1SU1A

Structural and biochemical characterization of yfce, a phosphoesterase from e. coli
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
184
structure length
184
Chain Sequence
MMKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLDNDVLSVIALNDQSIIAQVAINP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and biochemical characterization of a novel Mn2+-dependent phosphodiesterase encoded by the yfcE gene.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein yfcE
total genus 53
structure length 184
sequence length 184
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1su1A00
4ORAA 1FJMA 1SU1A 2HYOA 2QFPA 4Q7FA 2IE3C 3DSCA 1S3NA 1IT6A 2ZBMA 3T1IA 4DHLA 4XPNA 1Z2XA 3QG5C 5JPFA 3EGHA 3QFOA 2WDEA 4H1YP 1USHA 1S8EA 1XM7A 3V4YA 2NXFA 1V73A 2A22A 4JA7A 3ZTVA 2NYLC 1AUIA 2JOGA 1XZWA 3THNA 3LL8A 4UT3B 4ZVZA 3JYFA 1U32A 1JK7A 1T70A 3ICFA 1NNWA 4MOVA 1G5BA 2WDFA 4HD0A 3IVDA 3RL3A 3E7BA 1HPUA 2NPPC 4G9JA 2R17A 2IE4C 3AUZA 1OIEA 4I5LC 3RL5A 3PSOA 4UT2A 3QFNA 3H68A 1UTEA 1Z2WA 3H63A 1WAO1 1W24A 1HP1A 4ORBA 2Z72A 3FGAC 4FBQA 1S3LA 4TUIA 4LACC 1HO5A 2HYPA 3TGHA 4MP0A 4WWLA 4IYPC 4J6OA 4FBWA 3IB7A 2YVTA 4V0WA 3THOB 1OIDA 1II7A 4B2OA 5DNYA 3K7WC 1T71A 4FBKA 3H67A 4M0VA 4MOYA 5B8IA 2QJCA 2WDCA 4ZX2A 2WDDA 3CK2A 2DFJA 4FCXA 1S70A 3H62B 4DSYA 3E7AA 4TUGA 2QFRA 4OR9A 4KKZA 3H61A 2O8GA 2NYMC 3K7VC 3RQZA 1UF3A 4H2FA 2USHA 3QFMA 3H69A 2XMOA 2KKNA 1MF8A 3KBPA 4H2BA 5C1VA 4JA9A 3QFKA 4O43A 3HVQA 4UWQA 2P6BA 1WARA 5JPEA 3N5UA 5JJTA 2BCDA 5F3WA 4F0ZA 2BQ8X 2GJUA 4YKEA 2Q8UA 2CV9A 2HY1A 1M63A 5IOHA 2O8AA 4H2IA 3P71C 1TCOA 1QHWA 3GVEA 5GTUA 1S95A 1OI8A 2AHDA 1KBPA 3RL4A 4DT2A 4NZVA 2Z1AA 4ORCA 4UT3A 4H1SA 3DW8C 3PSNA 5EQVA 4V0XA 3ZU0A 2BDXA 4I5NC 4LU9A 4O24A 3C9FA 4H2GA 3IB8A 3H60A 4LTYA 1S3MA 4IL1A 1QFCA 3AV0A 4O5GA 4O4KA 3IVEA 3C5WC 5HPEA 5INBA 5J28A 3DSDA 2IAEC 4KBPA 3H64A 3EGGA 4V0VA 3H66A 2Z06A
chains in the Genus database with same CATH superfamily
4ORAA 1FJMA 1SU1A 2HYOA 2QFPA 4Q7FA 2IE3C 3DSCA 1S3NA 1IT6A 2ZBMA 3T1IA 4DHLA 4XPNA 1Z2XA 3QG5C 5JPFA 3EGHA 3QFOA 2WDEA 4H1YP 1USHA 1S8EA 1XM7A 3V4YA 2NXFA 1V73A 2A22A 4JA7A 3ZTVA 2NYLC 1AUIA 2JOGA 1XZWA 3THNA 3LL8A 4UT3B 4ZVZA 3JYFA 1U32A 1JK7A 1T70A 2ZO9B 1NNWA 3ICFA 4MOVA 1G5BA 2WDFA 4HD0A 3IVDA 3RL3A 3E7BA 1HPUA 2NPPC 4G9JA 3D03A 2R17A 2IE4C 3AUZA 1OIEA 4I5LC 3RL5A 3PSOA 4UT2A 3QFNA 3H68A 1UTEA 1Z2WA 3H63A 1WAO1 1W24A 1HP1A 4ORBA 2Z72A 3FGAC 4FBQA 1S3LA 4TUIA 4LACC 1HO5A 2HYPA 3TGHA 4MP0A 4WWLA 4IYPC 4J6OA 4FBWA 3IB7A 2YVTA 4V0WA 3THOB 1OIDA 1II7A 4B2OA 5DNYA 3K7WC 1T71A 4FBKA 3H67A 4M0VA 4MOYA 5B8IA 3E0JA 2QJCA 2WDCA 4ZX2A 2WDDA 3CK2A 2DFJA 4FCXA 1S70A 3H62B 4DSYA 3E7AA 4TUGA 2QFRA 4OR9A 4KKZA 3H61A 2O8GA 2NYMC 3K7VC 3RQZA 1UF3A 4H2FA 2USHA 3QFMA 3H69A 2XMOA 2KKNA 1MF8A 3KBPA 4H2BA 5C1VA 2YEQA 4JA9A 3QFKA 4O43A 3HVQA 4UWQA 2P6BA 1WARA 5JPEA 3N5UA 5JJTA 2DXLA 2BCDA 5F3WA 4F0ZA 2BQ8X 2GJUA 4YKEA 2Q8UA 2CV9A 2HY1A 1M63A 5IOHA 2O8AA 4H2IA 3P71C 1TCOA 1QHWA 3GVEA 5GTUA 1S95A 1OI8A 2AHDA 1KBPA 2DXNA 3RL4A 4DT2A 4NZVA 2Z1AA 4ORCA 4UT3A 4H1SA 3DW8C 3PSNA 5EQVA 2ZOAA 4V0XA 3ZU0A 2BDXA 3FLOA 4I5NC 4LU9A 4O24A 3C9FA 4H2GA 3IB8A 3H60A 4LTYA 1S3MA 4IL1A 1QFCA 3AV0A 4O5GA 4O4KA 3IVEA 3C5WC 5HPEA 5INBA 5J28A 3DSDA 2IAEC 4KBPA 3H64A 3EGGA 4V0VA 3H66A 2Z06A
chains in the Genus database with same CATH topology
4ORAA 1FJMA 1SU1A 2HYOA 2QFPA 4Q7FA 2IE3C 3DSCA 1S3NA 1IT6A 2ZBMA 3T1IA 4DHLA 4XPNA 1Z2XA 3QG5C 5JPFA 3EGHA 3QFOA 2WDEA 4H1YP 1USHA 1S8EA 1XM7A 3V4YA 2NXFA 1V73A 2A22A 4JA7A 3ZTVA 2NYLC 1AUIA 2JOGA 1XZWA 3THNA 3LL8A 4UT3B 4ZVZA 3JYFA 1U32A 1JK7A 1T70A 2ZO9B 1NNWA 3ICFA 4MOVA 1G5BA 2WDFA 4HD0A 3IVDA 3RL3A 3E7BA 1HPUA 2NPPC 4G9JA 3D03A 2R17A 2IE4C 3AUZA 1OIEA 4I5LC 3RL5A 3PSOA 4UT2A 3QFNA 3H68A 1UTEA 1Z2WA 3H63A 1WAO1 1W24A 1HP1A 4ORBA 2Z72A 3FGAC 4FBQA 1S3LA 4TUIA 4LACC 1HO5A 2HYPA 3TGHA 4MP0A 4WWLA 4IYPC 4J6OA 4FBWA 3IB7A 2YVTA 4V0WA 3THOB 1OIDA 1II7A 4B2OA 5DNYA 3K7WC 1T71A 4FBKA 3H67A 4M0VA 4MOYA 5B8IA 3E0JA 2QJCA 2WDCA 4ZX2A 2WDDA 3CK2A 2DFJA 4FCXA 1S70A 3H62B 4DSYA 3E7AA 4TUGA 2QFRA 4OR9A 4KKZA 3H61A 2O8GA 2NYMC 3K7VC 3RQZA 1UF3A 4H2FA 2USHA 3QFMA 3H69A 2XMOA 2KKNA 1MF8A 3KBPA 4H2BA 5C1VA 2YEQA 4JA9A 3QFKA 4O43A 3HVQA 4UWQA 2P6BA 1WARA 5JPEA 3N5UA 5JJTA 2DXLA 2BCDA 5F3WA 4F0ZA 2BQ8X 2GJUA 4YKEA 2Q8UA 2CV9A 2HY1A 1M63A 5IOHA 2O8AA 4H2IA 3P71C 1TCOA 1QHWA 3GVEA 5GTUA 1S95A 1OI8A 2AHDA 1KBPA 2DXNA 3RL4A 4DT2A 4NZVA 2Z1AA 4ORCA 4UT3A 4H1SA 3DW8C 3PSNA 5EQVA 2ZOAA 4V0XA 3ZU0A 2BDXA 3FLOA 4I5NC 4LU9A 4O24A 3C9FA 4H2GA 3IB8A 3H60A 4LTYA 1S3MA 4IL1A 1QFCA 3AV0A 4O5GA 4O4KA 3IVEA 3C5WC 5HPEA 5INBA 5J28A 3DSDA 2IAEC 4KBPA 3H64A 3EGGA 4V0VA 3H66A 2Z06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ORA A;  1FJM A;  1SU1 A;  2HYO A;  2QFP A;  4Q7F A;  2IE3 C;  3DSC A;  1S3N A;  1IT6 A;  2ZBM A;  3T1I A;  4DHL A;  4XPN A;  1Z2X A;  3QG5 C;  5JPF A;  3EGH A;  3QFO A;  2WDE A;  4H1Y P;  1USH A;  1S8E A;  1XM7 A;  3V4Y A;  2NXF A;  1V73 A;  2A22 A;  4JA7 A;  3ZTV A;  2NYL C;  1AUI A;  2JOG A;  1XZW A;  3THN A;  3LL8 A;  4UT3 B;  4ZVZ A;  3JYF A;  1U32 A;  1JK7 A;  1T70 A;  3ICF A;  1NNW A;  4MOV A;  1G5B A;  2WDF A;  4HD0 A;  3IVD A;  3RL3 A;  3E7B A;  1HPU A;  2NPP C;  4G9J A;  2R17 A;  2IE4 C;  3AUZ A;  1OIE A;  4I5L C;  3RL5 A;  3PSO A;  4UT2 A;  3QFN A;  3H68 A;  1UTE A;  1Z2W A;  3H63 A;  1WAO 1;  1W24 A;  1HP1 A;  4ORB A;  2Z72 A;  3FGA C;  4FBQ A;  1S3L A;  4TUI A;  4LAC C;  1HO5 A;  2HYP A;  3TGH A;  4MP0 A;  4WWL A;  4IYP C;  4J6O A;  4FBW A;  3IB7 A;  2YVT A;  4V0W A;  3THO B;  1OID A;  1II7 A;  4B2O A;  5DNY A;  3K7W C;  1T71 A;  4FBK A;  3H67 A;  4M0V A;  4MOY A;  5B8I A;  2QJC A;  2WDC A;  4ZX2 A;  2WDD A;  3CK2 A;  2DFJ A;  4FCX A;  1S70 A;  3H62 B;  4DSY A;  3E7A A;  4TUG A;  2QFR A;  4OR9 A;  4KKZ A;  3H61 A;  2O8G A;  2NYM C;  3K7V C;  3RQZ A;  1UF3 A;  4H2F A;  2USH A;  3QFM A;  3H69 A;  2XMO A;  2KKN A;  1MF8 A;  3KBP A;  4H2B A;  5C1V A;  4JA9 A;  3QFK A;  4O43 A;  3HVQ A;  4UWQ A;  2P6B A;  1WAR A;  5JPE A;  3N5U A;  5JJT A;  2BCD A;  5F3W A;  4F0Z A;  2BQ8 X;  2GJU A;  4YKE A;  2Q8U A;  2CV9 A;  2HY1 A;  1M63 A;  5IOH A;  2O8A A;  4H2I A;  3P71 C;  1TCO A;  1QHW A;  3GVE A;  5GTU A;  1S95 A;  1OI8 A;  2AHD A;  1KBP A;  3RL4 A;  4DT2 A;  4NZV A;  2Z1A A;  4ORC A;  4UT3 A;  4H1S A;  3DW8 C;  3PSN A;  5EQV A;  4V0X A;  3ZU0 A;  2BDX A;  4I5N C;  4LU9 A;  4O24 A;  3C9F A;  4H2G A;  3IB8 A;  3H60 A;  4LTY A;  1S3M A;  4IL1 A;  1QFC A;  3AV0 A;  4O5G A;  4O4K A;  3IVE A;  3C5W C;  5HPE A;  5INB A;  5J28 A;  3DSD A;  2IAE C;  4KBP A;  3H64 A;  3EGG A;  4V0V A;  3H66 A;  2Z06 A; 
#chains in the Genus database with same CATH topology
 4ORA A;  1FJM A;  1SU1 A;  2HYO A;  2QFP A;  4Q7F A;  2IE3 C;  3DSC A;  1S3N A;  1IT6 A;  2ZBM A;  3T1I A;  4DHL A;  4XPN A;  1Z2X A;  3QG5 C;  5JPF A;  3EGH A;  3QFO A;  2WDE A;  4H1Y P;  1USH A;  1S8E A;  1XM7 A;  3V4Y A;  2NXF A;  1V73 A;  2A22 A;  4JA7 A;  3ZTV A;  2NYL C;  1AUI A;  2JOG A;  1XZW A;  3THN A;  3LL8 A;  4UT3 B;  4ZVZ A;  3JYF A;  1U32 A;  1JK7 A;  1T70 A;  2ZO9 B;  1NNW A;  3ICF A;  4MOV A;  1G5B A;  2WDF A;  4HD0 A;  3IVD A;  3RL3 A;  3E7B A;  1HPU A;  2NPP C;  4G9J A;  3D03 A;  2R17 A;  2IE4 C;  3AUZ A;  1OIE A;  4I5L C;  3RL5 A;  3PSO A;  4UT2 A;  3QFN A;  3H68 A;  1UTE A;  1Z2W A;  3H63 A;  1WAO 1;  1W24 A;  1HP1 A;  4ORB A;  2Z72 A;  3FGA C;  4FBQ A;  1S3L A;  4TUI A;  4LAC C;  1HO5 A;  2HYP A;  3TGH A;  4MP0 A;  4WWL A;  4IYP C;  4J6O A;  4FBW A;  3IB7 A;  2YVT A;  4V0W A;  3THO B;  1OID A;  1II7 A;  4B2O A;  5DNY A;  3K7W C;  1T71 A;  4FBK A;  3H67 A;  4M0V A;  4MOY A;  5B8I A;  3E0J A;  2QJC A;  2WDC A;  4ZX2 A;  2WDD A;  3CK2 A;  2DFJ A;  4FCX A;  1S70 A;  3H62 B;  4DSY A;  3E7A A;  4TUG A;  2QFR A;  4OR9 A;  4KKZ A;  3H61 A;  2O8G A;  2NYM C;  3K7V C;  3RQZ A;  1UF3 A;  4H2F A;  2USH A;  3QFM A;  3H69 A;  2XMO A;  2KKN A;  1MF8 A;  3KBP A;  4H2B A;  5C1V A;  2YEQ A;  4JA9 A;  3QFK A;  4O43 A;  3HVQ A;  4UWQ A;  2P6B A;  1WAR A;  5JPE A;  3N5U A;  5JJT A;  2DXL A;  2BCD A;  5F3W A;  4F0Z A;  2BQ8 X;  2GJU A;  4YKE A;  2Q8U A;  2CV9 A;  2HY1 A;  1M63 A;  5IOH A;  2O8A A;  4H2I A;  3P71 C;  1TCO A;  1QHW A;  3GVE A;  5GTU A;  1S95 A;  1OI8 A;  2AHD A;  1KBP A;  2DXN A;  3RL4 A;  4DT2 A;  4NZV A;  2Z1A A;  4ORC A;  4UT3 A;  4H1S A;  3DW8 C;  3PSN A;  5EQV A;  2ZOA A;  4V0X A;  3ZU0 A;  2BDX A;  3FLO A;  4I5N C;  4LU9 A;  4O24 A;  3C9F A;  4H2G A;  3IB8 A;  3H60 A;  4LTY A;  1S3M A;  4IL1 A;  1QFC A;  3AV0 A;  4O5G A;  4O4K A;  3IVE A;  3C5W C;  5HPE A;  5INB A;  5J28 A;  3DSD A;  2IAE C;  4KBP A;  3H64 A;  3EGG A;  4V0V A;  3H66 A;  2Z06 A; 
#chains in the Genus database with same CATH homology
 4ORA A;  1FJM A;  1SU1 A;  2HYO A;  2QFP A;  4Q7F A;  2IE3 C;  3DSC A;  1S3N A;  1IT6 A;  2ZBM A;  3T1I A;  4DHL A;  4XPN A;  1Z2X A;  3QG5 C;  5JPF A;  3EGH A;  3QFO A;  2WDE A;  4H1Y P;  1USH A;  1S8E A;  1XM7 A;  3V4Y A;  2NXF A;  1V73 A;  2A22 A;  4JA7 A;  3ZTV A;  2NYL C;  1AUI A;  2JOG A;  1XZW A;  3THN A;  3LL8 A;  4UT3 B;  4ZVZ A;  3JYF A;  1U32 A;  1JK7 A;  1T70 A;  2ZO9 B;  1NNW A;  3ICF A;  4MOV A;  1G5B A;  2WDF A;  4HD0 A;  3IVD A;  3RL3 A;  3E7B A;  1HPU A;  2NPP C;  4G9J A;  3D03 A;  2R17 A;  2IE4 C;  3AUZ A;  1OIE A;  4I5L C;  3RL5 A;  3PSO A;  4UT2 A;  3QFN A;  3H68 A;  1UTE A;  1Z2W A;  3H63 A;  1WAO 1;  1W24 A;  1HP1 A;  4ORB A;  2Z72 A;  3FGA C;  4FBQ A;  1S3L A;  4TUI A;  4LAC C;  1HO5 A;  2HYP A;  3TGH A;  4MP0 A;  4WWL A;  4IYP C;  4J6O A;  4FBW A;  3IB7 A;  2YVT A;  4V0W A;  3THO B;  1OID A;  1II7 A;  4B2O A;  5DNY A;  3K7W C;  1T71 A;  4FBK A;  3H67 A;  4M0V A;  4MOY A;  5B8I A;  3E0J A;  2QJC A;  2WDC A;  4ZX2 A;  2WDD A;  3CK2 A;  2DFJ A;  4FCX A;  1S70 A;  3H62 B;  4DSY A;  3E7A A;  4TUG A;  2QFR A;  4OR9 A;  4KKZ A;  3H61 A;  2O8G A;  2NYM C;  3K7V C;  3RQZ A;  1UF3 A;  4H2F A;  2USH A;  3QFM A;  3H69 A;  2XMO A;  2KKN A;  1MF8 A;  3KBP A;  4H2B A;  5C1V A;  2YEQ A;  4JA9 A;  3QFK A;  4O43 A;  3HVQ A;  4UWQ A;  2P6B A;  1WAR A;  5JPE A;  3N5U A;  5JJT A;  2DXL A;  2BCD A;  5F3W A;  4F0Z A;  2BQ8 X;  2GJU A;  4YKE A;  2Q8U A;  2CV9 A;  2HY1 A;  1M63 A;  5IOH A;  2O8A A;  4H2I A;  3P71 C;  1TCO A;  1QHW A;  3GVE A;  5GTU A;  1S95 A;  1OI8 A;  2AHD A;  1KBP A;  2DXN A;  3RL4 A;  4DT2 A;  4NZV A;  2Z1A A;  4ORC A;  4UT3 A;  4H1S A;  3DW8 C;  3PSN A;  5EQV A;  2ZOA A;  4V0X A;  3ZU0 A;  2BDX A;  3FLO A;  4I5N C;  4LU9 A;  4O24 A;  3C9F A;  4H2G A;  3IB8 A;  3H60 A;  4LTY A;  1S3M A;  4IL1 A;  1QFC A;  3AV0 A;  4O5G A;  4O4K A;  3IVE A;  3C5W C;  5HPE A;  5INB A;  5J28 A;  3DSD A;  2IAE C;  4KBP A;  3H64 A;  3EGG A;  4V0V A;  3H66 A;  2Z06 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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