1T71A

Crystal structure of a novel phosphatase mycoplasma pneumoniaefrom
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
281
structure length
281
Chain Sequence
MMNSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLLGTSVPLPFKTTNPFKVLKELILKRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIFGTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSREHFEVSKCGAQLNGVFFEVDVNTKKVIKTEAIRIVEDDPRYLKQDYFNLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a novel phosphatase from Mycoplasma pneumoniae
rcsb
source organism Mycoplasma pneumoniae m129
molecule tags Hydrolase
molecule keywords phosphatase
total genus 78
structure length 281
sequence length 281
ec nomenclature
pdb deposition date 2004-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1t71A00
4V0XA 4ORBA 4MOYA 4Q7FA 1S70A 4UWQA 3EGGA 2KKNA 1NNWA 1USHA 1W24A 3H63A 4H2GA 2YVTA 2BDXA 2BQ8X 4I5LC 4IYPC 2O8AA 3K7VC 1QHWA 2BCDA 4UT3A 2WDCA 4YKEA 3DSCA 1SU1A 2Q8UA 3EGHA 4J6OA 4DSYA 4O43A 3QFNA 3T1IA 3RL5A 1IT6A 3PSNA 2GJUA 1XM7A 2Z72A 1Z2XA 1S95A 2QFPA 4JA9A 3H61A 1HPUA 3K7WC 4DT2A 3JYFA 3H67A 4O24A 4H2BA 4KKZA 4FBQA 1OIEA 4M0VA 1G5BA 2HYOA 5B8IA 5C1VA 4DHLA 4XPNA 3H62B 3RQZA 3C5WC 4H1SA 4LTYA 4H2IA 3IB8A 3IB7A 3DW8C 3IVDA 2AHDA 3AUZA 1UF3A 2QFRA 1WARA 3H60A 4KBPA 3FGAC 4JA7A 2Z06A 4H2FA 4LACC 1XZWA 1S3MA 4LU9A 3KBPA 2NYLC 3N5UA 1TCOA 3THOB 4V0WA 3DSDA 5EQVA 2IAEC 4OR9A 2IE4C 2A22A 5JPEA 1U32A 3AV0A 4F0ZA 3HVQA 4WWLA 2R17A 3PSOA 1Z2WA 5JJTA 1JK7A 5J28A 4TUIA 4V0VA 4B2OA 2Z1AA 4IL1A 3LL8A 2NXFA 1MF8A 3GVEA 4I5NC 4ZX2A 2WDEA 5GTUA 1S8EA 2DFJA 4H1YP 3IVEA 3ZU0A 1WAO1 5JPFA 1FJMA 3E7BA 4O4KA 2O8GA 4ORAA 4G9JA 2ZBMA 4MOVA 5HPEA 2HYPA 3QG5C 1OI8A 4ZVZA 1OIDA 2NPPC 3P71C 3QFKA 5F3WA 1S3LA 2WDFA 4FBWA 4MP0A 4NZVA 3RL4A 3V4YA 3QFOA 2CV9A 1HP1A 4FCXA 3ZTVA 4TUGA 2XMOA 2IE3C 1M63A 2NYMC 4UT3B 3RL3A 4FBKA 3QFMA 3CK2A 4HD0A 3H64A 1UTEA 1V73A 2HY1A 3ICFA 3H66A 1HO5A 2P6BA 3TGHA 1AUIA 2JOGA 5DNYA 4UT2A 5INBA 5IOHA 1T70A 1S3NA 1QFCA 2USHA 3H69A 1T71A 1KBPA 3THNA 2WDDA 4ORCA 2QJCA 1II7A 3E7AA 4O5GA 3H68A 3C9FA
chains in the Genus database with same CATH superfamily
4V0XA 4ORBA 4MOYA 4Q7FA 1S70A 4UWQA 3EGGA 2KKNA 1NNWA 1USHA 1W24A 3H63A 4H2GA 2YVTA 2BDXA 2BQ8X 4I5LC 4IYPC 2O8AA 3K7VC 1QHWA 2BCDA 4UT3A 2WDCA 4YKEA 3DSCA 1SU1A 2Q8UA 3EGHA 4J6OA 4DSYA 4O43A 3QFNA 3FLOA 3T1IA 3RL5A 1IT6A 3PSNA 2GJUA 1XM7A 2Z72A 1Z2XA 1S95A 2QFPA 4JA9A 2YEQA 3H61A 2DXLA 1HPUA 3K7WC 4DT2A 3JYFA 3H67A 4O24A 4H2BA 4KKZA 4FBQA 1OIEA 4M0VA 1G5BA 2HYOA 5B8IA 5C1VA 4DHLA 4XPNA 3H62B 3RQZA 3C5WC 4H1SA 4LTYA 4H2IA 3IB8A 3IB7A 3DW8C 3IVDA 2AHDA 3AUZA 1UF3A 2QFRA 1WARA 3H60A 4KBPA 3D03A 3FGAC 2Z06A 4H2FA 4JA7A 4LACC 1XZWA 1S3MA 4LU9A 3KBPA 2NYLC 3N5UA 1TCOA 3THOB 4V0WA 3DSDA 5EQVA 2IAEC 4OR9A 2IE4C 2A22A 5JPEA 1U32A 3AV0A 4F0ZA 3HVQA 4WWLA 2R17A 3PSOA 1Z2WA 5JJTA 1JK7A 5J28A 4TUIA 4V0VA 4B2OA 2Z1AA 4IL1A 3LL8A 2NXFA 1MF8A 3GVEA 4I5NC 4ZX2A 2DXNA 2WDEA 5GTUA 1S8EA 2ZOAA 2DFJA 4H1YP 3IVEA 3ZU0A 1WAO1 5JPFA 1FJMA 3E7BA 4O4KA 2O8GA 4ORAA 4G9JA 2ZBMA 4MOVA 5HPEA 2HYPA 3E0JA 3QG5C 1OI8A 4ZVZA 1OIDA 2NPPC 3P71C 3QFKA 5F3WA 1S3LA 2WDFA 4FBWA 4MP0A 4NZVA 3RL4A 3V4YA 3QFOA 2CV9A 1HP1A 4FCXA 3ZTVA 4TUGA 2XMOA 2IE3C 1M63A 2NYMC 4UT3B 3RL3A 4FBKA 3QFMA 3CK2A 4HD0A 3H64A 1UTEA 1V73A 2HY1A 3ICFA 3H66A 1HO5A 2P6BA 3TGHA 1AUIA 2JOGA 5DNYA 4UT2A 5INBA 5IOHA 1T70A 1S3NA 1QFCA 2USHA 3H69A 1T71A 1KBPA 3THNA 2ZO9B 2WDDA 4ORCA 2QJCA 1II7A 3E7AA 4O5GA 3H68A 3C9FA
chains in the Genus database with same CATH topology
4V0XA 4ORBA 4MOYA 4Q7FA 1S70A 4UWQA 3EGGA 2KKNA 1NNWA 1USHA 1W24A 3H63A 4H2GA 2YVTA 2BDXA 2BQ8X 4I5LC 4IYPC 2O8AA 3K7VC 1QHWA 2BCDA 4UT3A 2WDCA 4YKEA 3DSCA 1SU1A 2Q8UA 3EGHA 4J6OA 4DSYA 4O43A 3QFNA 3FLOA 3T1IA 3RL5A 1IT6A 3PSNA 2GJUA 1XM7A 2Z72A 1Z2XA 1S95A 2QFPA 4JA9A 2YEQA 3H61A 2DXLA 1HPUA 3K7WC 4DT2A 3JYFA 3H67A 4O24A 4H2BA 4KKZA 4FBQA 1OIEA 4M0VA 1G5BA 2HYOA 5B8IA 5C1VA 4DHLA 4XPNA 3H62B 3RQZA 3C5WC 4H1SA 4LTYA 4H2IA 3IB8A 3IB7A 3DW8C 3IVDA 2AHDA 3AUZA 1UF3A 2QFRA 1WARA 3H60A 4KBPA 3D03A 3FGAC 2Z06A 4H2FA 4JA7A 4LACC 1XZWA 1S3MA 4LU9A 3KBPA 2NYLC 3N5UA 1TCOA 3THOB 4V0WA 3DSDA 5EQVA 2IAEC 4OR9A 2IE4C 2A22A 5JPEA 1U32A 3AV0A 4F0ZA 3HVQA 4WWLA 2R17A 3PSOA 1Z2WA 5JJTA 1JK7A 5J28A 4TUIA 4V0VA 4B2OA 2Z1AA 4IL1A 3LL8A 2NXFA 1MF8A 3GVEA 4I5NC 4ZX2A 2DXNA 2WDEA 5GTUA 1S8EA 2ZOAA 2DFJA 4H1YP 3IVEA 3ZU0A 1WAO1 5JPFA 1FJMA 3E7BA 4O4KA 2O8GA 4ORAA 4G9JA 2ZBMA 4MOVA 5HPEA 2HYPA 3E0JA 3QG5C 1OI8A 4ZVZA 1OIDA 2NPPC 3P71C 3QFKA 5F3WA 1S3LA 2WDFA 4FBWA 4MP0A 4NZVA 3RL4A 3V4YA 3QFOA 2CV9A 1HP1A 4FCXA 3ZTVA 4TUGA 2XMOA 2IE3C 1M63A 2NYMC 4UT3B 3RL3A 4FBKA 3QFMA 3CK2A 4HD0A 3H64A 1UTEA 1V73A 2HY1A 3ICFA 3H66A 1HO5A 2P6BA 3TGHA 1AUIA 2JOGA 5DNYA 4UT2A 5INBA 5IOHA 1T70A 1S3NA 1QFCA 2USHA 3H69A 1T71A 1KBPA 3THNA 2ZO9B 2WDDA 4ORCA 2QJCA 1II7A 3E7AA 4O5GA 3H68A 3C9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4V0X A;  4ORB A;  4MOY A;  4Q7F A;  1S70 A;  4UWQ A;  3EGG A;  2KKN A;  1NNW A;  1USH A;  1W24 A;  3H63 A;  4H2G A;  2YVT A;  2BDX A;  2BQ8 X;  4I5L C;  4IYP C;  2O8A A;  3K7V C;  1QHW A;  2BCD A;  4UT3 A;  2WDC A;  4YKE A;  3DSC A;  1SU1 A;  2Q8U A;  3EGH A;  4J6O A;  4DSY A;  4O43 A;  3QFN A;  3T1I A;  3RL5 A;  1IT6 A;  3PSN A;  2GJU A;  1XM7 A;  2Z72 A;  1Z2X A;  1S95 A;  2QFP A;  4JA9 A;  3H61 A;  1HPU A;  3K7W C;  4DT2 A;  3JYF A;  3H67 A;  4O24 A;  4H2B A;  4KKZ A;  4FBQ A;  1OIE A;  4M0V A;  1G5B A;  2HYO A;  5B8I A;  5C1V A;  4DHL A;  4XPN A;  3H62 B;  3RQZ A;  3C5W C;  4H1S A;  4LTY A;  4H2I A;  3IB8 A;  3IB7 A;  3DW8 C;  3IVD A;  2AHD A;  3AUZ A;  1UF3 A;  2QFR A;  1WAR A;  3H60 A;  4KBP A;  3FGA C;  4JA7 A;  2Z06 A;  4H2F A;  4LAC C;  1XZW A;  1S3M A;  4LU9 A;  3KBP A;  2NYL C;  3N5U A;  1TCO A;  3THO B;  4V0W A;  3DSD A;  5EQV A;  2IAE C;  4OR9 A;  2IE4 C;  2A22 A;  5JPE A;  1U32 A;  3AV0 A;  4F0Z A;  3HVQ A;  4WWL A;  2R17 A;  3PSO A;  1Z2W A;  5JJT A;  1JK7 A;  5J28 A;  4TUI A;  4V0V A;  4B2O A;  2Z1A A;  4IL1 A;  3LL8 A;  2NXF A;  1MF8 A;  3GVE A;  4I5N C;  4ZX2 A;  2WDE A;  5GTU A;  1S8E A;  2DFJ A;  4H1Y P;  3IVE A;  3ZU0 A;  1WAO 1;  5JPF A;  1FJM A;  3E7B A;  4O4K A;  2O8G A;  4ORA A;  4G9J A;  2ZBM A;  4MOV A;  5HPE A;  2HYP A;  3QG5 C;  1OI8 A;  4ZVZ A;  1OID A;  2NPP C;  3P71 C;  3QFK A;  5F3W A;  1S3L A;  2WDF A;  4FBW A;  4MP0 A;  4NZV A;  3RL4 A;  3V4Y A;  3QFO A;  2CV9 A;  1HP1 A;  4FCX A;  3ZTV A;  4TUG A;  2XMO A;  2IE3 C;  1M63 A;  2NYM C;  4UT3 B;  3RL3 A;  4FBK A;  3QFM A;  3CK2 A;  4HD0 A;  3H64 A;  1UTE A;  1V73 A;  2HY1 A;  3ICF A;  3H66 A;  1HO5 A;  2P6B A;  3TGH A;  1AUI A;  2JOG A;  5DNY A;  4UT2 A;  5INB A;  5IOH A;  1T70 A;  1S3N A;  1QFC A;  2USH A;  3H69 A;  1T71 A;  1KBP A;  3THN A;  2WDD A;  4ORC A;  2QJC A;  1II7 A;  3E7A A;  4O5G A;  3H68 A;  3C9F A; 
#chains in the Genus database with same CATH topology
 4V0X A;  4ORB A;  4MOY A;  4Q7F A;  1S70 A;  4UWQ A;  3EGG A;  2KKN A;  1NNW A;  1USH A;  1W24 A;  3H63 A;  4H2G A;  2YVT A;  2BDX A;  2BQ8 X;  4I5L C;  4IYP C;  2O8A A;  3K7V C;  1QHW A;  2BCD A;  4UT3 A;  2WDC A;  4YKE A;  3DSC A;  1SU1 A;  2Q8U A;  3EGH A;  4J6O A;  4DSY A;  4O43 A;  3QFN A;  3FLO A;  3T1I A;  3RL5 A;  1IT6 A;  3PSN A;  2GJU A;  1XM7 A;  2Z72 A;  1Z2X A;  1S95 A;  2QFP A;  4JA9 A;  2YEQ A;  3H61 A;  2DXL A;  1HPU A;  3K7W C;  4DT2 A;  3JYF A;  3H67 A;  4O24 A;  4H2B A;  4KKZ A;  4FBQ A;  1OIE A;  4M0V A;  1G5B A;  2HYO A;  5B8I A;  5C1V A;  4DHL A;  4XPN A;  3H62 B;  3RQZ A;  3C5W C;  4H1S A;  4LTY A;  4H2I A;  3IB8 A;  3IB7 A;  3DW8 C;  3IVD A;  2AHD A;  3AUZ A;  1UF3 A;  2QFR A;  1WAR A;  3H60 A;  4KBP A;  3D03 A;  3FGA C;  2Z06 A;  4H2F A;  4JA7 A;  4LAC C;  1XZW A;  1S3M A;  4LU9 A;  3KBP A;  2NYL C;  3N5U A;  1TCO A;  3THO B;  4V0W A;  3DSD A;  5EQV A;  2IAE C;  4OR9 A;  2IE4 C;  2A22 A;  5JPE A;  1U32 A;  3AV0 A;  4F0Z A;  3HVQ A;  4WWL A;  2R17 A;  3PSO A;  1Z2W A;  5JJT A;  1JK7 A;  5J28 A;  4TUI A;  4V0V A;  4B2O A;  2Z1A A;  4IL1 A;  3LL8 A;  2NXF A;  1MF8 A;  3GVE A;  4I5N C;  4ZX2 A;  2DXN A;  2WDE A;  5GTU A;  1S8E A;  2ZOA A;  2DFJ A;  4H1Y P;  3IVE A;  3ZU0 A;  1WAO 1;  5JPF A;  1FJM A;  3E7B A;  4O4K A;  2O8G A;  4ORA A;  4G9J A;  2ZBM A;  4MOV A;  5HPE A;  2HYP A;  3E0J A;  3QG5 C;  1OI8 A;  4ZVZ A;  1OID A;  2NPP C;  3P71 C;  3QFK A;  5F3W A;  1S3L A;  2WDF A;  4FBW A;  4MP0 A;  4NZV A;  3RL4 A;  3V4Y A;  3QFO A;  2CV9 A;  1HP1 A;  4FCX A;  3ZTV A;  4TUG A;  2XMO A;  2IE3 C;  1M63 A;  2NYM C;  4UT3 B;  3RL3 A;  4FBK A;  3QFM A;  3CK2 A;  4HD0 A;  3H64 A;  1UTE A;  1V73 A;  2HY1 A;  3ICF A;  3H66 A;  1HO5 A;  2P6B A;  3TGH A;  1AUI A;  2JOG A;  5DNY A;  4UT2 A;  5INB A;  5IOH A;  1T70 A;  1S3N A;  1QFC A;  2USH A;  3H69 A;  1T71 A;  1KBP A;  3THN A;  2ZO9 B;  2WDD A;  4ORC A;  2QJC A;  1II7 A;  3E7A A;  4O5G A;  3H68 A;  3C9F A; 
#chains in the Genus database with same CATH homology
 4V0X A;  4ORB A;  4MOY A;  4Q7F A;  1S70 A;  4UWQ A;  3EGG A;  2KKN A;  1NNW A;  1USH A;  1W24 A;  3H63 A;  4H2G A;  2YVT A;  2BDX A;  2BQ8 X;  4I5L C;  4IYP C;  2O8A A;  3K7V C;  1QHW A;  2BCD A;  4UT3 A;  2WDC A;  4YKE A;  3DSC A;  1SU1 A;  2Q8U A;  3EGH A;  4J6O A;  4DSY A;  4O43 A;  3QFN A;  3FLO A;  3T1I A;  3RL5 A;  1IT6 A;  3PSN A;  2GJU A;  1XM7 A;  2Z72 A;  1Z2X A;  1S95 A;  2QFP A;  4JA9 A;  2YEQ A;  3H61 A;  2DXL A;  1HPU A;  3K7W C;  4DT2 A;  3JYF A;  3H67 A;  4O24 A;  4H2B A;  4KKZ A;  4FBQ A;  1OIE A;  4M0V A;  1G5B A;  2HYO A;  5B8I A;  5C1V A;  4DHL A;  4XPN A;  3H62 B;  3RQZ A;  3C5W C;  4H1S A;  4LTY A;  4H2I A;  3IB8 A;  3IB7 A;  3DW8 C;  3IVD A;  2AHD A;  3AUZ A;  1UF3 A;  2QFR A;  1WAR A;  3H60 A;  4KBP A;  3D03 A;  3FGA C;  2Z06 A;  4H2F A;  4JA7 A;  4LAC C;  1XZW A;  1S3M A;  4LU9 A;  3KBP A;  2NYL C;  3N5U A;  1TCO A;  3THO B;  4V0W A;  3DSD A;  5EQV A;  2IAE C;  4OR9 A;  2IE4 C;  2A22 A;  5JPE A;  1U32 A;  3AV0 A;  4F0Z A;  3HVQ A;  4WWL A;  2R17 A;  3PSO A;  1Z2W A;  5JJT A;  1JK7 A;  5J28 A;  4TUI A;  4V0V A;  4B2O A;  2Z1A A;  4IL1 A;  3LL8 A;  2NXF A;  1MF8 A;  3GVE A;  4I5N C;  4ZX2 A;  2DXN A;  2WDE A;  5GTU A;  1S8E A;  2ZOA A;  2DFJ A;  4H1Y P;  3IVE A;  3ZU0 A;  1WAO 1;  5JPF A;  1FJM A;  3E7B A;  4O4K A;  2O8G A;  4ORA A;  4G9J A;  2ZBM A;  4MOV A;  5HPE A;  2HYP A;  3E0J A;  3QG5 C;  1OI8 A;  4ZVZ A;  1OID A;  2NPP C;  3P71 C;  3QFK A;  5F3W A;  1S3L A;  2WDF A;  4FBW A;  4MP0 A;  4NZV A;  3RL4 A;  3V4Y A;  3QFO A;  2CV9 A;  1HP1 A;  4FCX A;  3ZTV A;  4TUG A;  2XMO A;  2IE3 C;  1M63 A;  2NYM C;  4UT3 B;  3RL3 A;  4FBK A;  3QFM A;  3CK2 A;  4HD0 A;  3H64 A;  1UTE A;  1V73 A;  2HY1 A;  3ICF A;  3H66 A;  1HO5 A;  2P6B A;  3TGH A;  1AUI A;  2JOG A;  5DNY A;  4UT2 A;  5INB A;  5IOH A;  1T70 A;  1S3N A;  1QFC A;  2USH A;  3H69 A;  1T71 A;  1KBP A;  3THN A;  2ZO9 B;  2WDD A;  4ORC A;  2QJC A;  1II7 A;  3E7A A;  4O5G A;  3H68 A;  3C9F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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