1T71A

Crystal structure of a novel phosphatase mycoplasma pneumoniaefrom
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
281
structure length
281
Chain Sequence
MMNSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLLGTSVPLPFKTTNPFKVLKELILKRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIFGTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSREHFEVSKCGAQLNGVFFEVDVNTKKVIKTEAIRIVEDDPRYLKQDYFNLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords phosphatase
publication title Crystal structure of a novel phosphatase from Mycoplasma pneumoniae
rcsb
source organism Mycoplasma pneumoniae m129
molecule tags Hydrolase
total genus 78
structure length 281
sequence length 281
ec nomenclature
pdb deposition date 2004-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1t71A00
2QFRA 1M63A 5EQVA 3QG5C 3ICFA 4FBKA 2XMOA 1T71A 5F3WA 4LTYA 5J28A 2HY1A 5INBA 1WARA 3EGGA 4I5NC 4H1YP 3DW8C 4Q7FA 1OIEA 3H63A 1II7A 4M0VA 4FBWA 2O8GA 4O4KA 4TUGA 1MF8A 1Z2WA 4KKZA 4F0ZA 4V0WA 3PSNA 4ZVZA 4HD0A 3K7WC 1KBPA 4H1SA 4XPNA 4O43A 4LU9A 1S3MA 3QFKA 4G9JA 2Q8UA 2WDCA 1UTEA 4H2GA 4I5LC 4V0XA 4O5GA 4DSYA 2BQ8X 3V4YA 2GJUA 1USHA 3QFMA 4KBPA 4ZX2A 3DSDA 3H68A 4DHLA 3TGHA 3GVEA 4O24A 3C9FA 1HP1A 5JPFA 2HYOA 2Z1AA 5JPEA 3THOB 1S3LA 4ORCA 3H60A 3IVEA 3T1IA 3E7AA 2USHA 1OI8A 5JJTA 2WDDA 3H66A 4ORAA 3ZU0A 1FJMA 3JYFA 1AUIA 2KKNA 3H62B 3THNA 3PSOA 1U32A 2WDFA 4H2BA 5HPEA 2NYLC 3FGAC 3ZTVA 4YKEA 1XZWA 2WDEA 3QFNA 2IE4C 3DSCA 3EGHA 4UT3A 2AHDA 4IYPC 4FCXA 2HYPA 3K7VC 1JK7A 1QHWA 5GTUA 4OR9A 4V0VA 4B2OA 2A22A 3AV0A 1Z2XA 4WWLA 3RL3A 1V73A 3IB7A 4H2FA 1XM7A 1UF3A 5B8IA 1S3NA 2O8AA 3AUZA 3IB8A 1HO5A 1NNWA 1IT6A 2NXFA 4J6OA 5DNYA 3N5UA 1S70A 4JA9A 4MOYA 2YVTA 2R17A 1OIDA 3H69A 4UT2A 3RL4A 2Z72A 5C1VA 1QFCA 3RL5A 2QJCA 4DT2A 2JOGA 5IOHA 4UT3B 3E7BA 4JA7A 4MOVA 4NZVA 1TCOA 3CK2A 3LL8A 4ORBA 2BDXA 2Z06A 2IE3C 3H61A 4UWQA 4FBQA 3H67A 2P6BA 3P71C 2IAEC 4MP0A 4LACC 3RQZA 1W24A 3IVDA 1S95A 2QFPA 3QFOA 1T70A 4TUIA 1S8EA 2BCDA 4IL1A 2ZBMA 1G5BA 1WAO1 3C5WC 3HVQA 2NYMC 3H64A 2DFJA 2NPPC 1SU1A 1HPUA 4H2IA 3KBPA 2CV9A
chains in the Genus database with same CATH superfamily
2QFRA 1M63A 5EQVA 3QG5C 3ICFA 4FBKA 2XMOA 1T71A 5F3WA 4LTYA 5J28A 2HY1A 5INBA 1WARA 3EGGA 4I5NC 4H1YP 3DW8C 4Q7FA 1OIEA 3H63A 1II7A 4M0VA 4FBWA 2O8GA 4O4KA 4TUGA 1MF8A 1Z2WA 4KKZA 4F0ZA 4V0WA 3PSNA 4ZVZA 4HD0A 3K7WC 1KBPA 4H1SA 2YEQA 4O43A 4LU9A 4XPNA 1S3MA 3QFKA 4G9JA 2Q8UA 2WDCA 1UTEA 4H2GA 4I5LC 4V0XA 4O5GA 2DXNA 4DSYA 2BQ8X 3V4YA 2GJUA 1USHA 3QFMA 4KBPA 4ZX2A 3DSDA 2ZO9B 3H68A 4DHLA 3TGHA 3GVEA 4O24A 3C9FA 1HP1A 5JPFA 2HYOA 2Z1AA 5JPEA 3FLOA 3THOB 1S3LA 4ORCA 3H60A 3IVEA 3T1IA 3E7AA 2USHA 1OI8A 5JJTA 2WDDA 3H66A 4ORAA 3ZU0A 1FJMA 3JYFA 1AUIA 2KKNA 3H62B 3THNA 3PSOA 1U32A 2WDFA 4H2BA 5HPEA 2NYLC 3FGAC 3ZTVA 4YKEA 1XZWA 2WDEA 3QFNA 2IE4C 3DSCA 3EGHA 4UT3A 2AHDA 4IYPC 4FCXA 2HYPA 3K7VC 1JK7A 1QHWA 5GTUA 4OR9A 4V0VA 4B2OA 2A22A 3AV0A 1Z2XA 4WWLA 3RL3A 1V73A 3IB7A 4H2FA 1XM7A 1UF3A 2ZOAA 5B8IA 1S3NA 2O8AA 3AUZA 3IB8A 1HO5A 1NNWA 1IT6A 2DXLA 2NXFA 4J6OA 5DNYA 3N5UA 1S70A 4JA9A 4MOYA 2YVTA 2R17A 1OIDA 3H69A 4UT2A 3RL4A 2Z72A 5C1VA 1QFCA 3RL5A 2QJCA 4DT2A 2JOGA 5IOHA 4UT3B 3E7BA 4JA7A 4MOVA 4NZVA 1TCOA 3CK2A 3LL8A 4ORBA 2BDXA 3E0JA 2Z06A 2IE3C 3H61A 3D03A 4FBQA 3H67A 4UWQA 2P6BA 3P71C 2IAEC 4MP0A 4LACC 3RQZA 1W24A 3IVDA 1S95A 2QFPA 3QFOA 1T70A 4TUIA 1S8EA 2BCDA 4IL1A 2ZBMA 1G5BA 1WAO1 3C5WC 3HVQA 2NYMC 3H64A 2DFJA 2NPPC 1SU1A 1HPUA 4H2IA 3KBPA 2CV9A
chains in the Genus database with same CATH topology
2QFRA 1M63A 5EQVA 3QG5C 3ICFA 4FBKA 2XMOA 1T71A 5F3WA 4LTYA 5J28A 2HY1A 5INBA 1WARA 3EGGA 4I5NC 4H1YP 3DW8C 4Q7FA 1OIEA 3H63A 1II7A 4M0VA 4FBWA 2O8GA 4O4KA 4TUGA 1MF8A 1Z2WA 4KKZA 4F0ZA 4V0WA 3PSNA 4ZVZA 4HD0A 3K7WC 1KBPA 4H1SA 2YEQA 4O43A 4LU9A 4XPNA 1S3MA 3QFKA 4G9JA 2Q8UA 2WDCA 1UTEA 4H2GA 4I5LC 4V0XA 4O5GA 2DXNA 4DSYA 2BQ8X 3V4YA 2GJUA 1USHA 3QFMA 4KBPA 4ZX2A 3DSDA 2ZO9B 3H68A 4DHLA 3TGHA 3GVEA 4O24A 3C9FA 1HP1A 5JPFA 2HYOA 2Z1AA 5JPEA 3FLOA 3THOB 1S3LA 4ORCA 3H60A 3IVEA 3T1IA 3E7AA 2USHA 1OI8A 5JJTA 2WDDA 3H66A 4ORAA 3ZU0A 1FJMA 3JYFA 1AUIA 2KKNA 3H62B 3THNA 3PSOA 1U32A 2WDFA 4H2BA 5HPEA 2NYLC 3FGAC 3ZTVA 4YKEA 1XZWA 2WDEA 3QFNA 2IE4C 3DSCA 3EGHA 4UT3A 2AHDA 4IYPC 4FCXA 2HYPA 3K7VC 1JK7A 1QHWA 5GTUA 4OR9A 4V0VA 4B2OA 2A22A 3AV0A 1Z2XA 4WWLA 3RL3A 1V73A 3IB7A 4H2FA 1XM7A 1UF3A 2ZOAA 5B8IA 1S3NA 2O8AA 3AUZA 3IB8A 1HO5A 1NNWA 1IT6A 2DXLA 2NXFA 4J6OA 5DNYA 3N5UA 1S70A 4JA9A 4MOYA 2YVTA 2R17A 1OIDA 3H69A 4UT2A 3RL4A 2Z72A 5C1VA 1QFCA 3RL5A 2QJCA 4DT2A 2JOGA 5IOHA 4UT3B 3E7BA 4JA7A 4MOVA 4NZVA 1TCOA 3CK2A 3LL8A 4ORBA 2BDXA 3E0JA 2Z06A 2IE3C 3H61A 3D03A 4FBQA 3H67A 4UWQA 2P6BA 3P71C 2IAEC 4MP0A 4LACC 3RQZA 1W24A 3IVDA 1S95A 2QFPA 3QFOA 1T70A 4TUIA 1S8EA 2BCDA 4IL1A 2ZBMA 1G5BA 1WAO1 3C5WC 3HVQA 2NYMC 3H64A 2DFJA 2NPPC 1SU1A 1HPUA 4H2IA 3KBPA 2CV9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFR A;  1M63 A;  5EQV A;  3QG5 C;  3ICF A;  4FBK A;  2XMO A;  1T71 A;  5F3W A;  4LTY A;  5J28 A;  2HY1 A;  5INB A;  1WAR A;  3EGG A;  4I5N C;  4H1Y P;  3DW8 C;  4Q7F A;  1OIE A;  3H63 A;  1II7 A;  4M0V A;  4FBW A;  2O8G A;  4O4K A;  4TUG A;  1MF8 A;  1Z2W A;  4KKZ A;  4F0Z A;  4V0W A;  3PSN A;  4ZVZ A;  4HD0 A;  3K7W C;  1KBP A;  4H1S A;  4XPN A;  4O43 A;  4LU9 A;  1S3M A;  3QFK A;  4G9J A;  2Q8U A;  2WDC A;  1UTE A;  4H2G A;  4I5L C;  4V0X A;  4O5G A;  4DSY A;  2BQ8 X;  3V4Y A;  2GJU A;  1USH A;  3QFM A;  4KBP A;  4ZX2 A;  3DSD A;  3H68 A;  4DHL A;  3TGH A;  3GVE A;  4O24 A;  3C9F A;  1HP1 A;  5JPF A;  2HYO A;  2Z1A A;  5JPE A;  3THO B;  1S3L A;  4ORC A;  3H60 A;  3IVE A;  3T1I A;  3E7A A;  2USH A;  1OI8 A;  5JJT A;  2WDD A;  3H66 A;  4ORA A;  3ZU0 A;  1FJM A;  3JYF A;  1AUI A;  2KKN A;  3H62 B;  3THN A;  3PSO A;  1U32 A;  2WDF A;  4H2B A;  5HPE A;  2NYL C;  3FGA C;  3ZTV A;  4YKE A;  1XZW A;  2WDE A;  3QFN A;  2IE4 C;  3DSC A;  3EGH A;  4UT3 A;  2AHD A;  4IYP C;  4FCX A;  2HYP A;  3K7V C;  1JK7 A;  1QHW A;  5GTU A;  4OR9 A;  4V0V A;  4B2O A;  2A22 A;  3AV0 A;  1Z2X A;  4WWL A;  3RL3 A;  1V73 A;  3IB7 A;  4H2F A;  1XM7 A;  1UF3 A;  5B8I A;  1S3N A;  2O8A A;  3AUZ A;  3IB8 A;  1HO5 A;  1NNW A;  1IT6 A;  2NXF A;  4J6O A;  5DNY A;  3N5U A;  1S70 A;  4JA9 A;  4MOY A;  2YVT A;  2R17 A;  1OID A;  3H69 A;  4UT2 A;  3RL4 A;  2Z72 A;  5C1V A;  1QFC A;  3RL5 A;  2QJC A;  4DT2 A;  2JOG A;  5IOH A;  4UT3 B;  3E7B A;  4JA7 A;  4MOV A;  4NZV A;  1TCO A;  3CK2 A;  3LL8 A;  4ORB A;  2BDX A;  2Z06 A;  2IE3 C;  3H61 A;  4UWQ A;  4FBQ A;  3H67 A;  2P6B A;  3P71 C;  2IAE C;  4MP0 A;  4LAC C;  3RQZ A;  1W24 A;  3IVD A;  1S95 A;  2QFP A;  3QFO A;  1T70 A;  4TUI A;  1S8E A;  2BCD A;  4IL1 A;  2ZBM A;  1G5B A;  1WAO 1;  3C5W C;  3HVQ A;  2NYM C;  3H64 A;  2DFJ A;  2NPP C;  1SU1 A;  1HPU A;  4H2I A;  3KBP A;  2CV9 A; 
#chains in the Genus database with same CATH topology
 2QFR A;  1M63 A;  5EQV A;  3QG5 C;  3ICF A;  4FBK A;  2XMO A;  1T71 A;  5F3W A;  4LTY A;  5J28 A;  2HY1 A;  5INB A;  1WAR A;  3EGG A;  4I5N C;  4H1Y P;  3DW8 C;  4Q7F A;  1OIE A;  3H63 A;  1II7 A;  4M0V A;  4FBW A;  2O8G A;  4O4K A;  4TUG A;  1MF8 A;  1Z2W A;  4KKZ A;  4F0Z A;  4V0W A;  3PSN A;  4ZVZ A;  4HD0 A;  3K7W C;  1KBP A;  4H1S A;  2YEQ A;  4O43 A;  4LU9 A;  4XPN A;  1S3M A;  3QFK A;  4G9J A;  2Q8U A;  2WDC A;  1UTE A;  4H2G A;  4I5L C;  4V0X A;  4O5G A;  2DXN A;  4DSY A;  2BQ8 X;  3V4Y A;  2GJU A;  1USH A;  3QFM A;  4KBP A;  4ZX2 A;  3DSD A;  2ZO9 B;  3H68 A;  4DHL A;  3TGH A;  3GVE A;  4O24 A;  3C9F A;  1HP1 A;  5JPF A;  2HYO A;  2Z1A A;  5JPE A;  3FLO A;  3THO B;  1S3L A;  4ORC A;  3H60 A;  3IVE A;  3T1I A;  3E7A A;  2USH A;  1OI8 A;  5JJT A;  2WDD A;  3H66 A;  4ORA A;  3ZU0 A;  1FJM A;  3JYF A;  1AUI A;  2KKN A;  3H62 B;  3THN A;  3PSO A;  1U32 A;  2WDF A;  4H2B A;  5HPE A;  2NYL C;  3FGA C;  3ZTV A;  4YKE A;  1XZW A;  2WDE A;  3QFN A;  2IE4 C;  3DSC A;  3EGH A;  4UT3 A;  2AHD A;  4IYP C;  4FCX A;  2HYP A;  3K7V C;  1JK7 A;  1QHW A;  5GTU A;  4OR9 A;  4V0V A;  4B2O A;  2A22 A;  3AV0 A;  1Z2X A;  4WWL A;  3RL3 A;  1V73 A;  3IB7 A;  4H2F A;  1XM7 A;  1UF3 A;  2ZOA A;  5B8I A;  1S3N A;  2O8A A;  3AUZ A;  3IB8 A;  1HO5 A;  1NNW A;  1IT6 A;  2DXL A;  2NXF A;  4J6O A;  5DNY A;  3N5U A;  1S70 A;  4JA9 A;  4MOY A;  2YVT A;  2R17 A;  1OID A;  3H69 A;  4UT2 A;  3RL4 A;  2Z72 A;  5C1V A;  1QFC A;  3RL5 A;  2QJC A;  4DT2 A;  2JOG A;  5IOH A;  4UT3 B;  3E7B A;  4JA7 A;  4MOV A;  4NZV A;  1TCO A;  3CK2 A;  3LL8 A;  4ORB A;  2BDX A;  3E0J A;  2Z06 A;  2IE3 C;  3H61 A;  3D03 A;  4FBQ A;  3H67 A;  4UWQ A;  2P6B A;  3P71 C;  2IAE C;  4MP0 A;  4LAC C;  3RQZ A;  1W24 A;  3IVD A;  1S95 A;  2QFP A;  3QFO A;  1T70 A;  4TUI A;  1S8E A;  2BCD A;  4IL1 A;  2ZBM A;  1G5B A;  1WAO 1;  3C5W C;  3HVQ A;  2NYM C;  3H64 A;  2DFJ A;  2NPP C;  1SU1 A;  1HPU A;  4H2I A;  3KBP A;  2CV9 A; 
#chains in the Genus database with same CATH homology
 2QFR A;  1M63 A;  5EQV A;  3QG5 C;  3ICF A;  4FBK A;  2XMO A;  1T71 A;  5F3W A;  4LTY A;  5J28 A;  2HY1 A;  5INB A;  1WAR A;  3EGG A;  4I5N C;  4H1Y P;  3DW8 C;  4Q7F A;  1OIE A;  3H63 A;  1II7 A;  4M0V A;  4FBW A;  2O8G A;  4O4K A;  4TUG A;  1MF8 A;  1Z2W A;  4KKZ A;  4F0Z A;  4V0W A;  3PSN A;  4ZVZ A;  4HD0 A;  3K7W C;  1KBP A;  4H1S A;  2YEQ A;  4O43 A;  4LU9 A;  4XPN A;  1S3M A;  3QFK A;  4G9J A;  2Q8U A;  2WDC A;  1UTE A;  4H2G A;  4I5L C;  4V0X A;  4O5G A;  2DXN A;  4DSY A;  2BQ8 X;  3V4Y A;  2GJU A;  1USH A;  3QFM A;  4KBP A;  4ZX2 A;  3DSD A;  2ZO9 B;  3H68 A;  4DHL A;  3TGH A;  3GVE A;  4O24 A;  3C9F A;  1HP1 A;  5JPF A;  2HYO A;  2Z1A A;  5JPE A;  3FLO A;  3THO B;  1S3L A;  4ORC A;  3H60 A;  3IVE A;  3T1I A;  3E7A A;  2USH A;  1OI8 A;  5JJT A;  2WDD A;  3H66 A;  4ORA A;  3ZU0 A;  1FJM A;  3JYF A;  1AUI A;  2KKN A;  3H62 B;  3THN A;  3PSO A;  1U32 A;  2WDF A;  4H2B A;  5HPE A;  2NYL C;  3FGA C;  3ZTV A;  4YKE A;  1XZW A;  2WDE A;  3QFN A;  2IE4 C;  3DSC A;  3EGH A;  4UT3 A;  2AHD A;  4IYP C;  4FCX A;  2HYP A;  3K7V C;  1JK7 A;  1QHW A;  5GTU A;  4OR9 A;  4V0V A;  4B2O A;  2A22 A;  3AV0 A;  1Z2X A;  4WWL A;  3RL3 A;  1V73 A;  3IB7 A;  4H2F A;  1XM7 A;  1UF3 A;  2ZOA A;  5B8I A;  1S3N A;  2O8A A;  3AUZ A;  3IB8 A;  1HO5 A;  1NNW A;  1IT6 A;  2DXL A;  2NXF A;  4J6O A;  5DNY A;  3N5U A;  1S70 A;  4JA9 A;  4MOY A;  2YVT A;  2R17 A;  1OID A;  3H69 A;  4UT2 A;  3RL4 A;  2Z72 A;  5C1V A;  1QFC A;  3RL5 A;  2QJC A;  4DT2 A;  2JOG A;  5IOH A;  4UT3 B;  3E7B A;  4JA7 A;  4MOV A;  4NZV A;  1TCO A;  3CK2 A;  3LL8 A;  4ORB A;  2BDX A;  3E0J A;  2Z06 A;  2IE3 C;  3H61 A;  3D03 A;  4FBQ A;  3H67 A;  4UWQ A;  2P6B A;  3P71 C;  2IAE C;  4MP0 A;  4LAC C;  3RQZ A;  1W24 A;  3IVD A;  1S95 A;  2QFP A;  3QFO A;  1T70 A;  4TUI A;  1S8E A;  2BCD A;  4IL1 A;  2ZBM A;  1G5B A;  1WAO 1;  3C5W C;  3HVQ A;  2NYM C;  3H64 A;  2DFJ A;  2NPP C;  1SU1 A;  1HPU A;  4H2I A;  3KBP A;  2CV9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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