1SVRA

Structure of severin domain 2 in solution
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
94
structure length
94
Chain Sequence
EYKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLLGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Actin-binding
molecule keywords SEVERIN
publication title Structure of severin domain 2 in solution.
pubmed doi rcsb
source organism Dictyostelium discoideum
total genus 16
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 1994-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1svrA00
1T3YA 1WNJA 1ESVS 4PKHB 5KYYA 1DEJS 3EGXA 4PKIG 5KYUA 3EH2A 3EG9B 1SVYA 3EFOB 5L6WC 5A1MA 5DD2A 3TU5B 1C0GS 1WM4A 1M2VA 1UDMA 5KYXB 2FF6G 4BEX1 2NUTA 1MDUA 1F7SA 1J72A 1M4JA 2XFAA 1RGIG 2VACA 2MOTA 2VIKA 5KYNA 1AK7A 4KEEA 5FAEA 1CFYA 4CBXG 2W0IA 2FH3A 3Q2BA 1SVQA 3A5OS 3EG9A 2L72A 3CJBG 3EGDB 3EFOA 3A5NS 4KEFA 1NM1G 2QTVA 1H1VG 2FH4A 5KYXA 1AK6A 5KYWB 2LXXA 5HVKB 3CIPG 2LJ8A 3L50A 1EQYS 1PD0A 2FH1A 4CBUG 1YVNG 1C0FS 3DAWB 2FGHA 2I2QA 2LLFA 3FFNA 1YAGG 5HVKD 1NPHA 1NMDG 1D4XG 1M2OA 3CJCG 1PCXA 3EGDA 1T44G 2D8BA 1P8ZG 1JHWA 1M2VB 4CBWG 1Q8GA 1T3XA 2NUPB 2KVKA 1PD1A 3A5MS 2HD7A 2NUTB 5KYWA 4KEDA 2XF1A 1KCQA 2MV2A 1SVRA 1VFQA 2FF3A 1Q8XA 4Z94G 1COFA 3EH1A 3CI5G 4LIZA 5KYYB 2VILA 3EGXB 4JD2H 5IVUA 5KYUB 3FG6A 3FFKA 1TVJA 1HQZ1 1QPVA 1P8XA 1V6FA 1T2LA 5FAFA 2NUPA 1NLVG 1VKKA 2MP4A 1AHQA 1D0NA 4S10C 2FH2A 4PKGG 1X67A 1WFSA 1TMWA 3A5LS 1CNUA 3FG7A
chains in the Genus database with same CATH superfamily
1T3YA 1WNJA 1ESVS 4PKHB 5KYYA 1DEJS 3EGXA 4PKIG 5KYUA 3EH2A 3EG9B 1SVYA 3EFOB 5L6WC 5A1MA 5DD2A 3TU5B 1C0GS 1WM4A 1M2VA 1UDMA 5KYXB 2FF6G 4BEX1 2NUTA 1MDUA 1F7SA 1J72A 1M4JA 2XFAA 1RGIG 2VACA 2MOTA 2VIKA 5KYNA 1AK7A 4KEEA 5FAEA 1CFYA 4CBXG 2W0IA 2FH3A 3Q2BA 1SVQA 3A5OS 3EG9A 2L72A 3CJBG 3EGDB 3EFOA 3A5NS 4KEFA 1NM1G 2QTVA 1H1VG 2FH4A 5KYXA 1AK6A 5KYWB 2LXXA 5HVKB 3CIPG 2LJ8A 3L50A 1EQYS 1PD0A 2FH1A 4CBUG 1YVNG 1C0FS 3DAWB 2FGHA 2I2QA 2LLFA 3FFNA 1YAGG 5HVKD 1NPHA 1NMDG 1D4XG 1M2OA 3CJCG 1PCXA 3EGDA 1T44G 2D8BA 1P8ZG 3DA7A 1JHWA 1M2VB 4CBWG 1Q8GA 1T3XA 2NUPB 2KVKA 1PD1A 3A5MS 2HD7A 2NUTB 5KYWA 4KEDA 2XF1A 1KCQA 2MV2A 1SVRA 1VFQA 2FF3A 1Q8XA 4Z94G 1COFA 3EH1A 3CI5G 4LIZA 5KYYB 2VILA 3EGXB 4JD2H 5IVUA 5KYUB 3FG6A 3FFKA 1TVJA 1HQZ1 1QPVA 1P8XA 1V6FA 1T2LA 5FAFA 2NUPA 1NLVG 1VKKA 2MP4A 1AHQA 1D0NA 4S10C 2FH2A 4PKGG 1X67A 1WFSA 1TMWA 3A5LS 1CNUA 3FG7A
chains in the Genus database with same CATH topology
1T3YA 1WNJA 1ESVS 4PKHB 5KYYA 1DEJS 3EGXA 4PKIG 5KYUA 3EH2A 3EG9B 1SVYA 3EFOB 5L6WC 5A1MA 5DD2A 3TU5B 1C0GS 1WM4A 1M2VA 1UDMA 5KYXB 2FF6G 4BEX1 2NUTA 1MDUA 1F7SA 1J72A 1M4JA 2XFAA 1RGIG 2VACA 2MOTA 2VIKA 5KYNA 1AK7A 4KEEA 5FAEA 1CFYA 4CBXG 2W0IA 2FH3A 3Q2BA 1SVQA 3A5OS 3EG9A 2L72A 3CJBG 3EGDB 3EFOA 3A5NS 4KEFA 1NM1G 2QTVA 1H1VG 2FH4A 5KYXA 1AK6A 5KYWB 2LXXA 5HVKB 3CIPG 2LJ8A 3L50A 1EQYS 1PD0A 2FH1A 4CBUG 1YVNG 1C0FS 3DAWB 2FGHA 2I2QA 2LLFA 3FFNA 1YAGG 5HVKD 1NPHA 1NMDG 1D4XG 1M2OA 3CJCG 1PCXA 3EGDA 1T44G 2D8BA 1P8ZG 3DA7A 1JHWA 1M2VB 4CBWG 1Q8GA 1T3XA 2NUPB 2KVKA 1PD1A 3A5MS 2HD7A 2NUTB 5KYWA 4KEDA 2XF1A 1KCQA 2MV2A 1SVRA 1VFQA 2FF3A 1Q8XA 4Z94G 1COFA 3EH1A 3CI5G 4LIZA 5KYYB 2VILA 3EGXB 4JD2H 5IVUA 5KYUB 3FG6A 3FFKA 1TVJA 1HQZ1 1QPVA 1P8XA 1V6FA 1T2LA 5FAFA 2NUPA 1NLVG 1VKKA 2MP4A 1AHQA 1D0NA 4S10C 2FH2A 4PKGG 1X67A 1WFSA 1TMWA 3A5LS 1CNUA 3FG7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T3Y A;  1WNJ A;  1ESV S;  4PKH B;  5KYY A;  1DEJ S;  3EGX A;  4PKI G;  5KYU A;  3EH2 A;  3EG9 B;  1SVY A;  3EFO B;  5L6W C;  5A1M A;  5DD2 A;  3TU5 B;  1C0G S;  1WM4 A;  1M2V A;  1UDM A;  5KYX B;  2FF6 G;  4BEX 1;  2NUT A;  1MDU A;  1F7S A;  1J72 A;  1M4J A;  2XFA A;  1RGI G;  2VAC A;  2MOT A;  2VIK A;  5KYN A;  1AK7 A;  4KEE A;  5FAE A;  1CFY A;  4CBX G;  2W0I A;  2FH3 A;  3Q2B A;  1SVQ A;  3A5O S;  3EG9 A;  2L72 A;  3CJB G;  3EGD B;  3EFO A;  3A5N S;  4KEF A;  1NM1 G;  2QTV A;  1H1V G;  2FH4 A;  5KYX A;  1AK6 A;  5KYW B;  2LXX A;  5HVK B;  3CIP G;  2LJ8 A;  3L50 A;  1EQY S;  1PD0 A;  2FH1 A;  4CBU G;  1YVN G;  1C0F S;  3DAW B;  2FGH A;  2I2Q A;  2LLF A;  3FFN A;  1YAG G;  5HVK D;  1NPH A;  1NMD G;  1D4X G;  1M2O A;  3CJC G;  1PCX A;  3EGD A;  1T44 G;  2D8B A;  1P8Z G;  1JHW A;  1M2V B;  4CBW G;  1Q8G A;  1T3X A;  2NUP B;  2KVK A;  1PD1 A;  3A5M S;  2HD7 A;  2NUT B;  5KYW A;  4KED A;  2XF1 A;  1KCQ A;  2MV2 A;  1SVR A;  1VFQ A;  2FF3 A;  1Q8X A;  4Z94 G;  1COF A;  3EH1 A;  3CI5 G;  4LIZ A;  5KYY B;  2VIL A;  3EGX B;  4JD2 H;  5IVU A;  5KYU B;  3FG6 A;  3FFK A;  1TVJ A;  1HQZ 1;  1QPV A;  1P8X A;  1V6F A;  1T2L A;  5FAF A;  2NUP A;  1NLV G;  1VKK A;  2MP4 A;  1AHQ A;  1D0N A;  4S10 C;  2FH2 A;  4PKG G;  1X67 A;  1WFS A;  1TMW A;  3A5L S;  1CNU A;  3FG7 A; 
#chains in the Genus database with same CATH topology
 1T3Y A;  1WNJ A;  1ESV S;  4PKH B;  5KYY A;  1DEJ S;  3EGX A;  4PKI G;  5KYU A;  3EH2 A;  3EG9 B;  1SVY A;  3EFO B;  5L6W C;  5A1M A;  5DD2 A;  3TU5 B;  1C0G S;  1WM4 A;  1M2V A;  1UDM A;  5KYX B;  2FF6 G;  4BEX 1;  2NUT A;  1MDU A;  1F7S A;  1J72 A;  1M4J A;  2XFA A;  1RGI G;  2VAC A;  2MOT A;  2VIK A;  5KYN A;  1AK7 A;  4KEE A;  5FAE A;  1CFY A;  4CBX G;  2W0I A;  2FH3 A;  3Q2B A;  1SVQ A;  3A5O S;  3EG9 A;  2L72 A;  3CJB G;  3EGD B;  3EFO A;  3A5N S;  4KEF A;  1NM1 G;  2QTV A;  1H1V G;  2FH4 A;  5KYX A;  1AK6 A;  5KYW B;  2LXX A;  5HVK B;  3CIP G;  2LJ8 A;  3L50 A;  1EQY S;  1PD0 A;  2FH1 A;  4CBU G;  1YVN G;  1C0F S;  3DAW B;  2FGH A;  2I2Q A;  2LLF A;  3FFN A;  1YAG G;  5HVK D;  1NPH A;  1NMD G;  1D4X G;  1M2O A;  3CJC G;  1PCX A;  3EGD A;  1T44 G;  2D8B A;  1P8Z G;  3DA7 A;  1JHW A;  1M2V B;  4CBW G;  1Q8G A;  1T3X A;  2NUP B;  2KVK A;  1PD1 A;  3A5M S;  2HD7 A;  2NUT B;  5KYW A;  4KED A;  2XF1 A;  1KCQ A;  2MV2 A;  1SVR A;  1VFQ A;  2FF3 A;  1Q8X A;  4Z94 G;  1COF A;  3EH1 A;  3CI5 G;  4LIZ A;  5KYY B;  2VIL A;  3EGX B;  4JD2 H;  5IVU A;  5KYU B;  3FG6 A;  3FFK A;  1TVJ A;  1HQZ 1;  1QPV A;  1P8X A;  1V6F A;  1T2L A;  5FAF A;  2NUP A;  1NLV G;  1VKK A;  2MP4 A;  1AHQ A;  1D0N A;  4S10 C;  2FH2 A;  4PKG G;  1X67 A;  1WFS A;  1TMW A;  3A5L S;  1CNU A;  3FG7 A; 
#chains in the Genus database with same CATH homology
 1T3Y A;  1WNJ A;  1ESV S;  4PKH B;  5KYY A;  1DEJ S;  3EGX A;  4PKI G;  5KYU A;  3EH2 A;  3EG9 B;  1SVY A;  3EFO B;  5L6W C;  5A1M A;  5DD2 A;  3TU5 B;  1C0G S;  1WM4 A;  1M2V A;  1UDM A;  5KYX B;  2FF6 G;  4BEX 1;  2NUT A;  1MDU A;  1F7S A;  1J72 A;  1M4J A;  2XFA A;  1RGI G;  2VAC A;  2MOT A;  2VIK A;  5KYN A;  1AK7 A;  4KEE A;  5FAE A;  1CFY A;  4CBX G;  2W0I A;  2FH3 A;  3Q2B A;  1SVQ A;  3A5O S;  3EG9 A;  2L72 A;  3CJB G;  3EGD B;  3EFO A;  3A5N S;  4KEF A;  1NM1 G;  2QTV A;  1H1V G;  2FH4 A;  5KYX A;  1AK6 A;  5KYW B;  2LXX A;  5HVK B;  3CIP G;  2LJ8 A;  3L50 A;  1EQY S;  1PD0 A;  2FH1 A;  4CBU G;  1YVN G;  1C0F S;  3DAW B;  2FGH A;  2I2Q A;  2LLF A;  3FFN A;  1YAG G;  5HVK D;  1NPH A;  1NMD G;  1D4X G;  1M2O A;  3CJC G;  1PCX A;  3EGD A;  1T44 G;  2D8B A;  1P8Z G;  3DA7 A;  1JHW A;  1M2V B;  4CBW G;  1Q8G A;  1T3X A;  2NUP B;  2KVK A;  1PD1 A;  3A5M S;  2HD7 A;  2NUT B;  5KYW A;  4KED A;  2XF1 A;  1KCQ A;  2MV2 A;  1SVR A;  1VFQ A;  2FF3 A;  1Q8X A;  4Z94 G;  1COF A;  3EH1 A;  3CI5 G;  4LIZ A;  5KYY B;  2VIL A;  3EGX B;  4JD2 H;  5IVU A;  5KYU B;  3FG6 A;  3FFK A;  1TVJ A;  1HQZ 1;  1QPV A;  1P8X A;  1V6F A;  1T2L A;  5FAF A;  2NUP A;  1NLV G;  1VKK A;  2MP4 A;  1AHQ A;  1D0N A;  4S10 C;  2FH2 A;  4PKG G;  1X67 A;  1WFS A;  1TMW A;  3A5L S;  1CNU A;  3FG7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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