1T71A

Crystal structure of a novel phosphatase mycoplasma pneumoniaefrom
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
281
structure length
281
Chain Sequence
MMNSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLLGTSVPLPFKTTNPFKVLKELILKRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIFGTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSREHFEVSKCGAQLNGVFFEVDVNTKKVIKTEAIRIVEDDPRYLKQDYFNLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Hydrolase
molecule keywords phosphatase
publication title Crystal structure of a novel phosphatase from Mycoplasma pneumoniae
rcsb
source organism Mycoplasma pneumoniae m129
total genus 78
structure length 281
sequence length 281
ec nomenclature
pdb deposition date 2004-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1t71A00
4B2OA 5JPEA 2GJUA 3JYFA 1G5BA 1S95A 3GVEA 4M0VA 4H1SA 2Z1AA 5HPEA 2NYMC 4OR9A 1S3LA 2IAEC 3AUZA 3RL4A 2IE4C 4H2BA 1S8EA 1T71A 2HY1A 3H67A 4FBQA 4ZX2A 2Z72A 1WARA 4H2FA 5IOHA 5EQVA 2WDFA 3E7AA 3T1IA 2QFPA 2Q8UA 3KBPA 1USHA 1JK7A 3N5UA 3H69A 4O43A 1QHWA 2ZBMA 4UT3B 3THNA 3V4YA 2BCDA 3LL8A 5JJTA 1IT6A 3ZU0A 2O8AA 3H61A 3P71C 2DFJA 1HP1A 2AHDA 4UT3A 3DSDA 2O8GA 3RL5A 3K7VC 2R17A 2A22A 4NZVA 4MP0A 3RQZA 3IB7A 1UF3A 2QFRA 4XPNA 3K7WC 4WWLA 1SU1A 4I5LC 1S3MA 4FBWA 4O4KA 2CV9A 4DSYA 1TCOA 3PSOA 2YVTA 2Z06A 2NYLC 3E7BA 1T70A 4KBPA 3H63A 4HD0A 5DNYA 3H66A 4G9JA 4ORAA 1WAO1 4ORCA 4F0ZA 2IE3C 4JA9A 3C9FA 3H68A 3H64A 4IYPC 4IL1A 3TGHA 4UWQA 3AV0A 4UT2A 4ZVZA 1OIEA 4KKZA 4TUGA 3H62B 1W24A 2NPPC 1XZWA 4H2IA 4H2GA 2NXFA 3C5WC 3QFOA 4V0WA 5C1VA 4V0XA 3EGGA 1II7A 2BDXA 5JPFA 1OI8A 3DSCA 1UTEA 2XMOA 3HVQA 1HPUA 2P6BA 3IVDA 1OIDA 3IVEA 1Z2WA 3QG5C 4I5NC 2WDEA 1S3NA 5J28A 1FJMA 3H60A 1S70A 1XM7A 4Q7FA 4O5GA 1HO5A 2QJCA 3CK2A 4H1YP 4DT2A 5GTUA 3PSNA 3FGAC 3QFKA 1AUIA 3THOB 2WDDA 4YKEA 4JA7A 4TUIA 3IB8A 1V73A 2KKNA 3ZTVA 1U32A 4FCXA 3QFMA 3DW8C 2BQ8X 1NNWA 4MOVA 4O24A 3EGHA 1Z2XA 4J6OA 2USHA 5B8IA 4ORBA 3RL3A 4LTYA 4LU9A 2HYPA 5F3WA 4LACC 1QFCA 5INBA 1MF8A 3QFNA 3ICFA 4FBKA 4MOYA 1KBPA 2HYOA 4V0VA 1M63A 2JOGA 2WDCA 4DHLA
chains in the Genus database with same CATH superfamily
4B2OA 5JPEA 2GJUA 3JYFA 1G5BA 1S95A 3GVEA 4M0VA 4H1SA 2Z1AA 5HPEA 2NYMC 4OR9A 1S3LA 2DXLA 2IAEC 3AUZA 3RL4A 2IE4C 4H2BA 1S8EA 1T71A 2HY1A 2ZO9B 3H67A 4FBQA 2Z72A 1WARA 4ZX2A 4H2FA 5IOHA 5EQVA 2WDFA 3E7AA 3T1IA 2QFPA 2Q8UA 3KBPA 1USHA 1JK7A 3N5UA 3H69A 4O43A 1QHWA 2ZBMA 4UT3B 3THNA 3V4YA 2BCDA 3LL8A 5JJTA 1IT6A 3ZU0A 2O8AA 3H61A 3P71C 2DFJA 1HP1A 2AHDA 4UT3A 3DSDA 2O8GA 3RL5A 3K7VC 2R17A 2A22A 4NZVA 4MP0A 3RQZA 3IB7A 1UF3A 2QFRA 4XPNA 3K7WC 4WWLA 1SU1A 4I5LC 1S3MA 2YEQA 4FBWA 4O4KA 2CV9A 4DSYA 1TCOA 3PSOA 2YVTA 2Z06A 2NYLC 3E7BA 1T70A 4KBPA 2ZOAA 3H63A 4HD0A 5DNYA 3H66A 4G9JA 4ORAA 1WAO1 4ORCA 4F0ZA 2IE3C 4JA9A 3C9FA 3H68A 3H64A 4IYPC 4IL1A 3TGHA 4UWQA 3AV0A 4UT2A 4ZVZA 1OIEA 4KKZA 4TUGA 3H62B 1W24A 2NPPC 1XZWA 4H2IA 4H2GA 2NXFA 3C5WC 3QFOA 4V0WA 5C1VA 4V0XA 3EGGA 1II7A 2BDXA 5JPFA 1OI8A 3DSCA 1UTEA 2XMOA 3HVQA 1HPUA 2P6BA 3IVDA 1OIDA 3IVEA 1Z2WA 3QG5C 4I5NC 2WDEA 1S3NA 5J28A 1FJMA 3H60A 1S70A 1XM7A 4Q7FA 4O5GA 1HO5A 2QJCA 3CK2A 4H1YP 4DT2A 5GTUA 3PSNA 3FGAC 3QFKA 1AUIA 3THOB 2WDDA 4YKEA 3FLOA 4JA7A 3D03A 4TUIA 3IB8A 1V73A 2KKNA 3ZTVA 1U32A 4FCXA 3QFMA 3DW8C 2BQ8X 1NNWA 4MOVA 4O24A 3E0JA 3EGHA 1Z2XA 4J6OA 2USHA 5B8IA 4ORBA 3RL3A 4LTYA 4LU9A 2HYPA 5F3WA 4LACC 1QFCA 5INBA 1MF8A 3QFNA 3ICFA 4FBKA 4MOYA 1KBPA 2HYOA 4V0VA 1M63A 2JOGA 2WDCA 4DHLA 2DXNA
chains in the Genus database with same CATH topology
4B2OA 5JPEA 2GJUA 3JYFA 1G5BA 1S95A 3GVEA 4M0VA 4H1SA 2Z1AA 5HPEA 2NYMC 4OR9A 1S3LA 2DXLA 2IAEC 3AUZA 3RL4A 2IE4C 4H2BA 1S8EA 1T71A 2HY1A 2ZO9B 3H67A 4FBQA 2Z72A 1WARA 4ZX2A 4H2FA 5IOHA 5EQVA 2WDFA 3E7AA 3T1IA 2QFPA 2Q8UA 3KBPA 1USHA 1JK7A 3N5UA 3H69A 4O43A 1QHWA 2ZBMA 4UT3B 3THNA 3V4YA 2BCDA 3LL8A 5JJTA 1IT6A 3ZU0A 2O8AA 3H61A 3P71C 2DFJA 1HP1A 2AHDA 4UT3A 3DSDA 2O8GA 3RL5A 3K7VC 2R17A 2A22A 4NZVA 4MP0A 3RQZA 3IB7A 1UF3A 2QFRA 4XPNA 3K7WC 4WWLA 1SU1A 4I5LC 1S3MA 2YEQA 4FBWA 4O4KA 2CV9A 4DSYA 1TCOA 3PSOA 2YVTA 2Z06A 2NYLC 3E7BA 1T70A 4KBPA 2ZOAA 3H63A 4HD0A 5DNYA 3H66A 4G9JA 4ORAA 1WAO1 4ORCA 4F0ZA 2IE3C 4JA9A 3C9FA 3H68A 3H64A 4IYPC 4IL1A 3TGHA 4UWQA 3AV0A 4UT2A 4ZVZA 1OIEA 4KKZA 4TUGA 3H62B 1W24A 2NPPC 1XZWA 4H2IA 4H2GA 2NXFA 3C5WC 3QFOA 4V0WA 5C1VA 4V0XA 3EGGA 1II7A 2BDXA 5JPFA 1OI8A 3DSCA 1UTEA 2XMOA 3HVQA 1HPUA 2P6BA 3IVDA 1OIDA 3IVEA 1Z2WA 3QG5C 4I5NC 2WDEA 1S3NA 5J28A 1FJMA 3H60A 1S70A 1XM7A 4Q7FA 4O5GA 1HO5A 2QJCA 3CK2A 4H1YP 4DT2A 5GTUA 3PSNA 3FGAC 3QFKA 1AUIA 3THOB 2WDDA 4YKEA 3FLOA 4JA7A 3D03A 4TUIA 3IB8A 1V73A 2KKNA 3ZTVA 1U32A 4FCXA 3QFMA 3DW8C 2BQ8X 1NNWA 4MOVA 4O24A 3E0JA 3EGHA 1Z2XA 4J6OA 2USHA 5B8IA 4ORBA 3RL3A 4LTYA 4LU9A 2HYPA 5F3WA 4LACC 1QFCA 5INBA 1MF8A 3QFNA 3ICFA 4FBKA 4MOYA 1KBPA 2HYOA 4V0VA 1M63A 2JOGA 2WDCA 4DHLA 2DXNA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4B2O A;  5JPE A;  2GJU A;  3JYF A;  1G5B A;  1S95 A;  3GVE A;  4M0V A;  4H1S A;  2Z1A A;  5HPE A;  2NYM C;  4OR9 A;  1S3L A;  2IAE C;  3AUZ A;  3RL4 A;  2IE4 C;  4H2B A;  1S8E A;  1T71 A;  2HY1 A;  3H67 A;  4FBQ A;  4ZX2 A;  2Z72 A;  1WAR A;  4H2F A;  5IOH A;  5EQV A;  2WDF A;  3E7A A;  3T1I A;  2QFP A;  2Q8U A;  3KBP A;  1USH A;  1JK7 A;  3N5U A;  3H69 A;  4O43 A;  1QHW A;  2ZBM A;  4UT3 B;  3THN A;  3V4Y A;  2BCD A;  3LL8 A;  5JJT A;  1IT6 A;  3ZU0 A;  2O8A A;  3H61 A;  3P71 C;  2DFJ A;  1HP1 A;  2AHD A;  4UT3 A;  3DSD A;  2O8G A;  3RL5 A;  3K7V C;  2R17 A;  2A22 A;  4NZV A;  4MP0 A;  3RQZ A;  3IB7 A;  1UF3 A;  2QFR A;  4XPN A;  3K7W C;  4WWL A;  1SU1 A;  4I5L C;  1S3M A;  4FBW A;  4O4K A;  2CV9 A;  4DSY A;  1TCO A;  3PSO A;  2YVT A;  2Z06 A;  2NYL C;  3E7B A;  1T70 A;  4KBP A;  3H63 A;  4HD0 A;  5DNY A;  3H66 A;  4G9J A;  4ORA A;  1WAO 1;  4ORC A;  4F0Z A;  2IE3 C;  4JA9 A;  3C9F A;  3H68 A;  3H64 A;  4IYP C;  4IL1 A;  3TGH A;  4UWQ A;  3AV0 A;  4UT2 A;  4ZVZ A;  1OIE A;  4KKZ A;  4TUG A;  3H62 B;  1W24 A;  2NPP C;  1XZW A;  4H2I A;  4H2G A;  2NXF A;  3C5W C;  3QFO A;  4V0W A;  5C1V A;  4V0X A;  3EGG A;  1II7 A;  2BDX A;  5JPF A;  1OI8 A;  3DSC A;  1UTE A;  2XMO A;  3HVQ A;  1HPU A;  2P6B A;  3IVD A;  1OID A;  3IVE A;  1Z2W A;  3QG5 C;  4I5N C;  2WDE A;  1S3N A;  5J28 A;  1FJM A;  3H60 A;  1S70 A;  1XM7 A;  4Q7F A;  4O5G A;  1HO5 A;  2QJC A;  3CK2 A;  4H1Y P;  4DT2 A;  5GTU A;  3PSN A;  3FGA C;  3QFK A;  1AUI A;  3THO B;  2WDD A;  4YKE A;  4JA7 A;  4TUI A;  3IB8 A;  1V73 A;  2KKN A;  3ZTV A;  1U32 A;  4FCX A;  3QFM A;  3DW8 C;  2BQ8 X;  1NNW A;  4MOV A;  4O24 A;  3EGH A;  1Z2X A;  4J6O A;  2USH A;  5B8I A;  4ORB A;  3RL3 A;  4LTY A;  4LU9 A;  2HYP A;  5F3W A;  4LAC C;  1QFC A;  5INB A;  1MF8 A;  3QFN A;  3ICF A;  4FBK A;  4MOY A;  1KBP A;  2HYO A;  4V0V A;  1M63 A;  2JOG A;  2WDC A;  4DHL A; 
#chains in the Genus database with same CATH topology
 4B2O A;  5JPE A;  2GJU A;  3JYF A;  1G5B A;  1S95 A;  3GVE A;  4M0V A;  4H1S A;  2Z1A A;  5HPE A;  2NYM C;  4OR9 A;  1S3L A;  2DXL A;  2IAE C;  3AUZ A;  3RL4 A;  2IE4 C;  4H2B A;  1S8E A;  1T71 A;  2HY1 A;  2ZO9 B;  3H67 A;  4FBQ A;  2Z72 A;  1WAR A;  4ZX2 A;  4H2F A;  5IOH A;  5EQV A;  2WDF A;  3E7A A;  3T1I A;  2QFP A;  2Q8U A;  3KBP A;  1USH A;  1JK7 A;  3N5U A;  3H69 A;  4O43 A;  1QHW A;  2ZBM A;  4UT3 B;  3THN A;  3V4Y A;  2BCD A;  3LL8 A;  5JJT A;  1IT6 A;  3ZU0 A;  2O8A A;  3H61 A;  3P71 C;  2DFJ A;  1HP1 A;  2AHD A;  4UT3 A;  3DSD A;  2O8G A;  3RL5 A;  3K7V C;  2R17 A;  2A22 A;  4NZV A;  4MP0 A;  3RQZ A;  3IB7 A;  1UF3 A;  2QFR A;  4XPN A;  3K7W C;  4WWL A;  1SU1 A;  4I5L C;  1S3M A;  2YEQ A;  4FBW A;  4O4K A;  2CV9 A;  4DSY A;  1TCO A;  3PSO A;  2YVT A;  2Z06 A;  2NYL C;  3E7B A;  1T70 A;  4KBP A;  2ZOA A;  3H63 A;  4HD0 A;  5DNY A;  3H66 A;  4G9J A;  4ORA A;  1WAO 1;  4ORC A;  4F0Z A;  2IE3 C;  4JA9 A;  3C9F A;  3H68 A;  3H64 A;  4IYP C;  4IL1 A;  3TGH A;  4UWQ A;  3AV0 A;  4UT2 A;  4ZVZ A;  1OIE A;  4KKZ A;  4TUG A;  3H62 B;  1W24 A;  2NPP C;  1XZW A;  4H2I A;  4H2G A;  2NXF A;  3C5W C;  3QFO A;  4V0W A;  5C1V A;  4V0X A;  3EGG A;  1II7 A;  2BDX A;  5JPF A;  1OI8 A;  3DSC A;  1UTE A;  2XMO A;  3HVQ A;  1HPU A;  2P6B A;  3IVD A;  1OID A;  3IVE A;  1Z2W A;  3QG5 C;  4I5N C;  2WDE A;  1S3N A;  5J28 A;  1FJM A;  3H60 A;  1S70 A;  1XM7 A;  4Q7F A;  4O5G A;  1HO5 A;  2QJC A;  3CK2 A;  4H1Y P;  4DT2 A;  5GTU A;  3PSN A;  3FGA C;  3QFK A;  1AUI A;  3THO B;  2WDD A;  4YKE A;  3FLO A;  4JA7 A;  3D03 A;  4TUI A;  3IB8 A;  1V73 A;  2KKN A;  3ZTV A;  1U32 A;  4FCX A;  3QFM A;  3DW8 C;  2BQ8 X;  1NNW A;  4MOV A;  4O24 A;  3E0J A;  3EGH A;  1Z2X A;  4J6O A;  2USH A;  5B8I A;  4ORB A;  3RL3 A;  4LTY A;  4LU9 A;  2HYP A;  5F3W A;  4LAC C;  1QFC A;  5INB A;  1MF8 A;  3QFN A;  3ICF A;  4FBK A;  4MOY A;  1KBP A;  2HYO A;  4V0V A;  1M63 A;  2JOG A;  2WDC A;  4DHL A;  2DXN A; 
#chains in the Genus database with same CATH homology
 4B2O A;  5JPE A;  2GJU A;  3JYF A;  1G5B A;  1S95 A;  3GVE A;  4M0V A;  4H1S A;  2Z1A A;  5HPE A;  2NYM C;  4OR9 A;  1S3L A;  2DXL A;  2IAE C;  3AUZ A;  3RL4 A;  2IE4 C;  4H2B A;  1S8E A;  1T71 A;  2HY1 A;  2ZO9 B;  3H67 A;  4FBQ A;  2Z72 A;  1WAR A;  4ZX2 A;  4H2F A;  5IOH A;  5EQV A;  2WDF A;  3E7A A;  3T1I A;  2QFP A;  2Q8U A;  3KBP A;  1USH A;  1JK7 A;  3N5U A;  3H69 A;  4O43 A;  1QHW A;  2ZBM A;  4UT3 B;  3THN A;  3V4Y A;  2BCD A;  3LL8 A;  5JJT A;  1IT6 A;  3ZU0 A;  2O8A A;  3H61 A;  3P71 C;  2DFJ A;  1HP1 A;  2AHD A;  4UT3 A;  3DSD A;  2O8G A;  3RL5 A;  3K7V C;  2R17 A;  2A22 A;  4NZV A;  4MP0 A;  3RQZ A;  3IB7 A;  1UF3 A;  2QFR A;  4XPN A;  3K7W C;  4WWL A;  1SU1 A;  4I5L C;  1S3M A;  2YEQ A;  4FBW A;  4O4K A;  2CV9 A;  4DSY A;  1TCO A;  3PSO A;  2YVT A;  2Z06 A;  2NYL C;  3E7B A;  1T70 A;  4KBP A;  2ZOA A;  3H63 A;  4HD0 A;  5DNY A;  3H66 A;  4G9J A;  4ORA A;  1WAO 1;  4ORC A;  4F0Z A;  2IE3 C;  4JA9 A;  3C9F A;  3H68 A;  3H64 A;  4IYP C;  4IL1 A;  3TGH A;  4UWQ A;  3AV0 A;  4UT2 A;  4ZVZ A;  1OIE A;  4KKZ A;  4TUG A;  3H62 B;  1W24 A;  2NPP C;  1XZW A;  4H2I A;  4H2G A;  2NXF A;  3C5W C;  3QFO A;  4V0W A;  5C1V A;  4V0X A;  3EGG A;  1II7 A;  2BDX A;  5JPF A;  1OI8 A;  3DSC A;  1UTE A;  2XMO A;  3HVQ A;  1HPU A;  2P6B A;  3IVD A;  1OID A;  3IVE A;  1Z2W A;  3QG5 C;  4I5N C;  2WDE A;  1S3N A;  5J28 A;  1FJM A;  3H60 A;  1S70 A;  1XM7 A;  4Q7F A;  4O5G A;  1HO5 A;  2QJC A;  3CK2 A;  4H1Y P;  4DT2 A;  5GTU A;  3PSN A;  3FGA C;  3QFK A;  1AUI A;  3THO B;  2WDD A;  4YKE A;  3FLO A;  4JA7 A;  3D03 A;  4TUI A;  3IB8 A;  1V73 A;  2KKN A;  3ZTV A;  1U32 A;  4FCX A;  3QFM A;  3DW8 C;  2BQ8 X;  1NNW A;  4MOV A;  4O24 A;  3E0J A;  3EGH A;  1Z2X A;  4J6O A;  2USH A;  5B8I A;  4ORB A;  3RL3 A;  4LTY A;  4LU9 A;  2HYP A;  5F3W A;  4LAC C;  1QFC A;  5INB A;  1MF8 A;  3QFN A;  3ICF A;  4FBK A;  4MOY A;  1KBP A;  2HYO A;  4V0V A;  1M63 A;  2JOG A;  2WDC A;  4DHL A;  2DXN A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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