOB 1W24A 2DFJA 2IAEC 5EQVA 2WDDA 2YEQA 4MOYA 5DNYA 4H1YP 2YVTA 4UT3B 1T70A 1QFCA 4DT2A 4KBPA 1S95A 2O8AA 4OR9A 2NXFA 2HYPA 3ICFA 2GJUA 4O43A 3E7BA 4FBWA 4WWLA 1USHA 3IB7A 3DSDA 4FBKA 1WARA 3H61A 2Z72A 5F3WA 1M63A 4ZVZA 4V0VA 1FJMA 3V4YA 5C1VA 3THNA 2JOGA 4UT2A 3RL3A 4DSYA 4J6OA 3KBPA 4ZX2A 2ZBMA 3LL8A 3P71C 1QHWA 4NZVA 5J28A 3TGHA 3H67A 2A22A 4KKZA 1S3LA 1KBPA 3QFKA 5JJTA 4O4KA 3IVEA 2R17A 3H66A 4FCXA 4MP0A 1WAO1 2XMOA 4LTYA 1UTEA 3RQZA 2BCDA 1HPUA 2NPPC 3K7WC 2DXNA 3RL5A 2QFPA 1S3NA 4B2OA 5INBA 2BQ8X 3D03A 4Q7FA 2ZO9B 5HPEA 3H64A 3ZTVA 1T71A 1IT6A 1II7A 3FGAC 1OI8A 2DXLA 2WDFA 4IL1A 4V0WA 2KKNA 3H62B 3HVQA 2IE3C 4O5GA 3GVEA 3E0JA 1S3MA 3IB8A 2Q8UA 4I5LC 5JPFA 2HYOA 3EGGA 4O24A 4YKEA 3FLOA 2ZOAA 2BDXA 4TUGA 2QFRA 1SU1A 4TUIA 1S70A 5B8IA 4F0ZA 1OIEA 2CV9A 3QFNA 2WDCA 3QFOA 4FBQA 3N5UA 4H2BA 4V0XA 4XPNA 5JPEA 1NNWA 2Z1AA 4UWQA 3AV0A 4ORBA 3AUZA 3T1IA 2HY1A 1MF8A 1OIDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U32 A;  2P6B A;  3DSC A;  1Z2W A;  1HO5 A;  2O8G A;  4H2F A;  5IOH A;  3QFM A;  1XZW A;  1AUI A;  3PSN A;  4H1S A;  3H69 A;  4ORA A;  4DHL A;  1V73 A;  1HP1 A;  4IYP C;  2NYL C;  4M0V A;  2Z06 A;  3H63 A;  2WDE A;  1UF3 A;  2USH A;  3C9F A;  3K7V C;  3EGH A;  2NYM C;  3CK2 A;  4LU9 A;  4UT3 A;  3C5W C;  4G9J A;  3QG5 C;  4HD0 A;  4LAC C;  3RL4 A;  3DW8 C;  4ORC A;  3JYF A;  3IVD A;  1XM7 A;  2AHD A;  3PSO A;  1JK7 A;  1TCO A;  3E7A A;  4JA9 A;  3ZU0 A;  4H2I A;  1S8E A;  2QJC A;  4H2G A;  3H68 A;  2IE4 C;  3H60 A;  1G5B A;  4MOV A;  4JA7 A;  4I5N C;  1Z2X A;  5GTU A;  3THO B;  1W24 A;  2DFJ A;  2IAE C;  5EQV A;  2WDD A;  4MOY A;  5DNY A;  4H1Y P;  2YVT A;  4UT3 B;  1T70 A;  1QFC A;  4DT2 A;  4KBP A;  1S95 A;  2O8A A;  4OR9 A;  2NXF A;  2HYP A;  3ICF A;  2GJU A;  4O43 A;  3E7B A;  4FBW A;  4WWL A;  1USH A;  3IB7 A;  3DSD A;  4FBK A;  1WAR A;  3H61 A;  2Z72 A;  5F3W A;  1M63 A;  4ZVZ A;  4V0V A;  1FJM A;  3V4Y A;  5C1V A;  3THN A;  2JOG A;  4UT2 A;  3RL3 A;  4DSY A;  4J6O A;  3KBP A;  4ZX2 A;  2ZBM A;  3LL8 A;  3P71 C;  1QHW A;  4NZV A;  5J28 A;  3TGH A;  3H67 A;  2A22 A;  4KKZ A;  1S3L A;  1KBP A;  3QFK A;  5JJT A;  4O4K A;  3IVE A;  2R17 A;  3H66 A;  4FCX A;  4MP0 A;  1WAO 1;  2XMO A;  4LTY A;  1UTE A;  3RQZ A;  2BCD A;  1HPU A;  2NPP C;  3K7W C;  3RL5 A;  2QFP A;  1S3N A;  4B2O A;  5INB A;  2BQ8 X;  4Q7F A;  5HPE A;  3H64 A;  3ZTV A;  1T71 A;  1IT6 A;  1II7 A;  3FGA C;  1OI8 A;  2WDF A;  4IL1 A;  4V0W A;  2KKN A;  3H62 B;  3HVQ A;  2IE3 C;  4O5G A;  3GVE A;  1S3M A;  3IB8 A;  2Q8U A;  4I5L C;  5JPF A;  2HYO A;  3EGG A;  4O24 A;  4YKE A;  2BDX A;  4TUG A;  2QFR A;  1SU1 A;  4TUI A;  1S70 A;  5B8I A;  4F0Z A;  1OIE A;  2CV9 A;  3QFN A;  2WDC A;  3QFO A;  4FBQ A;  3N5U A;  4H2B A;  4V0X A;  4XPN A;  5JPE A;  1NNW A;  2Z1A A;  4UWQ A;  3AV0 A;  4ORB A;  3AUZ A;  3T1I A;  2HY1 A;  1MF8 A;  1OID A; 
#chains in the Genus database with same CATH topology
 1U32 A;  2P6B A;  3DSC A;  1Z2W A;  1HO5 A;  2O8G A;  4H2F A;  5IOH A;  3QFM A;  1XZW A;  1AUI A;  3PSN A;  4H1S A;  3H69 A;  4ORA A;  4DHL A;  1V73 A;  1HP1 A;  4IYP C;  2NYL C;  4M0V A;  2Z06 A;  3H63 A;  2WDE A;  1UF3 A;  2USH A;  3C9F A;  3K7V C;  3EGH A;  2NYM C;  3CK2 A;  4LU9 A;  4UT3 A;  3C5W C;  4G9J A;  3QG5 C;  4HD0 A;  4LAC C;  3RL4 A;  3DW8 C;  4ORC A;  3JYF A;  3IVD A;  1XM7 A;  2AHD A;  3PSO A;  1JK7 A;  1TCO A;  3E7A A;  4JA9 A;  3ZU0 A;  4H2I A;  1S8E A;  2QJC A;  4H2G A;  3H68 A;  2IE4 C;  3H60 A;  1G5B A;  4MOV A;  4JA7 A;  4I5N C;  1Z2X A;  5GTU A;  3THO B;  1W24 A;  2DFJ A;  2IAE C;  5EQV A;  2WDD A;  2YEQ A;  4MOY A;  5DNY A;  4H1Y P;  2YVT A;  4UT3 B;  1T70 A;  1QFC A;  4DT2 A;  4KBP A;  1S95 A;  2O8A A;  4OR9 A;  2NXF A;  2HYP A;  3ICF A;  2GJU A;  4O43 A;  3E7B A;  4FBW A;  4WWL A;  1USH A;  3IB7 A;  3DSD A;  4FBK A;  1WAR A;  3H61 A;  2Z72 A;  5F3W A;  1M63 A;  4ZVZ A;  4V0V A;  1FJM A;  3V4Y A;  5C1V A;  3THN A;  2JOG A;  4UT2 A;  3RL3 A;  4DSY A;  4J6O A;  3KBP A;  4ZX2 A;  2ZBM A;  3LL8 A;  3P71 C;  1QHW A;  4NZV A;  5J28 A;  3TGH A;  3H67 A;  2A22 A;  4KKZ A;  1S3L A;  1KBP A;  3QFK A;  5JJT A;  4O4K A;  3IVE A;  2R17 A;  3H66 A;  4FCX A;  4MP0 A;  1WAO 1;  2XMO A;  4LTY A;  1UTE A;  3RQZ A;  2BCD A;  1HPU A;  2NPP C;  3K7W C;  2DXN A;  3RL5 A;  2QFP A;  1S3N A;  4B2O A;  5INB A;  2BQ8 X;  3D03 A;  4Q7F A;  2ZO9 B;  5HPE A;  3H64 A;  3ZTV A;  1T71 A;  1IT6 A;  1II7 A;  3FGA C;  1OI8 A;  2DXL A;  2WDF A;  4IL1 A;  4V0W A;  2KKN A;  3H62 B;  3HVQ A;  2IE3 C;  4O5G A;  3GVE A;  3E0J A;  1S3M A;  3IB8 A;  2Q8U A;  4I5L C;  5JPF A;  2HYO A;  3EGG A;  4O24 A;  4YKE A;  3FLO A;  2ZOA A;  2BDX A;  4TUG A;  2QFR A;  1SU1 A;  4TUI A;  1S70 A;  5B8I A;  4F0Z A;  1OIE A;  2CV9 A;  3QFN A;  2WDC A;  3QFO A;  4FBQ A;  3N5U A;  4H2B A;  4V0X A;  4XPN A;  5JPE A;  1NNW A;  2Z1A A;  4UWQ A;  3AV0 A;  4ORB A;  3AUZ A;  3T1I A;  2HY1 A;  1MF8 A;  1OID A; 
#chains in the Genus database with same CATH homology
 1U32 A;  2P6B A;  3DSC A;  1Z2W A;  1HO5 A;  2O8G A;  4H2F A;  5IOH A;  3QFM A;  1XZW A;  1AUI A;  3PSN A;  4H1S A;  3H69 A;  4ORA A;  4DHL A;  1V73 A;  1HP1 A;  4IYP C;  2NYL C;  4M0V A;  2Z06 A;  3H63 A;  2WDE A;  1UF3 A;  2USH A;  3C9F A;  3K7V C;  3EGH A;  2NYM C;  3CK2 A;  4LU9 A;  4UT3 A;  3C5W C;  4G9J A;  3QG5 C;  4HD0 A;  4LAC C;  3RL4 A;  3DW8 C;  4ORC A;  3JYF A;  3IVD A;  1XM7 A;  2AHD A;  3PSO A;  1JK7 A;  1TCO A;  3E7A A;  4JA9 A;  3ZU0 A;  4H2I A;  1S8E A;  2QJC A;  4H2G A;  3H68 A;  2IE4 C;  3H60 A;  1G5B A;  4MOV A;  4JA7 A;  4I5N C;  1Z2X A;  5GTU A;  3THO B;  1W24 A;  2DFJ A;  2IAE C;  5EQV A;  2WDD A;  2YEQ A;  4MOY A;  5DNY A;  4H1Y P;  2YVT A;  4UT3 B;  1T70 A;  1QFC A;  4DT2 A;  4KBP A;  1S95 A;  2O8A A;  4OR9 A;  2NXF A;  2HYP A;  3ICF A;  2GJU A;  4O43 A;  3E7B A;  4FBW A;  4WWL A;  1USH A;  3IB7 A;  3DSD A;  4FBK A;  1WAR A;  3H61 A;  2Z72 A;  5F3W A;  1M63 A;  4ZVZ A;  4V0V A;  1FJM A;  3V4Y A;  5C1V A;  3THN A;  2JOG A;  4UT2 A;  3RL3 A;  4DSY A;  4J6O A;  3KBP A;  4ZX2 A;  2ZBM A;  3LL8 A;  3P71 C;  1QHW A;  4NZV A;  5J28 A;  3TGH A;  3H67 A;  2A22 A;  4KKZ A;  1S3L A;  1KBP A;  3QFK A;  5JJT A;  4O4K A;  3IVE A;  2R17 A;  3H66 A;  4FCX A;  4MP0 A;  1WAO 1;  2XMO A;  4LTY A;  1UTE A;  3RQZ A;  2BCD A;  1HPU A;  2NPP C;  3K7W C;  2DXN A;  3RL5 A;  2QFP A;  1S3N A;  4B2O A;  5INB A;  2BQ8 X;  3D03 A;  4Q7F A;  2ZO9 B;  5HPE A;  3H64 A;  3ZTV A;  1T71 A;  1IT6 A;  1II7 A;  3FGA C;  1OI8 A;  2DXL A;  2WDF A;  4IL1 A;  4V0W A;  2KKN A;  3H62 B;  3HVQ A;  2IE3 C;  4O5G A;  3GVE A;  3E0J A;  1S3M A;  3IB8 A;  2Q8U A;  4I5L C;  5JPF A;  2HYO A;  3EGG A;  4O24 A;  4YKE A;  3FLO A;  2ZOA A;  2BDX A;  4TUG A;  2QFR A;  1SU1 A;  4TUI A;  1S70 A;  5B8I A;  4F0Z A;  1OIE A;  2CV9 A;  3QFN A;  2WDC A;  3QFO A;  4FBQ A;  3N5U A;  4H2B A;  4V0X A;  4XPN A;  5JPE A;  1NNW A;  2Z1A A;  4UWQ A;  3AV0 A;  4ORB A;  3AUZ A;  3T1I A;  2HY1 A;  1MF8 A;  1OID A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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